rna1602, rna1602 (mRNA) Nannochloropsis gaditana

Overview
Namerna1602
Unique Namerna1602
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1744
Alignment locationCM002457.1:1036959..1038694 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100024g35.4318.mrna
Orig protein idgnl|cribi|Naga_100024g35.4318
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:1036959..1038694 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100024g35gene1539Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1602rna1602-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29060.1cds1598Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1602 ID=rna1602|Name=rna1602|organism=Nannochloropsis gaditana|type=mRNA|length=1744bp
CATCCAGCACAGGCAATGAATGGCTCGACGCAGGATGTACTGTTGCTTCC
CAAAAAAGGGATTGCTTCAACGCAGTCAGCCTGTAAGACATCGTCCAGAA
CACCTTTGCAATCGTCTTCATCGGCTTCTGCGACACATTTCAAGCTCATG
GCTTTGGTTATTTTGGTCATACAGAACTCTGCACTCGCACTAACCATGCG
ACTTTCACGGACATCAGCTAAGAAAAGCGCCGACCCGATGTATCTAGCGA
GTACAGCTGTCGTCCTTTCTGAAGTAATCAAGCTTGTTGTGTCAACATGT
CTTGTGGTCCGTGCTGAGTACGGCTGGACCAATGCCAAACAAAGACTATA
TCAGGAAATGATCGGTCGTCCAGAGGATATGGGCAAGCTACTGGTGCCTT
CACTGCTGTACGTCATTCAAAACAATCTTGGATATGTGGCAATGTCAAAT
TTGGACGCGGCTACCTTCCAAGTTCTGTACCAGCTCAAGATCTTGACTAC
CGCACTCTTTTCTGTTTTCCTTCTCGGTCGACATCTGGCCCTGAGGCAAT
GGCTCGCCTTGCTGTTACTTATCTGCGGAGTCTCCATCGTCCAACTTGCG
AAGCAGCGAGGATCGGATCGAGAGCATACTTCAACGGAAGACCCATCCGA
TATGAATTATCCATCTAGCGAGACCAACAATCCCACGCTTGGCTTGATTT
GCATCCTTCTTGCTTGTATCTCGAGTGGCTTTGCCGGGGTGTACTTCGAA
AAAGTTCTCAAGTCATCCAAGGACGTGTCTGTCTGGGTTCGCAACGTGCA
ACTTGCCTTGATAGGAATCATGGTCGGCCTCGTCGCCGTCTGCTACACCG
ACGCTGCGGCTGTGCGGGCTGATGGCTTTTTCCAAGGGTACTCACTGCTT
GTCTGGACAGTAGTAGGACTTCAGGCGCTGGGTGGTATCATGGTAGCGCT
CGTTGTCAAGTACGCAGACAGTGTCCTTAAAGGCTTTGCTACCTCAGTTT
CGATTGTTGTGTCGTTTGTGCTGTCTTTGCTGCTTTTTCAGGATGCGGCT
GTGTCATTCCTCTTTTTGGCGGGAACGACCCTTGTCATTTCATCTACGAT
ATTGTACAGCATCAAAGGTAGCACCCCCAAGGCCGCCATCTATACCAGTG
CCGCTCCGAACAGCGGCGTGCTGGGAGTGGCGGTGACTTCCTCGCGGGCC
CCACCATCGAAGTCTTCTTTGATGGAGTCAGGAGCTGCAATGGGCGACAA
CGTATCTTGCGAGCTCGCCTCGCTTTCAGCTCCTCAAACCTTTGCCTCTC
ACGTCCATCAAACTTCTCATGACACATGGAGCGGTAGACATGCCAGTATG
GAATCTGACGCCTCTACCTCCCTGGTACAACCCACGCTCCCAACCTCCTC
CGCTTCATCCTCCTCGCCGACGAAGCGTCGGTCCGGAGTAACACTGGTCA
CGGTTTGAATGCCAAGGTACGTGTTTGATATGTTGAAGGTGGTGCGAACG
TGATTTCATGTCGACATTATGTGTCCAACGGCGTACCAGCCAGTAGAGGG
AAAGCATCTTAAATTGGGATGCGAAATTTTATAGACTGAAAGTGTAGAAA
AAAAAAGTAATGCCCAAATAACCAAAATTGGTCCGGATCATCGATTTCAA
GGCTACTTTGTGTTAATCCCGATTTTTCCTTGTTAGTTCATGGAAACTTC
ATCACATCTGCGACGTTTGTAACCCCTTCCTCCACACACTAGCT
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protein sequence of rna1602

>rna1602-protein ID=rna1602-protein|Name=rna1602|organism=Nannochloropsis gaditana|type=polypeptide|length=316bp
MYYGGMAILFLFLLPLVSAFSPPLSTARPRISTITKAVALPASDQSTLNK
SPIVIFPAQFGVAKDYEEMIAELNSRGHPAYAVDLSRFDWLKITKSAITQ
DYWRGTLKPSGTLDFYFDAAAAIIERVKFEYPDRKIHLVAHSIGGWVARA
YCGEVADPEDVNKRFISLTTLGSPNYPPPAGEGIWGSIDQTRGLLEYVNL
RFPGAFHKGMKYVSVGGVGTKGRFGGGLEESIAYISYLPLCGKGDAEGDG
IIPESVAFLEGSTHVRVMEAKHSGFIPTAGPSIKIPGYVWYGTPEIVDQW
LVHLPESKKVGLRGWN
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mRNA from alignment at CM002457.1:1036959..1038694-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1602 ID=rna1602|Name=rna1602|organism=Nannochloropsis gaditana|type=mRNA|length=1736bp|location=Sequence derived from alignment at CM002457.1:1036959..1038694- (Nannochloropsis gaditana)
TTGCTCGCTTAATCCCTCGTCCTCCGTATCAATGTTTACTTCCTCTTCTT
CTTCAACCTCGATATCGTCCTCCGAGGACAGTAGCCGTCGCGGGGGCCTC
AAACTTCGCATTGTTCTTCAAGCTGATCGCTTTGACAAGACCCCGGCTCG
GTCATCAAATGACCAATATCATAGCGCTACCGACTAGTGCCTCTCCAAAG
CGCATCCATCAGCATTCTTGGTGCCCTAACCCGGAACTCCTGTGCGGGTA
CGTGCGTATAGGGCCTGGTTGAGCTATTTCACGGGCTTGGCGAACACGCC
CTCCTTGAGCGATGACGTTCATGACGCCACTCCCCTGTCCAAGCCCGTTG
ACATGCACTGGCCTCTTTGTCAGACTGCGTACTCATTGCGTGTATCCCCA
CTTTTAACATACACATGCACAGGAGAGCTTGCCAAAAGAGTAAGAAAGAC
CGTTGAACGGTACCGTGGATCATGTATTATGGTGGTATGGCCATACTATT
TTTGTTCCTTCTCCCACTGGTTTCCGCCTTCAGCCCTCCCCTCAGCACGG
CAAGACCTCGAATCAGCACGATCACGAAGGCGGTAGCTTTACCCGCTTCG
GATCAGTCCACTTTGAACAAAAGCCCCATTGTTATCTTCCCGGCACAATT
TGGCGTCGCAAAAGATTACGAGGAAATGATTGCGGAGCTAAATTCGCGAG
GTCATCCGGCGTATGCGGTAGATCTCTCCCGTTTTGATTGGCTCAAAATA
ACCAAGTCTGCCATTACGCAAGGTACAGAATCTAACTTCAAAGACTGTTT
GAAAACATGTAGACAGATACCCCATGCATTTTGAACGCAGAGGCTCACAA
GCAGGGCAACATGCGGGGGGGACACGATCCTGCTTACTTTGTTTGAGGTG
CTCCACCCTATGTCAGCCTTCACATGAAATTTACCCATCTGATTTATTGT
AATACTTACATTTTCATCCTCTATTGATTGATTTTTTAAAGACTACTGGA
GAGGCACGCTGAAACCCTCGGGAACTTTGGATTTTTATTTCGATGCCGCC
GCAGCCATAATCGAGCGCGTGAAGTTCGAATATCCCGATCGCAAAATTCA
CCTTGTGGCTCATTCCATCGGAGGCTGGGTTGCAAGGGCATACTGCGGCG
AGGTAGCTGACCCAGAGGACGTCAACAAGCGATTCATCTCCCTTACCACG
CTCGGCTCTCCGAATTACCCTCCTCCCGCCGGGGAAGGCATCTGGGGTTC
GATCGATCAGACACGCGGATTGCTAGAGTATGTGAATCTAAGATTTCCCG
GAGCCTTTCACAAGGGAATGAAATACGTATCGGTTGGAGGGGTAGGAACC
AAGGGTAGGTTTGGTGGGGGCCTCGAAGAGAGCATCGCGTACATAAGTTA
TCTACCTTTGTGTGGTAAAGGGGATGCTGAGGGTGATGGTATTATACCCG
AATCGGTGGCATTTTTGGAGGGCTCCACGCACGTCCGTGTGATGGAGGCG
AAGCACTCTGGATTTATCCCGACGGCAGGCCCGAGCATCAAAATTCCGGG
GTACGTCTGGTATGGAACGCCGGAGATCGTGGATCAGTGGTTGGTGCATT
TACCGGAATCAAAAAAGGTCGGGCTCAGGGGGTGGAATTGAGAATCGCAG
CATGCGACAGTGTAGAATCGGAACATGTGATGGTGTAAGTGCATGTGAAA
ATGTGATGTCGATTTGCTCGAGGCCCTACTGACGAT
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Coding sequence (CDS) from alignment at CM002457.1:1036959..1038694-

>rna1602 ID=rna1602|Name=rna1602|organism=Nannochloropsis gaditana|type=CDS|length=1902bp|location=Sequence derived from alignment at CM002457.1:1036959..1038694- (Nannochloropsis gaditana)
ACTACTGGAGAGGCACGCTGAAACCCTCGGGAACTTTGGATTTTTATTTC
GATGCCGCCGCAGCCATAATCGAGCGCGTGAAGTTCGAATATCCCGATCG
CAAAATTCACCTTGTGGCTCATTCCATCGGAGGCTGGGTTGCAAGGGCAT
ACTGCGGCGAGGTAGCTGACCCAGAGGACGTCAACAAGCGATTCATCTCC
CTTACCACGCTCGGCTCTCCGAATTACCCTCCTCCCGCCGGGGAAGGCAT
CTGGGGTTCGATCGATCAGACACGCGGATTGCTAGAGTATGTGAATCTAA
GATTTCCCGGAGCCTTTCACAAGGGAATGAAATACGTATCGGTTGGAGGG
GTAGGAACCAAGGGTAGGTTTGGTGGGGGCCTCGAAGAGAGCATCGCGTA
CATAAGTTATCTACCTTTGTGTGGTAAAGGGGATGCTGAGGGTGATGGTA
TTATACCCGAATCGGTGGCATTTTTGGAGGGCTCCACGCACGTCCGTGTG
ATGGAGGCGAAGCACTCTGGATTTATCCCGACGGCAGGCCCGAGCATCAA
AATTCCGGGGTACGTCTGGTATGGAACGCCGGAGATCGTGGATCAGTGGT
TGGTGCATTTACCGGAATCAAAAAAGGTCGGGCTCAGGGGGTGGAATTGA
ATGTATTATGGTGGTATGGCCATACTATTTTTGTTCCTTCTCCCACTGGT
TTCCGCCTTCAGCCCTCCCCTCAGCACGGCAAGACCTCGAATCAGCACGA
TCACGAAGGCGGTAGCTTTACCCGCTTCGGATCAGTCCACTTTGAACAAA
AGCCCCATTGTTATCTTCCCGGCACAATTTGGCGTCGCAAAAGATTACGA
GGAAATGATTGCGGAGCTAAATTCGCGAGGTCATCCGGCGTATGCGGTAG
ATCTCTCCCGTTTTGATTGGCTCAAAATAACCAAGTCTGCCATTACGCAA
GACTACTGGAGAGGCACGCTGAAACCCTCGGGAACTTTGGATTTTTATTT
CGATGCCGCCGCAGCCATAATCGAGCGCGTGAAGTTCGAATATCCCGATC
GCAAAATTCACCTTGTGGCTCATTCCATCGGAGGCTGGGTTGCAAGGGCA
TACTGCGGCGAGGTAGCTGACCCAGAGGACGTCAACAAGCGATTCATCTC
CCTTACCACGCTCGGCTCTCCGAATTACCCTCCTCCCGCCGGGGAAGGCA
TCTGGGGTTCGATCGATCAGACACGCGGATTGCTAGAGTATGTGAATCTA
AGATTTCCCGGAGCCTTTCACAAGGGAATGAAATACGTATCGGTTGGAGG
GGTAGGAACCAAGGGTAGGTTTGGTGGGGGCCTCGAAGAGAGCATCGCGT
ACATAAGTTATCTACCTTTGTGTGGTAAAGGGGATGCTGAGGGTGATGGT
ATTATACCCGAATCGGTGGCATTTTTGGAGGGCTCCACGCACGTCCGTGT
GATGGAGGCGAAGCACTCTGGATTTATCCCGACGGCAGGCCCGAGCATCA
AAATTCCGGGGTACGTCTGGTATGGAACGCCGGAGATCGTGGATCAGTGG
TTGGTGCATTTACCGGAATCAAAAAAGGTCGGGCTCAGGGGGTGGAATTG
AATGTATTATGGTGGTATGGCCATACTATTTTTGTTCCTTCTCCCACTGG
TTTCCGCCTTCAGCCCTCCCCTCAGCACGGCAAGACCTCGAATCAGCACG
ATCACGAAGGCGGTAGCTTTACCCGCTTCGGATCAGTCCACTTTGAACAA
AAGCCCCATTGTTATCTTCCCGGCACAATTTGGCGTCGCAAAAGATTACG
AGGAAATGATTGCGGAGCTAAATTCGCGAGGTCATCCGGCGTATGCGGTA
GATCTCTCCCGTTTTGATTGGCTCAAAATAACCAAGTCTGCCATTACGCA
AG
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Synonyms
Publications