EWM29065.1, cds1606 (CDS) Nannochloropsis gaditana

Overview
NameEWM29065.1
Unique Namecds1606
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:1053273..1053344 -
Alignment locationCM002457.1:1052939..1053049 -
Alignment locationCM002457.1:1052231..1052706 -
Alignment locationCM002457.1:1051985..1052081 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM29065.1
ProductSynaptobrevin
Orig transcript idgnl|cribi|Naga_100024g26.4323.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:1053273..1053344 -
CM002457.1supercontigCM002457.1:1052939..1053049 -
CM002457.1supercontigCM002457.1:1052231..1052706 -
CM002457.1supercontigCM002457.1:1051985..1052081 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
GO:0016192vesicle-mediated transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0016021integral component of membrane
Vocabulary: INTERPRO
TermDefinition
IPR001388Synaptobrevin
Homology
BLAST of EWM29065.1 vs. NCBI_GenBank
Match: gi|585111584|gb|EWM29065.1| (Synaptobrevin [Nannochloropsis gaditana])

HSP 1 Score: 513.842 bits (1322), Expect = 0.000e+0
Identity = 251/251 (100.00%), Postives = 251/251 (100.00%), Query Frame = 0
Query:    1 MADTTPLPTTNYSLLSNDKNLRMTGGAVARIDGVIVGTYVGEGTHAILEELLQRVTRILALRCAQLSPKQRPLFFSEVTCNDIVNFHVGMDKEARVFVVAVEKSCPVRLSLLAVEEFAKEWGEGQHGNRSLVCVEDGCRFAVREHVMSLARRFEDMGAKDQLTRVQAGVEGVRELMQVNISKALEGLQATEDILVRSEELKSSALVFKKNATTLKKIMWWQKTRYQLLLGGLIILVAVVLGVVLDITLHKK 251
            MADTTPLPTTNYSLLSNDKNLRMTGGAVARIDGVIVGTYVGEGTHAILEELLQRVTRILALRCAQLSPKQRPLFFSEVTCNDIVNFHVGMDKEARVFVVAVEKSCPVRLSLLAVEEFAKEWGEGQHGNRSLVCVEDGCRFAVREHVMSLARRFEDMGAKDQLTRVQAGVEGVRELMQVNISKALEGLQATEDILVRSEELKSSALVFKKNATTLKKIMWWQKTRYQLLLGGLIILVAVVLGVVLDITLHKK
Sbjct:    1 MADTTPLPTTNYSLLSNDKNLRMTGGAVARIDGVIVGTYVGEGTHAILEELLQRVTRILALRCAQLSPKQRPLFFSEVTCNDIVNFHVGMDKEARVFVVAVEKSCPVRLSLLAVEEFAKEWGEGQHGNRSLVCVEDGCRFAVREHVMSLARRFEDMGAKDQLTRVQAGVEGVRELMQVNISKALEGLQATEDILVRSEELKSSALVFKKNATTLKKIMWWQKTRYQLLLGGLIILVAVVLGVVLDITLHKK 251          
BLAST of EWM29065.1 vs. NCBI_GenBank
Match: gi|953499896|emb|CEG38537.1| (vesicle-associated membrane protein 7b [Plasmopara halstedii])

HSP 1 Score: 88.1965 bits (217), Expect = 2.503e-17
Identity = 64/230 (27.83%), Postives = 106/230 (46.09%), Query Frame = 0
Query:   27 AVAR-IDGVIVGTYV---------GEGTHAILEELLQRVTRILALRCAQLSPKQRPLFFSEVTCNDIVNFHVGMDKEARVFVVAVEKSCPVRLSLLAVEEFAKEWGEGQHGNRSLVCVEDGCRFAVREHVMSLARRFEDMGAKDQLTRVQAGVEGVRELMQVNISKALEGLQATEDILVRSEELKSSALVFKKNATTLKKIMWWQKTRYQLLLGGLIILVAVVLGVVLDI 246
            A+AR  D VIV  Y+         GEG   +  E+L +V R    +  Q++P  R      + C D   FH  M+ +  VF     K  P+RL+   +     E    + G+++L C E+G      +   ++A  ++D    D+L+ V   V+GV+ +M  NI   L   +  E +  ++ +L   A VF+     L++ MWW+  +  +LL    ILV  +L  VL +
Sbjct:   19 AIARATDKVIVACYMHTAGKPVRNGEGDMNVFREMLSKVIRAPTWK-TQVTPNGR----HSLDC-DPNKFHFTMNNDELVFAAITSKDYPIRLAFQMISAIQTEIIP-KFGSKALTCRENGLDKDCAKIFTAIAAGYDDRTKVDKLSDVMHQVDGVKTVMHNNIQVVLSNTEKMEVVEQKTNDLNEQAKVFRNTGRKLRRQMWWKNVKLTILLSVCAILVLFILLAVLGV 241          
BLAST of EWM29065.1 vs. NCBI_GenBank
Match: gi|566027736|gb|ETI50647.1| (hypothetical protein F443_05805 [Phytophthora parasitica P1569] >gi|568023109|gb|ETL97173.1| hypothetical protein L917_05497 [Phytophthora parasitica] >gi|568053500|gb|ETM50327.1| hypothetical protein L914_05615 [Phytophthora parasitica] >gi|570331522|gb|ETO79470.1| hypothetical protein F444_05853 [Phytophthora parasitica P1976])

HSP 1 Score: 82.0333 bits (201), Expect = 4.954e-15
Identity = 58/215 (26.98%), Postives = 99/215 (46.05%), Query Frame = 0
Query:   27 AVAR-IDGVIVGTYV----------GEGTHAILEELLQRVTRILALRCAQLSPKQRPLFFSEVTCNDIVNFHVGMDKEARVFVVAVEKSCPVRLSLLAVEEFAKEWGEGQHGNRSLVCVEDGCRFAVREHVMSLARRFEDMGAKDQLTRVQAGVEGVRELMQVNISKALEGLQATEDILVRSEELKSSALVFKKNATTLKKIMWWQKTRYQLLLG 230
            A+AR  D VIV +Y+          GE       E+L +V R    +  Q++P  R      + C D   FH  M+ +  VF     K  P+RL+   +     E    ++G+++L C E+G      +   ++A  ++D    D+L+ V   V+GV+ +M  NI   L   +  E +  ++ +L   A VF+     L++ MWW+  +  +LLG
Sbjct:   20 AIARATDKVIVASYMHQSGGKPARGGEAEVNTFREMLSKVIRAPTWK-TQVTPNGR----HSLEC-DPNKFHFTMNNDELVFAAITAKDYPIRLAFQMISAVQTEIVP-KYGSKALTCRENGLDKDCAKAFAAIASGYDDRTKVDKLSEVMHQVDGVKTVMHNNIQVVLSNTEKMEVVEQKTNDLNEQAKVFRNTGRKLRRQMWWKNVKLTILLG 227          
BLAST of EWM29065.1 vs. NCBI_GenBank
Match: gi|585109447|gb|EWM27266.1| (r-snare vamp72-family [Nannochloropsis gaditana])

HSP 1 Score: 81.6481 bits (200), Expect = 5.644e-15
Identity = 46/146 (31.51%), Postives = 87/146 (59.59%), Query Frame = 0
Query:   85 NFHVGMDKEARVFVVAVEKSCPVRLSLLAVEEFAKEWGEGQHGNRSLVCVEDGCRFAVREHVMSLARRFEDMGAKDQLTRVQAGVEGVRELMQVNISKALEGLQATEDILVRSEELKSSALVFKKNATTLKKIMWWQKTRYQLLLG 230
            ++H+  D E R+F++  E++ PVR +   +EEF + +   + G +SL   E G   +  E +  L  +++++   D+L  V   V+ V+ ++Q N+  AL    A ++I   +E+L++ A +FK+NATTLKK M W++ R ++++G
Sbjct:   63 SWHLMSDVEGRIFILISERTYPVRAAHACLEEFQRSF-LAKTGTKSLEVKEKGLDKSSGEMLRKLCEKYDNLAEVDKLAAVMNKVDAVKLVLQENVQVALANCVALDNIEKAAEDLQAQAGMFKRNATTLKKQMCWKQLRMKMVMG 207          
BLAST of EWM29065.1 vs. NCBI_GenBank
Match: gi|675188869|ref|XP_008903319.1| (hypothetical protein PPTG_10394 [Phytophthora parasitica INRA-310] >gi|567993853|gb|ETL44021.1| hypothetical protein L916_05611 [Phytophthora parasitica] >gi|568096781|gb|ETN11528.1| hypothetical protein PPTG_10394 [Phytophthora parasitica INRA-310] >gi|970660753|gb|KUF98278.1| hypothetical protein AM588_10010877 [Phytophthora nicotianae])

HSP 1 Score: 80.8777 bits (198), Expect = 1.674e-14
Identity = 58/215 (26.98%), Postives = 99/215 (46.05%), Query Frame = 0
Query:   27 AVAR-IDGVIVGTYV----------GEGTHAILEELLQRVTRILALRCAQLSPKQRPLFFSEVTCNDIVNFHVGMDKEARVFVVAVEKSCPVRLSLLAVEEFAKEWGEGQHGNRSLVCVEDGCRFAVREHVMSLARRFEDMGAKDQLTRVQAGVEGVRELMQVNISKALEGLQATEDILVRSEELKSSALVFKKNATTLKKIMWWQKTRYQLLLG 230
            A+AR  D VIV +Y+          GE       E+L +V R    +  Q++P  R      + C D   FH  M+ +  VF     K  P+RL+   +     E    ++G+++L C E+G      +   ++A  ++D    D+L+ V   V+GV+ +M  NI   L   +  E +  ++ +L   A VF+     L++ MWW+  +  +LLG
Sbjct:   20 AIARATDKVIVASYMHQSGGKPARGGEVEVNTFREMLSKVIRAPTWK-TQVTPNGR----HSLEC-DPNKFHFTMNNDELVFAAITAKDYPIRLAFQMISAVQTEIVP-KYGSKALTCRENGLDKDCAKAFAAIASGYDDRTKVDKLSEVMHQVDGVKTVMHNNIQVVLSNTEKMEVVEQKTNDLNEQAKVFRNTGRKLRRQMWWKNVKLTILLG 227          
BLAST of EWM29065.1 vs. NCBI_GenBank
Match: gi|635364142|emb|CCI47366.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 82.8037 bits (203), Expect = 2.289e-14
Identity = 59/234 (25.21%), Postives = 107/234 (45.73%), Query Frame = 0
Query:   19 KNLRMTGGAVARIDGVIVGTYVGEGTHAI---------LEELLQRVTRILALRCAQLSPKQRPLFFSEVTCNDIVNFHVGMDKEARVFVVAVEKSCPVRLSLLAVEEFAKEWGEGQHGNRSLVCVEDGCRFAVREHVMSLARRFEDMGAKDQLTRVQAGVEGVRELMQVNISKALEGLQATEDILVRSEELKSSALVFKKNATTLKKIMWWQKTRYQLLLGGLIILVAVVLGVV 243
            +N++  G A A  D  I+  Y      ++          +E+  +V R    +  Q++P  R      + C D   FH  M  +  VF V   KS P+RL+   ++   +E+   +   ++L C E G     +  V +LA +++D    D+++ V   V+ V+ +M  NI   L   +  E +  ++ +L   A VF+ +   L+K MWW+  +  + +G   ILV V++  V
Sbjct:  534 ENIKFIGIARA-TDKAIICCYFHSNKSSMNVDLAECTKWKEMYAKVLRAPTWK-TQVTPNAR----HSLDC-DPNKFHFSMSNDELVFAVITVKSYPIRLAFQLIQTLQQEFV-PKFATKALSCREHGLDKECKSMVQALATQYDDRTKVDKISEVLHQVDNVKSVMHTNIQVVLSNTEKMEVVEQKTNDLSEQAKVFRNSGRKLRKAMWWKNVKLTIAIGLCAILVIVIILAV 759          
BLAST of EWM29065.1 vs. NCBI_GenBank
Match: gi|635364145|emb|CCI47369.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 82.4185 bits (202), Expect = 2.545e-14
Identity = 59/234 (25.21%), Postives = 107/234 (45.73%), Query Frame = 0
Query:   19 KNLRMTGGAVARIDGVIVGTYVGEGTHAI---------LEELLQRVTRILALRCAQLSPKQRPLFFSEVTCNDIVNFHVGMDKEARVFVVAVEKSCPVRLSLLAVEEFAKEWGEGQHGNRSLVCVEDGCRFAVREHVMSLARRFEDMGAKDQLTRVQAGVEGVRELMQVNISKALEGLQATEDILVRSEELKSSALVFKKNATTLKKIMWWQKTRYQLLLGGLIILVAVVLGVV 243
            +N++  G A A  D  I+  Y      ++          +E+  +V R    +  Q++P  R      + C D   FH  M  +  VF V   KS P+RL+   ++   +E+   +   ++L C E G     +  V +LA +++D    D+++ V   V+ V+ +M  NI   L   +  E +  ++ +L   A VF+ +   L+K MWW+  +  + +G   ILV V++  V
Sbjct:  431 ENIKFIGIARA-TDKAIICCYFHSNKSSMNVDLAECTKWKEMYAKVLRAPTWK-TQVTPNAR----HSLDC-DPNKFHFSMSNDELVFAVITVKSYPIRLAFQLIQTLQQEFV-PKFATKALSCREHGLDKECKSMVQALATQYDDRTKVDKISEVLHQVDNVKSVMHTNIQVVLSNTEKMEVVEQKTNDLSEQAKVFRNSGRKLRKAMWWKNVKLTIAIGLCAILVIVIILAV 656          
BLAST of EWM29065.1 vs. NCBI_GenBank
Match: gi|635364144|emb|CCI47368.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 82.4185 bits (202), Expect = 2.734e-14
Identity = 59/234 (25.21%), Postives = 107/234 (45.73%), Query Frame = 0
Query:   19 KNLRMTGGAVARIDGVIVGTYVGEGTHAI---------LEELLQRVTRILALRCAQLSPKQRPLFFSEVTCNDIVNFHVGMDKEARVFVVAVEKSCPVRLSLLAVEEFAKEWGEGQHGNRSLVCVEDGCRFAVREHVMSLARRFEDMGAKDQLTRVQAGVEGVRELMQVNISKALEGLQATEDILVRSEELKSSALVFKKNATTLKKIMWWQKTRYQLLLGGLIILVAVVLGVV 243
            +N++  G A A  D  I+  Y      ++          +E+  +V R    +  Q++P  R      + C D   FH  M  +  VF V   KS P+RL+   ++   +E+   +   ++L C E G     +  V +LA +++D    D+++ V   V+ V+ +M  NI   L   +  E +  ++ +L   A VF+ +   L+K MWW+  +  + +G   ILV V++  V
Sbjct:  461 ENIKFIGIARA-TDKAIICCYFHSNKSSMNVDLAECTKWKEMYAKVLRAPTWK-TQVTPNAR----HSLDC-DPNKFHFSMSNDELVFAVITVKSYPIRLAFQLIQTLQQEFV-PKFATKALSCREHGLDKECKSMVQALATQYDDRTKVDKISEVLHQVDNVKSVMHTNIQVVLSNTEKMEVVEQKTNDLSEQAKVFRNSGRKLRKAMWWKNVKLTIAIGLCAILVIVIILAV 686          
BLAST of EWM29065.1 vs. NCBI_GenBank
Match: gi|635364143|emb|CCI47367.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 82.4185 bits (202), Expect = 2.817e-14
Identity = 59/234 (25.21%), Postives = 107/234 (45.73%), Query Frame = 0
Query:   19 KNLRMTGGAVARIDGVIVGTYVGEGTHAI---------LEELLQRVTRILALRCAQLSPKQRPLFFSEVTCNDIVNFHVGMDKEARVFVVAVEKSCPVRLSLLAVEEFAKEWGEGQHGNRSLVCVEDGCRFAVREHVMSLARRFEDMGAKDQLTRVQAGVEGVRELMQVNISKALEGLQATEDILVRSEELKSSALVFKKNATTLKKIMWWQKTRYQLLLGGLIILVAVVLGVV 243
            +N++  G A A  D  I+  Y      ++          +E+  +V R    +  Q++P  R      + C D   FH  M  +  VF V   KS P+RL+   ++   +E+   +   ++L C E G     +  V +LA +++D    D+++ V   V+ V+ +M  NI   L   +  E +  ++ +L   A VF+ +   L+K MWW+  +  + +G   ILV V++  V
Sbjct:  465 ENIKFIGIARA-TDKAIICCYFHSNKSSMNVDLAECTKWKEMYAKVLRAPTWK-TQVTPNAR----HSLDC-DPNKFHFSMSNDELVFAVITVKSYPIRLAFQLIQTLQQEFV-PKFATKALSCREHGLDKECKSMVQALATQYDDRTKVDKISEVLHQVDNVKSVMHTNIQVVLSNTEKMEVVEQKTNDLSEQAKVFRNSGRKLRKAMWWKNVKLTIAIGLCAILVIVIILAV 690          
BLAST of EWM29065.1 vs. NCBI_GenBank
Match: gi|325183073|emb|CCA17529.1| (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 80.4925 bits (197), Expect = 3.125e-14
Identity = 59/232 (25.43%), Postives = 105/232 (45.26%), Query Frame = 0
Query:   20 NLRMTGGAVARIDGVI--------VGTYVGEGTHAILEELLQRVTRILALRCAQLSPKQRPLFFSEVTCNDIVNFHVGMDKEARVFVVAVEKSCPVRLSLLAVEEFAKEWGEGQHGNRSLVCVEDGCRFAVREHVMSLARRFEDMGAKDQLTRVQAGVEGVRELMQVNISKALEGLQATEDILVRSEELKSSALVFKKNATTLKKIMWWQKTRYQLLLGGLIILVAVVLGVV 243
            N++  G A A    +I          T V     A  +E+  +V R    +  Q++P  R      + C D   FH  M  +  VF V   KS P+RL+   ++   +E+   +   ++L C E G     +  + +LA +++D    D+++ V   V+ V+ +M  NI   L   +  E +  ++ +L   A VF+ +   L+K MWW+  +  + +G   ILV V++  V
Sbjct:   42 NIKFIGVARATDKAIICCYFHSAKASTNVDLAECAKWKEMYAKVLRAPTWK-TQVTPNAR----HSLDC-DPNKFHFSMSNDELVFAVITVKSYPIRLAFQLIQTLQQEFV-PKFATKALNCREHGLDKECKSMMQTLANQYDDRTKVDKISEVLHQVDNVKSVMHTNIQVVLSNTEKMEVVEQKTNDLSEQAKVFRNSGRKLRKAMWWKNVKLTIAIGLCAILVIVIILAV 266          
The following BLAST results are available for this feature:
BLAST of EWM29065.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111584|gb|EWM29065.1|0.000e+0100.00Synaptobrevin [Nannochloropsis gaditana][more]
gi|953499896|emb|CEG38537.1|2.503e-1727.83vesicle-associated membrane protein 7b [Plasmopara... [more]
gi|566027736|gb|ETI50647.1|4.954e-1526.98hypothetical protein F443_05805 [Phytophthora para... [more]
gi|585109447|gb|EWM27266.1|5.644e-1531.51r-snare vamp72-family [Nannochloropsis gaditana][more]
gi|675188869|ref|XP_008903319.1|1.674e-1426.98hypothetical protein PPTG_10394 [Phytophthora para... [more]
gi|635364142|emb|CCI47366.1|2.289e-1425.21unnamed protein product [Albugo candida][more]
gi|635364145|emb|CCI47369.1|2.545e-1425.21unnamed protein product [Albugo candida][more]
gi|635364144|emb|CCI47368.1|2.734e-1425.21unnamed protein product [Albugo candida][more]
gi|635364143|emb|CCI47367.1|2.817e-1425.21unnamed protein product [Albugo candida][more]
gi|325183073|emb|CCA17529.1|3.125e-1425.43conserved hypothetical protein [Albugo laibachii N... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1610rna1610Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications