EWM29065.1, cds1606 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29065.1 vs. NCBI_GenBank
Match: gi|585111584|gb|EWM29065.1| (Synaptobrevin [Nannochloropsis gaditana]) HSP 1 Score: 513.842 bits (1322), Expect = 0.000e+0 Identity = 251/251 (100.00%), Postives = 251/251 (100.00%), Query Frame = 0
Query: 1 MADTTPLPTTNYSLLSNDKNLRMTGGAVARIDGVIVGTYVGEGTHAILEELLQRVTRILALRCAQLSPKQRPLFFSEVTCNDIVNFHVGMDKEARVFVVAVEKSCPVRLSLLAVEEFAKEWGEGQHGNRSLVCVEDGCRFAVREHVMSLARRFEDMGAKDQLTRVQAGVEGVRELMQVNISKALEGLQATEDILVRSEELKSSALVFKKNATTLKKIMWWQKTRYQLLLGGLIILVAVVLGVVLDITLHKK 251
MADTTPLPTTNYSLLSNDKNLRMTGGAVARIDGVIVGTYVGEGTHAILEELLQRVTRILALRCAQLSPKQRPLFFSEVTCNDIVNFHVGMDKEARVFVVAVEKSCPVRLSLLAVEEFAKEWGEGQHGNRSLVCVEDGCRFAVREHVMSLARRFEDMGAKDQLTRVQAGVEGVRELMQVNISKALEGLQATEDILVRSEELKSSALVFKKNATTLKKIMWWQKTRYQLLLGGLIILVAVVLGVVLDITLHKK
Sbjct: 1 MADTTPLPTTNYSLLSNDKNLRMTGGAVARIDGVIVGTYVGEGTHAILEELLQRVTRILALRCAQLSPKQRPLFFSEVTCNDIVNFHVGMDKEARVFVVAVEKSCPVRLSLLAVEEFAKEWGEGQHGNRSLVCVEDGCRFAVREHVMSLARRFEDMGAKDQLTRVQAGVEGVRELMQVNISKALEGLQATEDILVRSEELKSSALVFKKNATTLKKIMWWQKTRYQLLLGGLIILVAVVLGVVLDITLHKK 251
BLAST of EWM29065.1 vs. NCBI_GenBank
Match: gi|953499896|emb|CEG38537.1| (vesicle-associated membrane protein 7b [Plasmopara halstedii]) HSP 1 Score: 88.1965 bits (217), Expect = 2.503e-17 Identity = 64/230 (27.83%), Postives = 106/230 (46.09%), Query Frame = 0
Query: 27 AVAR-IDGVIVGTYV---------GEGTHAILEELLQRVTRILALRCAQLSPKQRPLFFSEVTCNDIVNFHVGMDKEARVFVVAVEKSCPVRLSLLAVEEFAKEWGEGQHGNRSLVCVEDGCRFAVREHVMSLARRFEDMGAKDQLTRVQAGVEGVRELMQVNISKALEGLQATEDILVRSEELKSSALVFKKNATTLKKIMWWQKTRYQLLLGGLIILVAVVLGVVLDI 246
A+AR D VIV Y+ GEG + E+L +V R + Q++P R + C D FH M+ + VF K P+RL+ + E + G+++L C E+G + ++A ++D D+L+ V V+GV+ +M NI L + E + ++ +L A VF+ L++ MWW+ + +LL ILV +L VL +
Sbjct: 19 AIARATDKVIVACYMHTAGKPVRNGEGDMNVFREMLSKVIRAPTWK-TQVTPNGR----HSLDC-DPNKFHFTMNNDELVFAAITSKDYPIRLAFQMISAIQTEIIP-KFGSKALTCRENGLDKDCAKIFTAIAAGYDDRTKVDKLSDVMHQVDGVKTVMHNNIQVVLSNTEKMEVVEQKTNDLNEQAKVFRNTGRKLRRQMWWKNVKLTILLSVCAILVLFILLAVLGV 241
BLAST of EWM29065.1 vs. NCBI_GenBank
Match: gi|566027736|gb|ETI50647.1| (hypothetical protein F443_05805 [Phytophthora parasitica P1569] >gi|568023109|gb|ETL97173.1| hypothetical protein L917_05497 [Phytophthora parasitica] >gi|568053500|gb|ETM50327.1| hypothetical protein L914_05615 [Phytophthora parasitica] >gi|570331522|gb|ETO79470.1| hypothetical protein F444_05853 [Phytophthora parasitica P1976]) HSP 1 Score: 82.0333 bits (201), Expect = 4.954e-15 Identity = 58/215 (26.98%), Postives = 99/215 (46.05%), Query Frame = 0
Query: 27 AVAR-IDGVIVGTYV----------GEGTHAILEELLQRVTRILALRCAQLSPKQRPLFFSEVTCNDIVNFHVGMDKEARVFVVAVEKSCPVRLSLLAVEEFAKEWGEGQHGNRSLVCVEDGCRFAVREHVMSLARRFEDMGAKDQLTRVQAGVEGVRELMQVNISKALEGLQATEDILVRSEELKSSALVFKKNATTLKKIMWWQKTRYQLLLG 230
A+AR D VIV +Y+ GE E+L +V R + Q++P R + C D FH M+ + VF K P+RL+ + E ++G+++L C E+G + ++A ++D D+L+ V V+GV+ +M NI L + E + ++ +L A VF+ L++ MWW+ + +LLG
Sbjct: 20 AIARATDKVIVASYMHQSGGKPARGGEAEVNTFREMLSKVIRAPTWK-TQVTPNGR----HSLEC-DPNKFHFTMNNDELVFAAITAKDYPIRLAFQMISAVQTEIVP-KYGSKALTCRENGLDKDCAKAFAAIASGYDDRTKVDKLSEVMHQVDGVKTVMHNNIQVVLSNTEKMEVVEQKTNDLNEQAKVFRNTGRKLRRQMWWKNVKLTILLG 227
BLAST of EWM29065.1 vs. NCBI_GenBank
Match: gi|585109447|gb|EWM27266.1| (r-snare vamp72-family [Nannochloropsis gaditana]) HSP 1 Score: 81.6481 bits (200), Expect = 5.644e-15 Identity = 46/146 (31.51%), Postives = 87/146 (59.59%), Query Frame = 0
Query: 85 NFHVGMDKEARVFVVAVEKSCPVRLSLLAVEEFAKEWGEGQHGNRSLVCVEDGCRFAVREHVMSLARRFEDMGAKDQLTRVQAGVEGVRELMQVNISKALEGLQATEDILVRSEELKSSALVFKKNATTLKKIMWWQKTRYQLLLG 230
++H+ D E R+F++ E++ PVR + +EEF + + + G +SL E G + E + L +++++ D+L V V+ V+ ++Q N+ AL A ++I +E+L++ A +FK+NATTLKK M W++ R ++++G
Sbjct: 63 SWHLMSDVEGRIFILISERTYPVRAAHACLEEFQRSF-LAKTGTKSLEVKEKGLDKSSGEMLRKLCEKYDNLAEVDKLAAVMNKVDAVKLVLQENVQVALANCVALDNIEKAAEDLQAQAGMFKRNATTLKKQMCWKQLRMKMVMG 207
BLAST of EWM29065.1 vs. NCBI_GenBank
Match: gi|675188869|ref|XP_008903319.1| (hypothetical protein PPTG_10394 [Phytophthora parasitica INRA-310] >gi|567993853|gb|ETL44021.1| hypothetical protein L916_05611 [Phytophthora parasitica] >gi|568096781|gb|ETN11528.1| hypothetical protein PPTG_10394 [Phytophthora parasitica INRA-310] >gi|970660753|gb|KUF98278.1| hypothetical protein AM588_10010877 [Phytophthora nicotianae]) HSP 1 Score: 80.8777 bits (198), Expect = 1.674e-14 Identity = 58/215 (26.98%), Postives = 99/215 (46.05%), Query Frame = 0
Query: 27 AVAR-IDGVIVGTYV----------GEGTHAILEELLQRVTRILALRCAQLSPKQRPLFFSEVTCNDIVNFHVGMDKEARVFVVAVEKSCPVRLSLLAVEEFAKEWGEGQHGNRSLVCVEDGCRFAVREHVMSLARRFEDMGAKDQLTRVQAGVEGVRELMQVNISKALEGLQATEDILVRSEELKSSALVFKKNATTLKKIMWWQKTRYQLLLG 230
A+AR D VIV +Y+ GE E+L +V R + Q++P R + C D FH M+ + VF K P+RL+ + E ++G+++L C E+G + ++A ++D D+L+ V V+GV+ +M NI L + E + ++ +L A VF+ L++ MWW+ + +LLG
Sbjct: 20 AIARATDKVIVASYMHQSGGKPARGGEVEVNTFREMLSKVIRAPTWK-TQVTPNGR----HSLEC-DPNKFHFTMNNDELVFAAITAKDYPIRLAFQMISAVQTEIVP-KYGSKALTCRENGLDKDCAKAFAAIASGYDDRTKVDKLSEVMHQVDGVKTVMHNNIQVVLSNTEKMEVVEQKTNDLNEQAKVFRNTGRKLRRQMWWKNVKLTILLG 227
BLAST of EWM29065.1 vs. NCBI_GenBank
Match: gi|635364142|emb|CCI47366.1| (unnamed protein product [Albugo candida]) HSP 1 Score: 82.8037 bits (203), Expect = 2.289e-14 Identity = 59/234 (25.21%), Postives = 107/234 (45.73%), Query Frame = 0
Query: 19 KNLRMTGGAVARIDGVIVGTYVGEGTHAI---------LEELLQRVTRILALRCAQLSPKQRPLFFSEVTCNDIVNFHVGMDKEARVFVVAVEKSCPVRLSLLAVEEFAKEWGEGQHGNRSLVCVEDGCRFAVREHVMSLARRFEDMGAKDQLTRVQAGVEGVRELMQVNISKALEGLQATEDILVRSEELKSSALVFKKNATTLKKIMWWQKTRYQLLLGGLIILVAVVLGVV 243
+N++ G A A D I+ Y ++ +E+ +V R + Q++P R + C D FH M + VF V KS P+RL+ ++ +E+ + ++L C E G + V +LA +++D D+++ V V+ V+ +M NI L + E + ++ +L A VF+ + L+K MWW+ + + +G ILV V++ V
Sbjct: 534 ENIKFIGIARA-TDKAIICCYFHSNKSSMNVDLAECTKWKEMYAKVLRAPTWK-TQVTPNAR----HSLDC-DPNKFHFSMSNDELVFAVITVKSYPIRLAFQLIQTLQQEFV-PKFATKALSCREHGLDKECKSMVQALATQYDDRTKVDKISEVLHQVDNVKSVMHTNIQVVLSNTEKMEVVEQKTNDLSEQAKVFRNSGRKLRKAMWWKNVKLTIAIGLCAILVIVIILAV 759
BLAST of EWM29065.1 vs. NCBI_GenBank
Match: gi|635364145|emb|CCI47369.1| (unnamed protein product [Albugo candida]) HSP 1 Score: 82.4185 bits (202), Expect = 2.545e-14 Identity = 59/234 (25.21%), Postives = 107/234 (45.73%), Query Frame = 0
Query: 19 KNLRMTGGAVARIDGVIVGTYVGEGTHAI---------LEELLQRVTRILALRCAQLSPKQRPLFFSEVTCNDIVNFHVGMDKEARVFVVAVEKSCPVRLSLLAVEEFAKEWGEGQHGNRSLVCVEDGCRFAVREHVMSLARRFEDMGAKDQLTRVQAGVEGVRELMQVNISKALEGLQATEDILVRSEELKSSALVFKKNATTLKKIMWWQKTRYQLLLGGLIILVAVVLGVV 243
+N++ G A A D I+ Y ++ +E+ +V R + Q++P R + C D FH M + VF V KS P+RL+ ++ +E+ + ++L C E G + V +LA +++D D+++ V V+ V+ +M NI L + E + ++ +L A VF+ + L+K MWW+ + + +G ILV V++ V
Sbjct: 431 ENIKFIGIARA-TDKAIICCYFHSNKSSMNVDLAECTKWKEMYAKVLRAPTWK-TQVTPNAR----HSLDC-DPNKFHFSMSNDELVFAVITVKSYPIRLAFQLIQTLQQEFV-PKFATKALSCREHGLDKECKSMVQALATQYDDRTKVDKISEVLHQVDNVKSVMHTNIQVVLSNTEKMEVVEQKTNDLSEQAKVFRNSGRKLRKAMWWKNVKLTIAIGLCAILVIVIILAV 656
BLAST of EWM29065.1 vs. NCBI_GenBank
Match: gi|635364144|emb|CCI47368.1| (unnamed protein product [Albugo candida]) HSP 1 Score: 82.4185 bits (202), Expect = 2.734e-14 Identity = 59/234 (25.21%), Postives = 107/234 (45.73%), Query Frame = 0
Query: 19 KNLRMTGGAVARIDGVIVGTYVGEGTHAI---------LEELLQRVTRILALRCAQLSPKQRPLFFSEVTCNDIVNFHVGMDKEARVFVVAVEKSCPVRLSLLAVEEFAKEWGEGQHGNRSLVCVEDGCRFAVREHVMSLARRFEDMGAKDQLTRVQAGVEGVRELMQVNISKALEGLQATEDILVRSEELKSSALVFKKNATTLKKIMWWQKTRYQLLLGGLIILVAVVLGVV 243
+N++ G A A D I+ Y ++ +E+ +V R + Q++P R + C D FH M + VF V KS P+RL+ ++ +E+ + ++L C E G + V +LA +++D D+++ V V+ V+ +M NI L + E + ++ +L A VF+ + L+K MWW+ + + +G ILV V++ V
Sbjct: 461 ENIKFIGIARA-TDKAIICCYFHSNKSSMNVDLAECTKWKEMYAKVLRAPTWK-TQVTPNAR----HSLDC-DPNKFHFSMSNDELVFAVITVKSYPIRLAFQLIQTLQQEFV-PKFATKALSCREHGLDKECKSMVQALATQYDDRTKVDKISEVLHQVDNVKSVMHTNIQVVLSNTEKMEVVEQKTNDLSEQAKVFRNSGRKLRKAMWWKNVKLTIAIGLCAILVIVIILAV 686
BLAST of EWM29065.1 vs. NCBI_GenBank
Match: gi|635364143|emb|CCI47367.1| (unnamed protein product [Albugo candida]) HSP 1 Score: 82.4185 bits (202), Expect = 2.817e-14 Identity = 59/234 (25.21%), Postives = 107/234 (45.73%), Query Frame = 0
Query: 19 KNLRMTGGAVARIDGVIVGTYVGEGTHAI---------LEELLQRVTRILALRCAQLSPKQRPLFFSEVTCNDIVNFHVGMDKEARVFVVAVEKSCPVRLSLLAVEEFAKEWGEGQHGNRSLVCVEDGCRFAVREHVMSLARRFEDMGAKDQLTRVQAGVEGVRELMQVNISKALEGLQATEDILVRSEELKSSALVFKKNATTLKKIMWWQKTRYQLLLGGLIILVAVVLGVV 243
+N++ G A A D I+ Y ++ +E+ +V R + Q++P R + C D FH M + VF V KS P+RL+ ++ +E+ + ++L C E G + V +LA +++D D+++ V V+ V+ +M NI L + E + ++ +L A VF+ + L+K MWW+ + + +G ILV V++ V
Sbjct: 465 ENIKFIGIARA-TDKAIICCYFHSNKSSMNVDLAECTKWKEMYAKVLRAPTWK-TQVTPNAR----HSLDC-DPNKFHFSMSNDELVFAVITVKSYPIRLAFQLIQTLQQEFV-PKFATKALSCREHGLDKECKSMVQALATQYDDRTKVDKISEVLHQVDNVKSVMHTNIQVVLSNTEKMEVVEQKTNDLSEQAKVFRNSGRKLRKAMWWKNVKLTIAIGLCAILVIVIILAV 690
BLAST of EWM29065.1 vs. NCBI_GenBank
Match: gi|325183073|emb|CCA17529.1| (conserved hypothetical protein [Albugo laibachii Nc14]) HSP 1 Score: 80.4925 bits (197), Expect = 3.125e-14 Identity = 59/232 (25.43%), Postives = 105/232 (45.26%), Query Frame = 0
Query: 20 NLRMTGGAVARIDGVI--------VGTYVGEGTHAILEELLQRVTRILALRCAQLSPKQRPLFFSEVTCNDIVNFHVGMDKEARVFVVAVEKSCPVRLSLLAVEEFAKEWGEGQHGNRSLVCVEDGCRFAVREHVMSLARRFEDMGAKDQLTRVQAGVEGVRELMQVNISKALEGLQATEDILVRSEELKSSALVFKKNATTLKKIMWWQKTRYQLLLGGLIILVAVVLGVV 243
N++ G A A +I T V A +E+ +V R + Q++P R + C D FH M + VF V KS P+RL+ ++ +E+ + ++L C E G + + +LA +++D D+++ V V+ V+ +M NI L + E + ++ +L A VF+ + L+K MWW+ + + +G ILV V++ V
Sbjct: 42 NIKFIGVARATDKAIICCYFHSAKASTNVDLAECAKWKEMYAKVLRAPTWK-TQVTPNAR----HSLDC-DPNKFHFSMSNDELVFAVITVKSYPIRLAFQLIQTLQQEFV-PKFATKALNCREHGLDKECKSMMQTLANQYDDRTKVDKISEVLHQVDNVKSVMHTNIQVVLSNTEKMEVVEQKTNDLSEQAKVFRNSGRKLRKAMWWKNVKLTIAIGLCAILVIVIILAV 266 The following BLAST results are available for this feature:
BLAST of EWM29065.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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