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Properties
| Property Name | Value |
|---|
| Product | succinate dehydrogenase flavoprotein subunit |
| Orig transcript id | gnl|cribi|Naga_100024g37.4327.mrna |
| Orig protein id | gnl|cribi|Naga_100024g37.4327 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 3; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002457.1 | supercontig | CM002457.1:1031111..1034487 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna1598 ID=rna1598|Name=rna1598|organism=Nannochloropsis gaditana|type=mRNA|length=3972bp
CCGAAATCACCCGTAAGATAGCTCTTCAAATGTCAAAAGTAATTTGATAC
GTTCCGCCATTAAGCCCGAAGGTGGCGGGGTGCGTTACCACCACCTACTC
GCGTAAGAGTGGAGGAGGAAATGGGGGACGTTACCACGGACAAGAAGACC
TTCCGCCTTTTTACGAAAAACAACCTACAGCAAGAATATATCTGCCCACT
TTATCTGGATACTGGGCGTCATACATCTATGTAAGTGGTTTTCAATGTGT
GGCAAGAGCTGACACTCGGTCTGCCGAATCCCCTCCGCCTTCCCAGTCGG
CAGGTTATCTCTGTCTACGCGTCCCTAGTAGTATTGCTTGTAAATCAGTC
TGGACGATCATCGGTCCATCAAACCCGTTAAGCCATCATTTATACTATCT
ACGAACATCCAGACTCGACACGGCGTTTGTAATATCGCATTACAAGCGTG
AGGGGGTGGATACGAAGACGCTACCAGCAATCGACGTAGGTGTACCCGAA
GCTGCCTCCGAATCAGAGAAGCAGCACTACGTTGGCTTTTGTAAATATTT
AAGCCACGGGCTTCAAGGAAAGAGCTTGCCAAAATATGCCGAGATACGCC
TGCCTCAGAGCCGGAATCTGTGTGTATGGCTTTGCCCACCTTCGGATTCC
TCAGCTTTCGAAGCAACAGATAAGCTAAAGCTTTTAATCCCACCCGTCCT
CTTGAGTTCGTTCACATTCTCGCCGCCATCTTCCCCCCTACCTTCACCTG
TCTCCTCTGGGAATGCAAACTCTATTGTAGAGGAAGGTGGCTCTCTCGAC
ACGCTCCACCACGCTGGTGCTGCGACAGATGATAACACCACCGGAATGCA
GAAGCGTGTACCGGTACGACAACATTTCGAGGGTGCAGAGTTGGAAAGCG
ACGAGACACCCAGGACTTCTGGGGAACCTCTTTCACTACCTGCGGCGGTT
GGGACTCGAGCACGGATTCCTCCGCCTGTTGCCCCTTCTTACGTAAGTCA
TCCCTCGTCATCTCCTCCACGCCCGGTGGATCCCTCGATGCCCGCCTCCA
CATTTATGGCGATCGACAATTCTTATTTGAGCACCCTCAGCCAAAATCAT
GTCTGGTTGTTTGGAGCGCTGGCAGAGTTGCTGCATAATTCCCTGGACGC
AGGGAGCACGCGCTTGCATATCGACGTCCGCGAGGAAGACGGAGGGGAAG
GCGGGGTCATGGTCCTCGAGATCAAGGACAACGGCGTGGGGATGGGCCCC
GATGAGATGGAGGGGATGTTTCGATTGGGTAAAACGTATGCTCGAGACCG
GAAAAACGTGGAAAGGGTGGGCCGATACGGCTGCGGTTTCAAGCAGGGAA
GCCTTCGGATCGGTTCCACGGCCGTTGTGCTGAGCAAAAGCCTGAGGCAT
AAGTCATTGGTCATGGGCATCCTGTCAAACGAGCCCCACCTTCGGGACGA
GAACGCGGCACCCGTGTGTCGTGTGGTTACATTGAGCCCCGACACCATGG
AGCCTGACCCGCTGTACACGTCCCGCCAGGCCTTCCGAGAGGCCTCCGAG
CTGATAGCTCGCTACAGCTTCGTCACTCCAGAGCGGCATTGGTCTCTGTT
GCTCAACGCCTGGGCGGCGGGAGAGTCGGGCACCGTGGTCTACATCCAAG
GCATGGAACGAGGGGATCCGGAGGGCGGTGGCGTTTGGCGTGAGCTGCGA
GTGGACAGGGCGGAAGGCGATCTACAGCTGGTGACGCGTACGGGGAAAAA
ACATCTCAACACCCGCGGTGCCCTCCTTGCTCATGACGTGCCTATTGACT
ATTCCCTTCGAGCGTACCTCCAAGTAGCCTTTCTGCAACACCGCATGAGA
ATCACCTTGTTGGGAAAAGACGTTCCGACGCCAGACCTCCTCGAGACCTT
GCTGCACGTACGGCGTTACAACCTGCTCCAAGACGAGCCAACCCGAAAAC
CCGTCATAGCCTCCGTAGGTTTCTCATCCGAGGCGAAGCGATTGGGCTTG
GGCGGGGCCATGTTTTTTTGCACCAACGTTCTGATCGCGTCCTACGTGCG
ACAGGAGATCGGGATTACAAATCCGCGGGAGGGGATGGGTGTGCTCGCCG
TCGTGCATTTAGATCCCCGCCACTACGAAACCCAGCATTCCAAGCAATCC
TTCCGTCGCCCCAACCCGGCCCTCGAGAAAATTGAAGAGCGGCTCGGACG
TGTCTGGACTCAGTATATTTCCCAAGAGCTTGCGCGCGAGGCAAGGATAG
GGAAGAGCAAAGCGGTAGAAATACCGTCCAGGGCCAAGTTAAAAGTGACG
GATTTCATACAGTGCGAACACTGCGGCAAGTGGCGAATGGTGACACAGTC
GTACGTAATGCAATTCGCAGGGAAGGATACCAAATGGTACTGTTGGTCGC
AAGGATCACCAGTGACGAGCTGCGAGGCCCCCGAGGCAGCGATCTCTCAA
GAGGGGGAGGAAGTGATGGTGGATTTCAAAACGGGTAGTCAGGCCGAATA
TTTGACAGCCATCGTTGACGGCGGAGAAATGTCTTACGCAGACAAGATGC
CAGGGAAGCGAAAGCATGGGCCTGCAAGCAACAAATGTGGATCACAGGGT
AAGGGGCAAAGCGTGGAAGATAGTAGGGAGAGAGAACGAAAGTCGAAGGG
AGAGAAATCCCGGACGAAAAAGAAGCATCACGGCCTGGACTTGGACCAGA
AGGTAGAGGGCGTGCAAAAAAAGCGGCGCAAGAAATGCCATCGCGATGAC
TACAGCGACGGAAAAGACGGCGCAGGTCGCAAACCTCGCTTTCTTATCTC
GGGAAACGACACCACCTTGCTGAAACCCCTGTCACTTCCTCATCTAAATT
TGGTCAAACTTTCAGACGGACGAAAGGTTGTCTTGAAGAACGTTGCTGTG
TCTCCTGTGCCCGAAGCCCGCTCAGCCTTTCGAGAGGAATTGAAAAAGTT
GCGGCGGCTAAATCATGAAAACCTCGTGCCGGTAGTGGCGGCCCGCATCG
AGGAGGGAAAGGCCTTGTCGGCGGTGGGTTTCGCTTTTGAAGAAGCGCTT
GTAGATCTTGATCACGTCCTCCTGAAGCCACACTCGCTAGTTACGCTGGA
GGACCGATTACTGACCGCGTGCAAGATCGCGGCCGGATTGGACTACTTGC
ACGCTCACGGGCTGGTTCATGGTGCATTGCGTCCAGCAAACATCCTAGTC
TCTTTCCCGATGCCGATGCTGCAGGTGGTCAAGCTGACGGACCAAGGTAT
TGCCCATCGTGGGTTATCCAAAGGTGTGCCGAATAGATGCGGGAGCGCGG
ACAGGATTACCTTCACTGCTCCTGAGAGATTGAGTATTTGGTCGTCGTCA
ATGGCCACGGCTGAAGCAAGAAGTCGATCCCAATCCAAGACGCTGCCACC
CCTTGTGTTGCATCCATCGGGTGACATATGGAGCATGGGCGTTCTGCTCC
TCGAGTTGATGGTGGGACGCAAAGCGTGGGGCGCAGCGAGGGATCCGAAG
GAGCTTCGTCGGCTAGTGGCTGACTTTTCGATAGCCGAATTTTCCGGGTG
GCGCATATTCGAGAATTTCAAGTCGCGGCTACCGGCAGACTCGGGATGGG
AAGAGCGTCTTAATGGAATCAAACAAATTTTGCAGGCGTGTTTGAGGAGG
AAAGCCTCTGAACGCTTAGGATCACACCAGCTGGTAAACAAGCTCGCAGT
TCTGAGCGCGGACATCTTGTATCGCCCGGCGCGAGGTCCTTGAAGGCATG
GTAGATGTGGCATCCAAGCTTGAAATGTTGAAAACTAAACAAGAAGTAAT
TAAACAGGAAAAGCTTTTATATTTGACAATGAGGAAATGTATAGAGTTGG
TAACAAAGCGTACATTTGGCATGGGGAGAGATCCAGACGAAGCGTACTCG
TCGGTCCCGGTGTAAGCTACACATGTAATGCAGCCATGTTCACTTTAATG
CATTTAATTATAACACACGTGT back to topprotein sequence of rna1598 >rna1598-protein ID=rna1598-protein|Name=rna1598|organism=Nannochloropsis gaditana|type=polypeptide|length=457bp
MGAAEAGFKTACVTKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTV
KGSDWLGDQDAIHYMCREAPRAVYELESYGLPFSRTEDGKIYQRAFGGQS
LKYGKGGQAYRCACAADRTGHAMLHTLYGRSLAFNTTYFIEYFALDLIMD
GDGRCVGITALNMEDGTLHRIHANNTVLATGGYGRAYFSCTSAHTCTGDG
NAMVLRAGLPVEDPEFVQFHPTGIYGAGCLITEGCRGEGGILRNAEGERF
MERYAPTAKDLASRDVVSRAMTMEIREGRGVGKEKDHLFLHLDHLPPDLL
AERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHFGEVIAPKK
KADGSLDPDHVIPGLFAAGEAACASVHGANRLGANSLLDIVVFGRATALR
IADIAKPGDKVPPMPADAGQRSVEDLDKVRFASGSTNTATIRKKMQKTMQ
EHAAVYR back to topmRNA from alignment at CM002457.1:1031111..1034487+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna1598 ID=rna1598|Name=rna1598|organism=Nannochloropsis gaditana|type=mRNA|length=3377bp|location=Sequence derived from alignment at CM002457.1:1031111..1034487+ (Nannochloropsis gaditana)
aggactgAGGTGGCGGCTGATTCGTGTGCTTGCGTCTGGTAAAGCATGGA
CGGACGACCACGTCAGGATGGGCGTGGTGCATGCGCATGGATCTGTGTCA
TTTTTCACCCGAGGACGTGATGCCTGGGATGTTTAGCAGGAAGAGTGCGA
CGACCGCAAAAGAAGAGGCTGGAACAAGCGCCTTCAAGCTCAGAGCACCT
CAACCTCTTTCAGCCTCAATGCTCGCACTTGCTTCGTGAACCTGGGGAGT
GCGTTCCCATAGTACCTCATTATGTCAGGACTTATTTTTGAGCGTAGCCT
TGAGATTGTTTGTGAATATTGCAAGATTCCAACGTCCTTTTGTACATCAA
TCCTTTGATTCTCTTACGCCACCAGCTCTTCAGGAAAAAACTTCAAAACC
ACCCAGTACAACACTTCCATACATTTTTGGACGTTCTTCCATGCTGCGCA
GCGTAGGCAAGCGTCTTTTGGGCAGTGTGGCGCAGGTCCAGCGGGTACGT
GACGTACATGTACAGGCTTGGCAAAGTGATTCACTCCTCCGGCGTATTCC
CCGCCGGAACACCTTCCGTTCCACCACTCCCGTGGTTTCTGGATTGAAGG
AAGCTTGTATGGGCCTTGTGGTCTTTGAAACTTACCCCTGTATTTCTTGT
GCATCGCCCGTGGCTATCATCCCTCTGGTGGTGTATGGAGAAGGATTGAG
ACTGCGAGCTCCGTTTCCAGGCCCGTCCAGCCCGCCGGAGATGTGTTCAG
GGGAGCGTAAAACATGTATTATATCATGATAACCTTTGCattgttttttt
cttccccacgTTTCGCATTGCCAGCGCGCTATTCATGCCTCCTCAGCCCG
CCTGGCCGCCATTTCGGGCGTTCCCCCCGAGGGGAAGGTCTCCTCTACCC
CAAACGCCAAGTACACTGTGATCGATCACGAGTacgacgtggtggtggtt
ggTGCCGGTGGGGCGGGACTTAGGGCGGCCATGGGAGCTGCAGAGGCCGG
CTTCAAGACCGCGTGTGTGACCAagctcttccccacccgTTCTCACACCG
TGGCGGCTCAGGGCGGCATCAACGCGGCTTTGGGAAACATGACCGAGGAC
GACTGGCGCTGGCACATGTACGACACGGTGAAAGGCTCGGACTGGCTGGG
GGACCAGGACGCGATCCACTACATGTGTCGAGAAGCGCCTCGGGCCGTGT
ACGAGCTGGAGAGTTACGGGCTGCCCTTCTCACGCACTGAGGACGGGAAG
ATCTACCAGCGGGCCTTCGGCGGCCAGTCCCTCAAATACGGAAAGGGCGG
GCAAGCCTACCGCTGTGCCTGTGCCGCGGATCGAACGGGTCACGCCATGT
TGCACACCCTCTACGGGCGCTCTCTTGCCTTCAACACCACATATTTCATC
GAGTATTTTGCCCTGGATTTGATCATGGATGGGGACGGGCGTTGCGTCGG
GATCACCGCCTTGAacatggaggacgggacctTGCACCGGATCCACGCCA
ACAACACCGTCCTGGCAACGGGCGGATACGGCCGTGCCTATTTTTCTTGC
ACGTCGGCCCACACCTGCACAGGGGACGGCAATGCCATGGTGCTTCGGGC
GGGTCTGCCCGTGGAGGACCCGGAGTTTGTTCAGTTCCACCCCACGGGCA
TCTACGGTGCGGGATGCCTCATCACAGAGGGCTgccgtggggagggagga
atcctGAGGAACGCAGAGGGGGAGCGATTCATGGAGCGGTATGCGCCCAC
GGCCAAGGACCTGGCGTCGCGGGATGTGGTGTCGCGCGCCATGACGATGG
AGATccgggaggggcgaggcgtaggcaaggagaaggatcaCTTGTTTTTA
CACCTGGACCACCTGCCCCCCGATCTCCTCGCGGAGCGCTTGCCGGGGAT
CTCGGAGACAGCGGCGATCTTTGCCGGCGTGGACGTGACCAAGGAGCCCA
TCCCGGTCCTGCCCACGGTCCACTACAACATGGGCGGCATTCCCACCAAC
CACTTTGGGGAAGTTATCGCtcccaagaagaaggcggacgGTTCCCTGGA
CCCGGACCACGTTATTCCAGGACTCTTTGCGGCCGGAGAAGCCGCGTGTG
CGTCCGTGCACGGCGCGAATCGACTGGGCGCCAATTCCCTCCTGGACATC
GTCGTCTTCGGACGGGCCACGGCCTTGCGAATTGCGGACATCGCCAAGCC
CGGAGACAAGGTTCCTCCCATGCCGGCCGACGCAGGTCAACGCTCGGTGG
AGGACTTGGACAAGGTCCGGTTTGCCAGTGGAAGCACCAACACAGCGACG
ATCAGGAAGAAGATGCAGAAGACTATGCAGGAGCACGCGGCTGTGTACCG
GTAAGCACGTAAagtaggaaggaggagttcAAAACGATAACGTATTCAAT
GAGAGAATCTTGCTTTGAATATTTATCAAAGAAGTGATGGCCCAGCCGTG
GCGCGTCAGGTTGTACGCGACCGAACCGACGAGTACCTTCCTGGTGGGAA
CACACTCTCTCATTCTTATTGTAGGCACGAGCCGTGAAAGCCTTTCTTTC
AATGAAAACTCACTACACACAACTTTCCCTCacatttcccccttcgcccg
cgACAGGACGCAAGATAGTCTTGCGGAGGGCAAGGTGAAGATCGACGAGG
TTCTGTCCACCTGGCAGGATTTGAAGGTGACCGACCGATCCCTCATGTGG
AACACGGACTTGATTGAATCTCTTGAATTAAGGTAAAAGTGATGTcgaag
gacaagagggagagggggaaggtgtAGGAGGCGCCTTAGAGCGGCATGGG
GATTCGAAGACTTTTCCGGCTCATTTTCCCTACCAACTTTCCATCTTCTC
AGAAACCTTCTGTCGAATGCGGCGACCACCATGTATGCCGCCGAAGCTCG
TAAGGAGAGTCGAGGCGCACATGCCCGTGAGGACTTTTCGGAGCGGGATG
ACGCGAACTGGATGATGCACACGATAGCAGATTTTGACTACGACACGCAT
AAGACGACGATTTCTTACCGACCCGTCCACAAGCACACCTTGGACGAGAA
CGAGGTGAAACCTGTGCCGCCCTTTAAGCGAGTATATTAAAAACCCTTTT
TTCGAACATGAATAGGAGACGCAGAAGCGGCATACCTGATGTCATATAAC
TGATGAGGATTGGCAGGCAAGGGCCTACGAAGGGGCGTTGGatggggcag
ggggagagtCAAATTTTGAATGAAGATTATGGCTCTCAAATATACGTAAA
CCAATCACAGTCAGCTAGtgtgtggaggaaggggttaCAAACGTCGCAGA
TGTGATGAAGTTTCCATGAACTAACAAGGAAAAATCGGGATTAACACAAA
GTAGCCTTGAAATCGATGATCCGGACC back to topCoding sequence (CDS) from alignment at CM002457.1:1031111..1034487+ >rna1598 ID=rna1598|Name=rna1598|organism=Nannochloropsis gaditana|type=CDS|length=1374bp|location=Sequence derived from alignment at CM002457.1:1031111..1034487+ (Nannochloropsis gaditana)
ATGGGAGCTGCAGAGGCCGGCTTCAAGACCGCGTGTGTGACCAagctctt
ccccacccgTTCTCACACCGTGGCGGCTCAGGGCGGCATCAACGCGGCTT
TGGGAAACATGACCGAGGACGACTGGCGCTGGCACATGTACGACACGGTG
AAAGGCTCGGACTGGCTGGGGGACCAGGACGCGATCCACTACATGTGTCG
AGAAGCGCCTCGGGCCGTGTACGAGCTGGAGAGTTACGGGCTGCCCTTCT
CACGCACTGAGGACGGGAAGATCTACCAGCGGGCCTTCGGCGGCCAGTCC
CTCAAATACGGAAAGGGCGGGCAAGCCTACCGCTGTGCCTGTGCCGCGGA
TCGAACGGGTCACGCCATGTTGCACACCCTCTACGGGCGCTCTCTTGCCT
TCAACACCACATATTTCATCGAGTATTTTGCCCTGGATTTGATCATGGAT
GGGGACGGGCGTTGCGTCGGGATCACCGCCTTGAacatggaggacgggac
ctTGCACCGGATCCACGCCAACAACACCGTCCTGGCAACGGGCGGATACG
GCCGTGCCTATTTTTCTTGCACGTCGGCCCACACCTGCACAGGGGACGGC
AATGCCATGGTGCTTCGGGCGGGTCTGCCCGTGGAGGACCCGGAGTTTGT
TCAGTTCCACCCCACGGGCATCTACGGTGCGGGATGCCTCATCACAGAGG
GCTgccgtggggagggaggaatcctGAGGAACGCAGAGGGGGAGCGATTC
ATGGAGCGGTATGCGCCCACGGCCAAGGACCTGGCGTCGCGGGATGTGGT
GTCGCGCGCCATGACGATGGAGATccgggaggggcgaggcgtaggcaagg
agaaggatcaCTTGTTTTTACACCTGGACCACCTGCCCCCCGATCTCCTC
GCGGAGCGCTTGCCGGGGATCTCGGAGACAGCGGCGATCTTTGCCGGCGT
GGACGTGACCAAGGAGCCCATCCCGGTCCTGCCCACGGTCCACTACAACA
TGGGCGGCATTCCCACCAACCACTTTGGGGAAGTTATCGCtcccaagaag
aaggcggacgGTTCCCTGGACCCGGACCACGTTATTCCAGGACTCTTTGC
GGCCGGAGAAGCCGCGTGTGCGTCCGTGCACGGCGCGAATCGACTGGGCG
CCAATTCCCTCCTGGACATCGTCGTCTTCGGACGGGCCACGGCCTTGCGA
ATTGCGGACATCGCCAAGCCCGGAGACAAGGTTCCTCCCATGCCGGCCGA
CGCAGGTCAACGCTCGGTGGAGGACTTGGACAAGGTCCGGTTTGCCAGTG
GAAGCACCAACACAGCGACGATCAGGAAGAAGATGCAGAAGACTATGCAG
GAGCACGCGGCTGTGTACCGGTAA back to top
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