EWM29070.1, cds1603 (CDS) Nannochloropsis gaditana

Overview
NameEWM29070.1
Unique Namecds1603
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:1046540..1048045 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM29070.1
Producttranscription factor iws1
Orig transcript idgnl|cribi|Naga_100024g29.4328.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:1046540..1048045 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
GO:0006351transcription, DNA-templated
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR017923TFIIS_N
Homology
BLAST of EWM29070.1 vs. NCBI_GenBank
Match: gi|585111589|gb|EWM29070.1| (transcription factor iws1 [Nannochloropsis gaditana])

HSP 1 Score: 1001.5 bits (2588), Expect = 0.000e+0
Identity = 501/501 (100.00%), Postives = 501/501 (100.00%), Query Frame = 0
Query:    1 MAASRLDYQNLFGSSDEESDGDEGEQQQQSTSTAAPKASSGSSTIKPSALGKSSDDSSSDEDSSEEDEHLSAKKRLQQKGVPLASSSDEESDNEEEGDVPRPAGKARTTGSEALRRATADFDDEEEEEEPRRPNVLPDLSSDGNSSSSGSESESSDDEGDSRRRKRGAEKRKHRLKTKGKRPSKGVDKGRDGRGKAGKQVRDRGQGADEDGGAAAGTGAASEPRRAARELTAVEQALASFKRNRIQKLPDAQVQEMTQHLITLMETAAKEDRQALLQHRPATQKLKRLTEVLDLLRSKHLQGALVDNGQVLGLIRLWLQPLPDKSLPLYAVRTPMIDYLVTARVEVHRLKESGIGRVIQQLKKHPEETVENKAKLTEIVDNWSRLITGKGTTLKSRTSEEEMEGRQGPAEREGGEGGFIMSTTSRGVVIPIRTGFNFKKVALTFREEFDRGQGKEDEAMEVAEREPRDGSESRTNRVRKALKDMGRAGGKKLRHESVQHGN 501
            MAASRLDYQNLFGSSDEESDGDEGEQQQQSTSTAAPKASSGSSTIKPSALGKSSDDSSSDEDSSEEDEHLSAKKRLQQKGVPLASSSDEESDNEEEGDVPRPAGKARTTGSEALRRATADFDDEEEEEEPRRPNVLPDLSSDGNSSSSGSESESSDDEGDSRRRKRGAEKRKHRLKTKGKRPSKGVDKGRDGRGKAGKQVRDRGQGADEDGGAAAGTGAASEPRRAARELTAVEQALASFKRNRIQKLPDAQVQEMTQHLITLMETAAKEDRQALLQHRPATQKLKRLTEVLDLLRSKHLQGALVDNGQVLGLIRLWLQPLPDKSLPLYAVRTPMIDYLVTARVEVHRLKESGIGRVIQQLKKHPEETVENKAKLTEIVDNWSRLITGKGTTLKSRTSEEEMEGRQGPAEREGGEGGFIMSTTSRGVVIPIRTGFNFKKVALTFREEFDRGQGKEDEAMEVAEREPRDGSESRTNRVRKALKDMGRAGGKKLRHESVQHGN
Sbjct:    1 MAASRLDYQNLFGSSDEESDGDEGEQQQQSTSTAAPKASSGSSTIKPSALGKSSDDSSSDEDSSEEDEHLSAKKRLQQKGVPLASSSDEESDNEEEGDVPRPAGKARTTGSEALRRATADFDDEEEEEEPRRPNVLPDLSSDGNSSSSGSESESSDDEGDSRRRKRGAEKRKHRLKTKGKRPSKGVDKGRDGRGKAGKQVRDRGQGADEDGGAAAGTGAASEPRRAARELTAVEQALASFKRNRIQKLPDAQVQEMTQHLITLMETAAKEDRQALLQHRPATQKLKRLTEVLDLLRSKHLQGALVDNGQVLGLIRLWLQPLPDKSLPLYAVRTPMIDYLVTARVEVHRLKESGIGRVIQQLKKHPEETVENKAKLTEIVDNWSRLITGKGTTLKSRTSEEEMEGRQGPAEREGGEGGFIMSTTSRGVVIPIRTGFNFKKVALTFREEFDRGQGKEDEAMEVAEREPRDGSESRTNRVRKALKDMGRAGGKKLRHESVQHGN 501          
BLAST of EWM29070.1 vs. NCBI_GenBank
Match: gi|553194892|ref|XP_005856048.1| (iws1 family protein, partial [Nannochloropsis gaditana CCMP526] >gi|422293013|gb|EKU20314.1| iws1 family protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 752.281 bits (1941), Expect = 0.000e+0
Identity = 378/378 (100.00%), Postives = 378/378 (100.00%), Query Frame = 0
Query:    1 MAASRLDYQNLFGSSDEESDGDEGEQQQQSTSTAAPKASSGSSTIKPSALGKSSDDSSSDEDSSEEDEHLSAKKRLQQKGVPLASSSDEESDNEEEGDVPRPAGKARTTGSEALRRATADFDDEEEEEEPRRPNVLPDLSSDGNSSSSGSESESSDDEGDSRRRKRGAEKRKHRLKTKGKRPSKGVDKGRDGRGKAGKQVRDRGQGADEDGGAAAGTGAASEPRRAARELTAVEQALASFKRNRIQKLPDAQVQEMTQHLITLMETAAKEDRQALLQHRPATQKLKRLTEVLDLLRSKHLQGALVDNGQVLGLIRLWLQPLPDKSLPLYAVRTPMIDYLVTARVEVHRLKESGIGRVIQQLKKHPEETVENKAKLTEI 378
            MAASRLDYQNLFGSSDEESDGDEGEQQQQSTSTAAPKASSGSSTIKPSALGKSSDDSSSDEDSSEEDEHLSAKKRLQQKGVPLASSSDEESDNEEEGDVPRPAGKARTTGSEALRRATADFDDEEEEEEPRRPNVLPDLSSDGNSSSSGSESESSDDEGDSRRRKRGAEKRKHRLKTKGKRPSKGVDKGRDGRGKAGKQVRDRGQGADEDGGAAAGTGAASEPRRAARELTAVEQALASFKRNRIQKLPDAQVQEMTQHLITLMETAAKEDRQALLQHRPATQKLKRLTEVLDLLRSKHLQGALVDNGQVLGLIRLWLQPLPDKSLPLYAVRTPMIDYLVTARVEVHRLKESGIGRVIQQLKKHPEETVENKAKLTEI
Sbjct:    6 MAASRLDYQNLFGSSDEESDGDEGEQQQQSTSTAAPKASSGSSTIKPSALGKSSDDSSSDEDSSEEDEHLSAKKRLQQKGVPLASSSDEESDNEEEGDVPRPAGKARTTGSEALRRATADFDDEEEEEEPRRPNVLPDLSSDGNSSSSGSESESSDDEGDSRRRKRGAEKRKHRLKTKGKRPSKGVDKGRDGRGKAGKQVRDRGQGADEDGGAAAGTGAASEPRRAARELTAVEQALASFKRNRIQKLPDAQVQEMTQHLITLMETAAKEDRQALLQHRPATQKLKRLTEVLDLLRSKHLQGALVDNGQVLGLIRLWLQPLPDKSLPLYAVRTPMIDYLVTARVEVHRLKESGIGRVIQQLKKHPEETVENKAKLTEI 383          
BLAST of EWM29070.1 vs. NCBI_GenBank
Match: gi|669149960|ref|XP_008610542.1| (hypothetical protein SDRG_06539 [Saprolegnia diclina VS20] >gi|530737538|gb|EQC35780.1| hypothetical protein SDRG_06539 [Saprolegnia diclina VS20])

HSP 1 Score: 121.709 bits (304), Expect = 1.791e-26
Identity = 67/188 (35.64%), Postives = 103/188 (54.79%), Query Frame = 0
Query:  223 PRRAARELTAVEQALASFKRNRIQK---LPDAQVQEMTQHLITLMETAAKEDRQALLQHRPATQKLKRLTEVLDLLRSKHLQGALVDNGQVLGLIRLWLQPLPDKSLPLYAVRTPMIDYLVTARVEVHRLKESGIGRVIQQLKKHPEETVENKAKLTEIVDNWSRLITGKGTTLKSRTSEEEMEGRQG 407
            P R  REL   ++ +   K  R +    L    ++ +TQ L+  M+ A  +D QA+ +HRPA +KLK +   L ++R   LQ  L+D   +LG+I+ W+QPL + +LP  ++R+ M+D      +    LK SG G+V+  L KHP+ET ENK     ++D WSR +  K T   S+  E E E R+ 
Sbjct:  143 PERQQRELDFFDETMKGLKSGRAKSKMSLSQQDMENITQELLYRMDKACSDDMQAMDEHRPALEKLKFVDNALTMMRKVQLQPMLLD-FDLLGIIKKWIQPLENGALPSLSLRSKMLDMCQRMPIYKEHLKRSGFGKVVMSLWKHPDETPENKELCRLMIDRWSRSVFSK-TLDYSKLGEYEAEKREA 328          
BLAST of EWM29070.1 vs. NCBI_GenBank
Match: gi|813178940|ref|XP_012205939.1| (hypothetical protein SPRG_11599 [Saprolegnia parasitica CBS 223.65] >gi|641529096|gb|KDO23285.1| hypothetical protein SPRG_11599 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 119.013 bits (297), Expect = 1.411e-25
Identity = 67/188 (35.64%), Postives = 103/188 (54.79%), Query Frame = 0
Query:  223 PRRAARELTAVEQALASFKRNRIQK---LPDAQVQEMTQHLITLMETAAKEDRQALLQHRPATQKLKRLTEVLDLLRSKHLQGALVDNGQVLGLIRLWLQPLPDKSLPLYAVRTPMIDYLVTARVEVHRLKESGIGRVIQQLKKHPEETVENKAKLTEIVDNWSRLITGKGTTLKSRTSEEEMEGRQG 407
            P R  REL   ++ +   K  R +    L    ++ +TQ L+  M+ A  +D QA+ +HRPA +KLK +   L ++R   LQ  L+D   +LG+I+ W+QPL + +LP  ++R+ M+D      +    LK SG G+V+  L KHP+ET ENK     ++D WSR +  K T   S+  E E E R+ 
Sbjct:  143 PERQQRELDFFDETMKGLKSGRAKSKMSLSQQDMENITQELLYRMDKAYSDDVQAIDEHRPALEKLKFVDNALTMMRKVQLQPMLLD-FDLLGIIKKWIQPLDNGALPSLSLRSKMLDMCQRMPIYKEHLKRSGFGKVVMSLWKHPDETPENKELCRLMIDRWSRSVFSK-TLDYSKLGEYEAEKREA 328          
BLAST of EWM29070.1 vs. NCBI_GenBank
Match: gi|170577715|ref|XP_001894111.1| (IWS1 C-terminus family protein [Brugia malayi] >gi|671417280|emb|CDQ04693.1| Bm3332, isoform c [Brugia malayi])

HSP 1 Score: 115.546 bits (288), Expect = 4.931e-24
Identity = 61/145 (42.07%), Postives = 89/145 (61.38%), Query Frame = 0
Query:  260 LITLMETAAKEDRQALLQHRPATQKLKRLTEVLDLLRSKHLQGALVDNGQVLGLIRLWLQPLPDKSLPLYAVRTPMIDYLV-TARVEVHRLKESGIGRVIQQLKKHPEETVENKAKLTEIVDNWSRLITGKGTTLKSRTSEEEME 403
            LI  M++AAK+DR + ++ RPA QK K L  V  +L    L  A++DNG ++ +I  WL PLPDKSLP   +RT ++  L   +R+E   LK+SG+GR +  L KHP ET ENKA    ++ +W+R I    T  +S T +E ++
Sbjct:  267 LIDAMKSAAKDDRHSNIERRPALQKRKMLPHVKAMLIKHDLMEAIIDNG-MMNVISEWLAPLPDKSLPALEIRTDLLKILQDFSRLEPGTLKQSGLGRAVMLLYKHPRETKENKALAARLISDWARPIFQLDTDFRSMTKDERIQ 410          
BLAST of EWM29070.1 vs. NCBI_GenBank
Match: gi|734552486|gb|KHN79969.1| (IWS1-like protein [Toxocara canis])

HSP 1 Score: 111.309 bits (277), Expect = 1.129e-22
Identity = 61/150 (40.67%), Postives = 88/150 (58.67%), Query Frame = 0
Query:  255 EMTQHLITLMETAAKEDRQALLQHRPATQKLKRLTEVLDLLRSKHLQGALVDNGQVLGLIRLWLQPLPDKSLPLYAVRTPMIDYLV-TARVEVHRLKESGIGRVIQQLKKHPEETVENKAKLTEIVDNWSRLITGKGTTLKSRTSEEEME 403
            E  + L   M+ AAK+DR + ++ +PA QK K L  V  +L    L  A++DNG +L  +  WL PLPDKSLP   +RT ++  L   +R+E   LK+SG+GR +  L KHP+ET ENKA    ++  W+R I    T  +S + EE M+
Sbjct:  221 EQIRMLTDAMKAAAKDDRHSNMERKPALQKRKMLRYVKAMLIKHDLMEAIIDNG-MLSAVSEWLAPLPDKSLPALEIRTDLLKILQDYSRLEQGTLKQSGLGRAVMLLYKHPKETKENKALAHSLISEWARPIFQLDTDFRSMSREERMQ 369          
BLAST of EWM29070.1 vs. NCBI_GenBank
Match: gi|732869698|gb|KHJ87823.1| (IWS1 protein, partial [Oesophagostomum dentatum])

HSP 1 Score: 110.538 bits (275), Expect = 2.102e-22
Identity = 63/150 (42.00%), Postives = 91/150 (60.67%), Query Frame = 0
Query:  256 MTQHLITLMETAAKEDRQALLQHRPATQKLKRLTEV-LDLLRSKHLQGALVDNGQVLGLIRLWLQPLPDKSLPLYAVRTPMIDYLV-TARVEVHRLKESGIGRVIQQLKKHPEETVENKAKLTEIVDNWSRLITGKGTTLKSRTSEEEME 403
               H++T M+ AAKEDR +  + +PA +K K L EV + LLR + L+ A++D G V+  +  WL PLPDKSLP   +RT ++  L    R++   LK+SG+GR +  L KHP ET ENKA   +I+  WSR I    T  +S + EE ++
Sbjct:  243 FIAHMVTAMKNAAKEDRHSNTERKPALKKRKMLAEVKIMLLRVEMLE-AMIDGG-VMSAVSEWLAPLPDKSLPALEIRTELLKILQGFGRLDQGILKQSGLGRAVMLLYKHPRETKENKAMAAQIIREWSRPIFQLDTDFRSVSREERVQ 390          
BLAST of EWM29070.1 vs. NCBI_GenBank
Match: gi|597848817|gb|EYB98307.1| (hypothetical protein Y032_0132g1708 [Ancylostoma ceylanicum])

HSP 1 Score: 110.153 bits (274), Expect = 4.279e-22
Identity = 60/147 (40.82%), Postives = 91/147 (61.90%), Query Frame = 0
Query:  259 HLITLMETAAKEDRQALLQHRPATQKLKRLTEV-LDLLRSKHLQGALVDNGQVLGLIRLWLQPLPDKSLPLYAVRTPMIDYLV-TARVEVHRLKESGIGRVIQQLKKHPEETVENKAKLTEIVDNWSRLITGKGTTLKSRTSEEEME 403
            H+++ M+TAAK+DR +  + +PA +K K L++V + LLR   L+ A++D G ++  +  WL PLPDKSLP   +RT ++  L    R++   LK+SG+GR +  L KHP ET ENKA    I+  WSR I    T  +S + EE ++
Sbjct:  313 HMVSAMKTAAKDDRHSNTERKPALKKRKMLSDVKMMLLRMDMLE-AMIDGG-MMSAVSEWLAPLPDKSLPALEIRTELLKILQGFGRLDQGVLKQSGLGRAVMLLYKHPRETKENKAMAAHIIREWSRPIFQLDTDFRSVSREERVQ 457          
BLAST of EWM29070.1 vs. NCBI_GenBank
Match: gi|919103818|ref|XP_013388241.1| (PREDICTED: protein IWS1 homolog [Lingula anatina])

HSP 1 Score: 110.153 bits (274), Expect = 8.194e-22
Identity = 58/142 (40.85%), Postives = 81/142 (57.04%), Query Frame = 0
Query:  260 LITLMETAAKEDRQALLQHRPATQKLKRLTEVLDLLRSKHLQGALVDNGQVLGLIRLWLQPLPDKSLPLYAVRTPMIDYLV-TARVEVHRLKESGIGRVIQQLKKHPEETVENKAKLTEIVDNWSRLITGKGTTLKSRTSEE 400
            LI  M+TAA+EDR    Q +PA +KL+ L EVL  LR   LQGA +D G +L  +  WL PLPDKSLP   +R  ++  L     +    LK SG+G+ +  L KHP E  EN  +  ++++ WSR I    +  K+ + EE
Sbjct:  609 LINQMKTAAEEDRALNNQSKPAIKKLRMLPEVLQQLRKSDLQGAFLDCG-ILPALTEWLAPLPDKSLPHLQIREGLLRILQGFPPISSEALKSSGLGKAVMYLYKHPREIRENHERAGKLINEWSRPIFNLTSNYKNLSKEE 749          
BLAST of EWM29070.1 vs. NCBI_GenBank
Match: gi|1126219782|ref|XP_019644054.1| (PREDICTED: protein IWS1 homolog A-like [Branchiostoma belcheri])

HSP 1 Score: 109.383 bits (272), Expect = 9.611e-22
Identity = 60/142 (42.25%), Postives = 81/142 (57.04%), Query Frame = 0
Query:  260 LITLMETAAKEDRQALLQHRPATQKLKRLTEVLDLLRSKHLQGALVDNGQVLGLIRLWLQPLPDKSLPLYAVRTPMIDYLVT-ARVEVHRLKESGIGRVIQQLKKHPEETVENKAKLTEIVDNWSRLITGKGTTLKSRTSEE 400
            LI  M+ A  EDR      +PA +KLK L+ V+  LR K LQ A++D G +L +I  WL PLPD+SLP   +R  M+  L          LK SGIGR +  L KHP+ET  NK +  ++++ WSR I G  +  KS + EE
Sbjct:  346 LINKMKAAVDEDRVLNQNRQPAVRKLKMLSSVMQTLRKKDLQEAILDCG-MLPVITDWLSPLPDRSLPHLHIREEMLKILQDFPPCSQESLKSSGIGRAVMYLYKHPKETRNNKERAGKLINEWSRPIFGLNSNFKSMSREE 486          
The following BLAST results are available for this feature:
BLAST of EWM29070.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111589|gb|EWM29070.1|0.000e+0100.00transcription factor iws1 [Nannochloropsis gaditan... [more]
gi|553194892|ref|XP_005856048.1|0.000e+0100.00iws1 family protein, partial [Nannochloropsis gadi... [more]
gi|669149960|ref|XP_008610542.1|1.791e-2635.64hypothetical protein SDRG_06539 [Saprolegnia dicli... [more]
gi|813178940|ref|XP_012205939.1|1.411e-2535.64hypothetical protein SPRG_11599 [Saprolegnia paras... [more]
gi|170577715|ref|XP_001894111.1|4.931e-2442.07IWS1 C-terminus family protein [Brugia malayi] >gi... [more]
gi|734552486|gb|KHN79969.1|1.129e-2240.67IWS1-like protein [Toxocara canis][more]
gi|732869698|gb|KHJ87823.1|2.102e-2242.00IWS1 protein, partial [Oesophagostomum dentatum][more]
gi|597848817|gb|EYB98307.1|4.279e-2240.82hypothetical protein Y032_0132g1708 [Ancylostoma c... [more]
gi|919103818|ref|XP_013388241.1|8.194e-2240.85PREDICTED: protein IWS1 homolog [Lingula anatina][more]
gi|1126219782|ref|XP_019644054.1|9.611e-2242.25PREDICTED: protein IWS1 homolog A-like [Branchiost... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1607rna1607Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications