rna1607, rna1607 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1607
Unique Name	rna1607
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2825
Alignment location	CM002457.1:1046403..1048379 -

Link to JBrowse

Properties


Property Name	Value
Product	transcription factor iws1
Orig transcript id	gnl\|cribi\|Naga_100024g29.4328.mrna
Orig protein id	gnl\|cribi\|Naga_100024g29.4328
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002457.1	supercontig	CM002457.1:1046403..1048379 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100024g29	gene1544	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29070.1	cds1603	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1607	rna1607-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002457.1:1046403..1048379-
coding sequence from alignment at CM002457.1:1046403..1048379-

mRNA sequence

>rna1607 ID=rna1607|Name=rna1607|organism=Nannochloropsis gaditana|type=mRNA|length=2825bp
TGCGCAAAGGGTCGTTCATGGCCTTGGACCACAGCCATCCTGTGCTTTGA
TTTCTCCCGTCCCGTTGTCTTCTTGCACAAGCTCCTCTCAGCCCTGATTA
TTTTTTATTCACAGGGCACTTGCCCCGTTTGCCTTCAGGTTGCCTTGTTC
AGTGCGGTTGCAACGTGGGCAAGAGTATCGAAGGCCGAGGCCCTGCTTGT
CAGCGCCCCTTCCTCTTTGAGACAGTCTCTTTACGCATTCCGCGATAAGA
CGGTGTAGAGCGGACAATGATAGTTAACAGCGGCACAGGTGCTGATGGTC
GTAGTGGCGGCGGCATTGGCAGCGGCGGCAATGGGGAAGAACAACAAGCG
GCCTCGCTCAGTCACCCACGTCAAGGGTATCAAATGTCCAGCCCATCCGT
GTCTTCCACACCGCAAAGCCAGCCTCATTCCTATGGTCACGGAGCTGGAC
AGTCTTCACAGTCCTCGCACCACTACCAGCCGCATCAGCACCCCTCCGGT
CCTCAATACCCACCCACGCACAGGGGCGTGCTCTATTGTTCCACACGAGG
GGGGTGTCGGGATGTGACATTTGAGGAGGTCGTCATGGGCGGTCTGGCTC
CCGACAAAGGACTGTATGTGCCCCAGGAACTCCCTTACATACCTCCTGAA
CAGCTTGAAAAGCTTCGTGACGCTTCTTTCGTGGAATTGGCAAATTACAT
CATGCGCCTTGTCGTCGGGCCTGAGGACATCCCCCCGGAAAACTTGCGAG
TCTTGATCGAGTGCAGCACCAAAAATTTCCGGGTGCACGAAGTGGCCCCT
GTGCGGAAGGTGGGCCCCACTTGGGTGCTTGAGCTCTTCCACGGTCCCAC
ATTTGCGTTCAAGGACGTGGCATTGCAGTTCCTCGGCAATGTCTTCGAGT
ACTTCATGGCGAAGAAGAAAGGCGACCCGGACGTAAAGCTGACGGTCTTG
GGGGCCACATCGGGGGACACAGGATCGGCGGCGATCGAAGGCTTGAGGGG
TAAGAAGAATGTGAATGTCTTCGTGCTCTACCCCAAAGGAAGGGTGAGTG
AGGTCCAGGAACGTCAGATGACAACAGTCTTGGACAAGAACGTGCATTGC
ATCGCGGTTGAGAACGCCACCTTTGACGACTGCCAAAGCATCATCAAGTC
CGCTTTCCAGGATAAAGAGTTCCGCGAGAAAGTCTGTCTTGGGGCGGTCA
ATTCGATCAACTGGGCCCGGGTCCTGGCGCAGGTCACCTATTATTTCTTT
GCCTACTTCCGCGTTTTGGCTCAAAACGAGCGGGCCATGCGGAAAGAGCA
GCAGCAGCAACAACAACAGCAACGGGAAGGTAATGAGGGTGGGCGAGGAG
GCGTCTCGCCGGTGACAGAGAGCAAAGCGACGGGGAGCGGCGGGTCTGGG
AAGGACGGGGGTGCGTCGGATGGAGGTGAGGAGGGTGGCGCCCCCGCCAC
GAGCTCCGGTGGGATGCCCAACAGCGGGGGTGGAGGGAGGGAAGGGGGAA
GGGAGGGACATACTGGGAGTAAGCGGTCGAGGAGCCTCCCCAAGATGTCT
TTCTCCGTGCCGACGGGCAATTTCGGCGACGCCTTGGCTGGATACTACGC
CAAGGCCATGGGGCTTCCCATCGACAAAATTCTGATCGCCACCAACGAGA
ACGATATCTTGCACCGGTTCTTTTCCAACGGCAAGTACTGGCGGAGGGAG
GTGCACCCGACGTTGTCGCCCTCGATGGATATCGCCATCAGCAGCAATTT
TGAACGTCTCCTCTATCACTTGGCGGGGCGGGACCCGGACTTGCTGCGGG
AATGGATGGAGGAGTTCGAGCGCACCGGCCGACTCACCTTGCCCCCGCCC
ACCCTCGCCAAGGCACGCGAAGACTTCGTATCGTGCCGGGTGGACGAGCC
GGTTATGTTGGAGACCATGCTGTCTTTCCTCCGCGAGCACCATTACCTCC
TCTGCCCGCACAGTGCGGTGGGCGTCGCCGCGGCGAAGGGACTGGATATG
TTGGATGCGCACACCGTTTGTCTGGCCACAGCCCACCCGGGAAAATTCCT
GGACGCCACATTGAAGCACTTGCCAGTGGAGGTGGCAGAGGTGGAGGAGA
TCGAGGAAGATATGCCCACCCAATTGAGAGAGCTCGATCACCTCCCCACC
CGATCTGTAACCTTGCCGGCGAGCGCATTTTATGTGCAGAAATACATCCT
GCAAACCCTTGAAGGGAAGGACAACCAAGCCTTGTTGCGGTGGCTGGAGA
TGGCCGGCTTGATCTGGGGGTACGGAGACGGAAAACTCGGACGGAGAAGA
CGACGGTGGTCGATGGCGGTGGCGGTCGCGGTGCTTGGGACCGCGGTGGG
GGTCTGGGTGGGGGCGAGAAGGGCGGCCGCGGGCGGTGGGAGAGGAGTCC
TCTCCTAGGGAGGGTGGGTGTGGGAAGAGATAGGGAAGGCCTTGAGGCAT
GTATGAGTAGACAAGCAGGAGGCGTCCGGCAATCGTCGCATTTGACCATG
CGTAAGCGCGTGAGGGGCGGACGGGAGAGATGTTTTCGAGGGGGGACCAG
AGGTGGGATGTGGGGCGTGCAGGTCGTATTAGCCTCCCTGTCCTCATGTC
TGTGCTTTATGCAAATATTTGAAATCTTGGTGGCGACGGGAGGGCGGCGG
AGATAGGCCGGAGCGGACAGCATTGAGGTGGTGGAAGTAATTACGTGGTA
TTAGCACGAAGGCTGCGCCGTGGATCGTGGGGTCAGTCTGATGCGAGCCC
ACGCCTGTCATTCCACGGGCAATGCGAGTAATATGACTGCATACAAAAAA
TAAGCGAGTGGAGGACACGAAACAG

protein sequence of rna1607

>rna1607-protein ID=rna1607-protein|Name=rna1607|organism=Nannochloropsis gaditana|type=polypeptide|length=501bp
MAASRLDYQNLFGSSDEESDGDEGEQQQQSTSTAAPKASSGSSTIKPSAL
GKSSDDSSSDEDSSEEDEHLSAKKRLQQKGVPLASSSDEESDNEEEGDVP
RPAGKARTTGSEALRRATADFDDEEEEEEPRRPNVLPDLSSDGNSSSSGS
ESESSDDEGDSRRRKRGAEKRKHRLKTKGKRPSKGVDKGRDGRGKAGKQV
RDRGQGADEDGGAAAGTGAASEPRRAARELTAVEQALASFKRNRIQKLPD
AQVQEMTQHLITLMETAAKEDRQALLQHRPATQKLKRLTEVLDLLRSKHL
QGALVDNGQVLGLIRLWLQPLPDKSLPLYAVRTPMIDYLVTARVEVHRLK
ESGIGRVIQQLKKHPEETVENKAKLTEIVDNWSRLITGKGTTLKSRTSEE
EMEGRQGPAEREGGEGGFIMSTTSRGVVIPIRTGFNFKKVALTFREEFDR
GQGKEDEAMEVAEREPRDGSESRTNRVRKALKDMGRAGGKKLRHESVQHG
N

mRNA from alignment at CM002457.1:1046403..1048379-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1607 ID=rna1607|Name=rna1607|organism=Nannochloropsis gaditana|type=mRNA|length=1977bp|location=Sequence derived from alignment at CM002457.1:1046403..1048379- (Nannochloropsis gaditana)
ACCTCCTGCTATCGCTTTTTGAACAAATGATGATTGCATATCAGGCAACT
GCATGCGTGCATTAAAGCACAATCATAGGATAGTTATCCTTCCTACCTTT
ATCTTCCTAATTATTCTTAAATCTTTACTCTCGCGTCCGTACTCTGTCTT
GCCGCTCAGGTGGGCATATGCCAATACCTGATTATACCCGTATTAGCTCA
CTTTCCTCGTGCCTCTTGCTTCGGGTCATGTACTCGTACTCCTGTTTCTC
CTACCGAAGTACCAGATGTGGTTCACCGACATCACACTTTAAAAACTTCC
ATTTCTTTCTCCGCCTTGATCAGGGTGCTGCACAATGGCTGCCTCTCGAC
TAGACTATCAAAATCTTTTTGGAAGCTCAGACGAAGAAAGCGACGGCGAC
GAGGGTGAGCAACAACAGCAAAGTACTAGCACCGCCGCTCCTAAGGCATC
TTCCGGTTCCTCTACCATCAAGCCCTCGGCTCTTGGCAAAAGCAGCGACG
ACAGCAGCAGCGACGAAGACAGCAGTGAGGAGGACGAACATTTGTCGGCC
AAGAAAAGGTTACAACAAAAAGGAGTCCCGCTAGCATCCTCGTCCGACGA
GGAAAGTGACAATGAGGAAGAAGGTGACGTTCCTCGGCCCGCGGGTAAGG
CGCGGACCACGGGGTCTGAGGCGTTGAGGAGAGCGACGGCCGACTTCGAT
GACGAGGAAGAAGAAGAGGAGCCGCGTAGGCCCAATGTGCTCCCCGACCT
GAGCAGTGATGGGAACAGCAGCAGTAGTGGTAGCGAAAGCGAGTCCTCGG
ACGATGAGGGTGATTCAAGGCGGCGAAAACGAGGGGCGGAGAAAAGGAAG
CACCGACTGAAGACAAAGGGGAAACGCCCGAGCAAAGGGGTAGACAAAGG
GAGAGACGGGAGGGGGAAGGCAGGCAAACAAGTGAGAGACCGTGGGCAAG
GGGCCGATGAGGATGGAGGGGCTGCAGCCGGGACCGGGGCAGCCTCGGAG
CCCCGGCGGGCGGCGCGTGAGCTAACGGCAGTCGAGCAAGCCTTGGCGTC
TTTCAAGCGCAATCGGATCCAAAAGCTGCCGGACGCGCAGGTTCAAGAGA
TGACGCAACACCTCATTACCCTGATGGAAACGGCGGCGAAAGAGGACCGA
CAGGCTTTGCTACAGCACCGTCCGGCCACGCAAAAGTTGAAGCGGCTGAC
CGAGGTGCTGGACTTGCTCCGAAGCAAGCATCTACAAGGCGCCCTGGTCG
ACAACGGGCAAGTACTTGGCTTGATTCGACTCTGGTTGCAGCCCTTGCCC
GACAAGAGCCTTCCCCTTTACGCAGTCCGGACGCCGATGATCGATTACTT
GGTGACGGCGAGGGTTGAGGTGCATCGCTTGAAGGAGAGCGGGATTGGGA
GGGTGATCCAACAACTGAAAAAACACCCGGAAGAGACGGTGGAGAACAAG
GCTAAGTTGACGGAAATCGTGGACAATTGGTCCCGGCTGATCACAGGGAA
AGGGACGACGTTGAAGAGCCGAACCAGCGAGGAGGAGATGGAGGGTCGGC
AGGGACCGGCGGAGCGGGAGGGGGGAGAGGGGGGCTTCATCATGTCCACC
ACCTCGAGGGGGGTCGTGATCCCCATCCGGACGGGCTTCAATTTCAAAAA
GGTCGCGTTGACCTTCCGGGAGGAGTTTGACCGGGGGCAAGGGAAGGAGG
ACGAGGCCATGGAGGTGGCGGAGAGGGAGCCTCGAGACGGATCCGAGAGT
CGTACAAATCGGGTTAGGAAGGCGTTGAAGGACATGGGGAGGGCGGGAGG
GAAGAAGCTGCGGCATGAAAGTGTGCAGCATGGTAATTAGAGGAGAGCGA
GGGCGGGGGGGAATGCAGTGACGCGTCGCTGGAGGGGTGTACTGGGCAGA
GAGGGAACAAAGAAGGTGGAATGGACCGCCATGGTCCGGAGAAAGAAACG
TCGAAAACACCGTTAAGAAACCCTTGG

Coding sequence (CDS) from alignment at CM002457.1:1046403..1048379-

>rna1607 ID=rna1607|Name=rna1607|organism=Nannochloropsis gaditana|type=CDS|length=1506bp|location=Sequence derived from alignment at CM002457.1:1046403..1048379- (Nannochloropsis gaditana)
ATGGCTGCCTCTCGACTAGACTATCAAAATCTTTTTGGAAGCTCAGACGA
AGAAAGCGACGGCGACGAGGGTGAGCAACAACAGCAAAGTACTAGCACCG
CCGCTCCTAAGGCATCTTCCGGTTCCTCTACCATCAAGCCCTCGGCTCTT
GGCAAAAGCAGCGACGACAGCAGCAGCGACGAAGACAGCAGTGAGGAGGA
CGAACATTTGTCGGCCAAGAAAAGGTTACAACAAAAAGGAGTCCCGCTAG
CATCCTCGTCCGACGAGGAAAGTGACAATGAGGAAGAAGGTGACGTTCCT
CGGCCCGCGGGTAAGGCGCGGACCACGGGGTCTGAGGCGTTGAGGAGAGC
GACGGCCGACTTCGATGACGAGGAAGAAGAAGAGGAGCCGCGTAGGCCCA
ATGTGCTCCCCGACCTGAGCAGTGATGGGAACAGCAGCAGTAGTGGTAGC
GAAAGCGAGTCCTCGGACGATGAGGGTGATTCAAGGCGGCGAAAACGAGG
GGCGGAGAAAAGGAAGCACCGACTGAAGACAAAGGGGAAACGCCCGAGCA
AAGGGGTAGACAAAGGGAGAGACGGGAGGGGGAAGGCAGGCAAACAAGTG
AGAGACCGTGGGCAAGGGGCCGATGAGGATGGAGGGGCTGCAGCCGGGAC
CGGGGCAGCCTCGGAGCCCCGGCGGGCGGCGCGTGAGCTAACGGCAGTCG
AGCAAGCCTTGGCGTCTTTCAAGCGCAATCGGATCCAAAAGCTGCCGGAC
GCGCAGGTTCAAGAGATGACGCAACACCTCATTACCCTGATGGAAACGGC
GGCGAAAGAGGACCGACAGGCTTTGCTACAGCACCGTCCGGCCACGCAAA
AGTTGAAGCGGCTGACCGAGGTGCTGGACTTGCTCCGAAGCAAGCATCTA
CAAGGCGCCCTGGTCGACAACGGGCAAGTACTTGGCTTGATTCGACTCTG
GTTGCAGCCCTTGCCCGACAAGAGCCTTCCCCTTTACGCAGTCCGGACGC
CGATGATCGATTACTTGGTGACGGCGAGGGTTGAGGTGCATCGCTTGAAG
GAGAGCGGGATTGGGAGGGTGATCCAACAACTGAAAAAACACCCGGAAGA
GACGGTGGAGAACAAGGCTAAGTTGACGGAAATCGTGGACAATTGGTCCC
GGCTGATCACAGGGAAAGGGACGACGTTGAAGAGCCGAACCAGCGAGGAG
GAGATGGAGGGTCGGCAGGGACCGGCGGAGCGGGAGGGGGGAGAGGGGGG
CTTCATCATGTCCACCACCTCGAGGGGGGTCGTGATCCCCATCCGGACGG
GCTTCAATTTCAAAAAGGTCGCGTTGACCTTCCGGGAGGAGTTTGACCGG
GGGCAAGGGAAGGAGGACGAGGCCATGGAGGTGGCGGAGAGGGAGCCTCG
AGACGGATCCGAGAGTCGTACAAATCGGGTTAGGAAGGCGTTGAAGGACA
TGGGGAGGGCGGGAGGGAAGAAGCTGCGGCATGAAAGTGTGCAGCATGGT
AATTAG

Synonyms

Publications