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Properties
| Property Name | Value |
|---|
| Product | Synaptobrevin |
| Orig transcript id | gnl|cribi|Naga_100024g26.4323.mrna |
| Orig protein id | gnl|cribi|Naga_100024g26.4323 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002457.1 | supercontig | CM002457.1:1051609..1053519 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna1610 ID=rna1610|Name=rna1610|organism=Nannochloropsis gaditana|type=mRNA|length=1587bp
TTACGTTATGCCCACGCTTATTCCAATGAGACAGATGATGCCTTTGTCTA
CCGATGTGTCCCCGCTTAATGTTGTTTGTGTGGGCTCTGGCATTGCATTT
CTTTATGCGGTGCTGGTGGGACTGTGGCGTTGGTGCACATACGAGGCCAG
GACCGCTGAGACTTATTTGCGTTTAGCAGCCTTGGCGGCTGCACCATTAT
TACCGCTGTGCATGTTCGTATTTACAAGCCACAAAAGTCTAGAAGGCTGC
AAGTGGCACCTTTTGTTAGCAGCATTGCTGCTGGGATGGGACGCGTACGT
GTTGCATCGCATTTGGCGTAACTTCGTCGTAGGGCCCCGTTTCCAGTCCG
TGGATCTGCACGGTAAAGTCGCCATCGTCACCGGTGCAAATACTGGAATT
GGACGGGAAACGTCCCGTTTTCTTGCGGAAATGGGCGCCAAAGTTATTCT
GGCGTGTCGGTCAAAAGATCGAGCGGAAGAAGCCATCCGAGCAATTTTGT
GGGAATCAGGTTCTAAAATTAAACCCAGTCAATTAGAATTCTGGCCGTTG
GATGTGAGCAGTTTACAGTCCGTTGGAGACTTTGCAGCCGCATTTCAAGA
GAAAGCGGGCCACAAGGGATTGGACATACTCATAAACAACGCGGGCGTAA
TGCTGAATGAGAGGAGGCTCACTTCCGAGGGCCTGGAGGCGACCCTCGCC
ACCAATCATTTCGGCCATTTCCTCTTGACATTGCTCCTTTTCCCAGAACT
TGAGAAGGTCTCGGACGGCCGCGTGGTCAACGTTTCCTCAAGTCTCCACA
AAGTCCCCCGCGCTTTCAATTTTGACGACCCTCTGTACGAGTCCAGTGCC
TATTCCCTGTTCGGAGCCTACGGTCAGAGCAAGCTCGCCAACGTTCTTTT
CACTTTCGAGCTTCAACGACGCCTTGAAGTACTCCAAAGCAACGAAGCAA
ACAAAGTTGGGAGAAAAGGGGAACGGGGAGGCGGAGATCTGGCGGTGAGG
AGGGTCGTAACCGCCAATGCCGTCCATCCGGGCAACGTGCAGACAGAGGT
GGCGCGAAACATGCCTTGGTACTTGTACTGGGGTCAGAGAATTTGCAGTC
CGATTTTATGGTGCTTTTCCAAGAATCCGGCCCAGGGGGCCTATACCTCG
GTCCATGTGGCGACCTCGCCGGCATTGCGAGGCATAGGTGGAAAGTTTTT
TGTGAATTGCGACGTCACGGGCGACGTCTCTGCGGTAGCGCGAGACCCCT
CCGTGGCAGGCCGGCTATGGGCCATGAGTGAAGAAGCGTGCGGACTGACG
GCCGCCACAGGAGATGCCACGGTCGGCTCCTCTTCTGTCAACAGCGGCCC
TCGGAAAAAGAGGAAAACGAACGCTCCCGCAGGTACTATGAGCAACGGGG
ATGAGGCCCGCCATACTACTCCCAAAACCAGCTTGAGAAACGTTCGCACA
GGGGCAAATGGATCGAAAGGAACAAGCCCTGGAGTCAGGAGGAGTGCTCG
TCTCCGTGTTGGCGGGCGGGCCGAGCGAAAAATCGGTTCTAAATAAAGAG
CCTGACAATAAAAAGTACTAACCCATGACGATGCACG back to topprotein sequence of rna1610 >rna1610-protein ID=rna1610-protein|Name=rna1610|organism=Nannochloropsis gaditana|type=polypeptide|length=251bp
MADTTPLPTTNYSLLSNDKNLRMTGGAVARIDGVIVGTYVGEGTHAILEE
LLQRVTRILALRCAQLSPKQRPLFFSEVTCNDIVNFHVGMDKEARVFVVA
VEKSCPVRLSLLAVEEFAKEWGEGQHGNRSLVCVEDGCRFAVREHVMSLA
RRFEDMGAKDQLTRVQAGVEGVRELMQVNISKALEGLQATEDILVRSEEL
KSSALVFKKNATTLKKIMWWQKTRYQLLLGGLIILVAVVLGVVLDITLHK
K back to topmRNA from alignment at CM002457.1:1051609..1053519- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna1610 ID=rna1610|Name=rna1610|organism=Nannochloropsis gaditana|type=mRNA|length=1911bp|location=Sequence derived from alignment at CM002457.1:1051609..1053519- (Nannochloropsis gaditana)
AGAGACTCACAACAGCCAGGCTGCAGATACATGCTTGTTGCCTGCTAATT
TTCAGTCTCCGGAGTCAACGGAAGCTTCGCTCCCTTGTTCTTCTCAGCTT
GGGCCGGCCGTCGTGTTCTTCGATCTGCCCCGTCTGTGAACCATCGCACC
ACCAGAAGGTATCGTCATCGTATCAATGGCCGACACTACACCTCTACCGA
CCACAAACTATTCCTTGCTTTCCAATGACAAGAATTTGCGGATGACGGTA
CGTTCAAGGTTGACGAGCTTTGATCTGGAAGTATTTTATTCCCATCAAGT
GAAGTAGCATCCCTGCGGACATTGATCCAGCATTAAAGGTGGAGGTGGCA
AGTTCGATGTCAATCGAGTTTTGTGAGAGCCAATAGACTAGATTTATGCC
TTCGGTTCCCTCGACTTACCTCTTTGTTCCTCGCCGTGCCTGACTGCTCC
TGATGTCTCCGTGGAAGTAGGGCGGTGCTGTGGCCCGCATCGACGGCGTG
ATAGTGGGCACCTACGTCGGTGAAGGCACGCATGCGATTCTCGAGGAACT
CTTACAACGAGTAACACGGATCTTAGCACTGGTAAGTGTGCAGTCTGCTT
TTGTTGTCCTTTTCTGAATGAAAGAGGACCTTTCTCCAATGCAAGCAAAA
AATTTTGGAAGATCGTGTAGATTTTGATCCCATGGTATGTTTACCTCCCC
GTACTTGTTCTGTAGCTCCATATGAGTCGAAGTGAGCCAAAATTTTCGAG
CAATCTATTTCCTGGTACTTTGGCGTTTTCTGATTCTTTACCCTGCTCCC
TCGCAAAATTTAGCGTTGTGCCCAACTATCCCCAAAGCAACGTCCATTAT
TTTTTAGCGAAGTAACTTGCAATGATATTGTTAATTTTCATGTGGGCATG
GACAAGGAAGCGCGCGTCTTCGTGGTGGCGGTCGAGAAAAGCTGCCCGGT
CCGCCTGTCCCTGTTGGCAGTGGAAGAATTCGCGAAAGAATGGGGCGAGG
GTCAGCATGGAAACCGTTCCCTGGTGTGTGTGGAGGATGGGTGTCGCTTT
GCCGTACGTGAGCATGTTATGAGCCTAGCGAGGCGTTTTGAAGACATGGG
AGCGAAGGACCAGCTGACGAGGGTTCAAGCTGGGGTGGAGGGGGTGAGAG
AGCTGATGCAAGTGAACATCAGCAAGGCTCTGGAGGGTTTGCAGGCAACA
GAGGATATACTGGTCCGCTCCGAGGAATTGAAATCCAGCGCCTTGGTTTT
CAAGAAAAATGCGACGACGTTGAAGAAAATTATGTGGTGGTACGTGTAGA
TCAGCCTTCTCCCCCCCCCCCCGGCCTTGGCTACTTCTTGCTCGCTCGAT
TTTCTCCCCCACCCCCCTGGTTTTGAAACATTAAGTATTTTAAAAAAGAT
GCAGCCTCTTACATTTCTCTTTCTGATGTCTCGTTTAGGCAAAAAACTAG
GTATCAACTCCTGCTCGGCGGGCTGATCATCTTGGTTGCGGTCGTGTTGG
GAGTGGTGCTAGACATTACGCTTCATAAAAAGTAGAGAACATGGAGTGGT
TACCGAAGCGAACGCATGGTCATCTCAAGGGGGAAAAAGAATATACAAGT
CTGGTCTGATGGGAGGGAGGCAGGAGCATACGTACTGTAGAATGACTGGA
GTTTCTTGGGCCAAAATTGATCACCCGAGGCATACGTGACAAAGCCAGGT
TGGCATGTCCATGCTCGATTCAGAAAGTATTTTAGCAAATGACGAGACAG
CCCGGGACGGGAATTCATCTTGCACCTTGATGCACTGGAGTGTGAACCGC
CATGACAGTGGAACGGATGGGGCGGCGCGCAGACTGCCCCGCACGTTGAT
TGGCATGTAACAAGACTCAAAGGATGTAAAAACATAGCGAAAAAATGAAA
ATTGAGATTTT back to topCoding sequence (CDS) from alignment at CM002457.1:1051609..1053519- >rna1610 ID=rna1610|Name=rna1610|organism=Nannochloropsis gaditana|type=CDS|length=3024bp|location=Sequence derived from alignment at CM002457.1:1051609..1053519- (Nannochloropsis gaditana)
GCAAAAAACTAGGTATCAACTCCTGCTCGGCGGGCTGATCATCTTGGTTG
CGGTCGTGTTGGGAGTGGTGCTAGACATTACGCTTCATAAAAAGTAGCGT
TGTGCCCAACTATCCCCAAAGCAACGTCCATTATTTTTTAGCGAAGTAAC
TTGCAATGATATTGTTAATTTTCATGTGGGCATGGACAAGGAAGCGCGCG
TCTTCGTGGTGGCGGTCGAGAAAAGCTGCCCGGTCCGCCTGTCCCTGTTG
GCAGTGGAAGAATTCGCGAAAGAATGGGGCGAGGGTCAGCATGGAAACCG
TTCCCTGGTGTGTGTGGAGGATGGGTGTCGCTTTGCCGTACGTGAGCATG
TTATGAGCCTAGCGAGGCGTTTTGAAGACATGGGAGCGAAGGACCAGCTG
ACGAGGGTTCAAGCTGGGGTGGAGGGGGTGAGAGAGCTGATGCAAGTGAA
CATCAGCAAGGCTCTGGAGGGTTTGCAGGCAACAGAGGATATACTGGTCC
GCTCCGAGGAATTGAAATCCAGCGCCTTGGTTTTCAAGAAAAATGCGACG
ACGTTGAAGAAAATTATGTGGTGGGCGGTGCTGTGGCCCGCATCGACGGC
GTGATAGTGGGCACCTACGTCGGTGAAGGCACGCATGCGATTCTCGAGGA
ACTCTTACAACGAGTAACACGGATCTTAGCACTGATGGCCGACACTACAC
CTCTACCGACCACAAACTATTCCTTGCTTTCCAATGACAAGAATTTGCGG
ATGACGGCAAAAAACTAGGTATCAACTCCTGCTCGGCGGGCTGATCATCT
TGGTTGCGGTCGTGTTGGGAGTGGTGCTAGACATTACGCTTCATAAAAAG
TAGCGTTGTGCCCAACTATCCCCAAAGCAACGTCCATTATTTTTTAGCGA
AGTAACTTGCAATGATATTGTTAATTTTCATGTGGGCATGGACAAGGAAG
CGCGCGTCTTCGTGGTGGCGGTCGAGAAAAGCTGCCCGGTCCGCCTGTCC
CTGTTGGCAGTGGAAGAATTCGCGAAAGAATGGGGCGAGGGTCAGCATGG
AAACCGTTCCCTGGTGTGTGTGGAGGATGGGTGTCGCTTTGCCGTACGTG
AGCATGTTATGAGCCTAGCGAGGCGTTTTGAAGACATGGGAGCGAAGGAC
CAGCTGACGAGGGTTCAAGCTGGGGTGGAGGGGGTGAGAGAGCTGATGCA
AGTGAACATCAGCAAGGCTCTGGAGGGTTTGCAGGCAACAGAGGATATAC
TGGTCCGCTCCGAGGAATTGAAATCCAGCGCCTTGGTTTTCAAGAAAAAT
GCGACGACGTTGAAGAAAATTATGTGGTGGGCGGTGCTGTGGCCCGCATC
GACGGCGTGATAGTGGGCACCTACGTCGGTGAAGGCACGCATGCGATTCT
CGAGGAACTCTTACAACGAGTAACACGGATCTTAGCACTGATGGCCGACA
CTACACCTCTACCGACCACAAACTATTCCTTGCTTTCCAATGACAAGAAT
TTGCGGATGACGGCAAAAAACTAGGTATCAACTCCTGCTCGGCGGGCTGA
TCATCTTGGTTGCGGTCGTGTTGGGAGTGGTGCTAGACATTACGCTTCAT
AAAAAGTAGCGTTGTGCCCAACTATCCCCAAAGCAACGTCCATTATTTTT
TAGCGAAGTAACTTGCAATGATATTGTTAATTTTCATGTGGGCATGGACA
AGGAAGCGCGCGTCTTCGTGGTGGCGGTCGAGAAAAGCTGCCCGGTCCGC
CTGTCCCTGTTGGCAGTGGAAGAATTCGCGAAAGAATGGGGCGAGGGTCA
GCATGGAAACCGTTCCCTGGTGTGTGTGGAGGATGGGTGTCGCTTTGCCG
TACGTGAGCATGTTATGAGCCTAGCGAGGCGTTTTGAAGACATGGGAGCG
AAGGACCAGCTGACGAGGGTTCAAGCTGGGGTGGAGGGGGTGAGAGAGCT
GATGCAAGTGAACATCAGCAAGGCTCTGGAGGGTTTGCAGGCAACAGAGG
ATATACTGGTCCGCTCCGAGGAATTGAAATCCAGCGCCTTGGTTTTCAAG
AAAAATGCGACGACGTTGAAGAAAATTATGTGGTGGGCGGTGCTGTGGCC
CGCATCGACGGCGTGATAGTGGGCACCTACGTCGGTGAAGGCACGCATGC
GATTCTCGAGGAACTCTTACAACGAGTAACACGGATCTTAGCACTGATGG
CCGACACTACACCTCTACCGACCACAAACTATTCCTTGCTTTCCAATGAC
AAGAATTTGCGGATGACGGCAAAAAACTAGGTATCAACTCCTGCTCGGCG
GGCTGATCATCTTGGTTGCGGTCGTGTTGGGAGTGGTGCTAGACATTACG
CTTCATAAAAAGTAGCGTTGTGCCCAACTATCCCCAAAGCAACGTCCATT
ATTTTTTAGCGAAGTAACTTGCAATGATATTGTTAATTTTCATGTGGGCA
TGGACAAGGAAGCGCGCGTCTTCGTGGTGGCGGTCGAGAAAAGCTGCCCG
GTCCGCCTGTCCCTGTTGGCAGTGGAAGAATTCGCGAAAGAATGGGGCGA
GGGTCAGCATGGAAACCGTTCCCTGGTGTGTGTGGAGGATGGGTGTCGCT
TTGCCGTACGTGAGCATGTTATGAGCCTAGCGAGGCGTTTTGAAGACATG
GGAGCGAAGGACCAGCTGACGAGGGTTCAAGCTGGGGTGGAGGGGGTGAG
AGAGCTGATGCAAGTGAACATCAGCAAGGCTCTGGAGGGTTTGCAGGCAA
CAGAGGATATACTGGTCCGCTCCGAGGAATTGAAATCCAGCGCCTTGGTT
TTCAAGAAAAATGCGACGACGTTGAAGAAAATTATGTGGTGGGCGGTGCT
GTGGCCCGCATCGACGGCGTGATAGTGGGCACCTACGTCGGTGAAGGCAC
GCATGCGATTCTCGAGGAACTCTTACAACGAGTAACACGGATCTTAGCAC
TGATGGCCGACACTACACCTCTACCGACCACAAACTATTCCTTGCTTTCC
AATGACAAGAATTTGCGGATGACG back to top
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