EWM29069.1, cds1594 (CDS) Nannochloropsis gaditana

Overview
NameEWM29069.1
Unique Namecds1594
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:1032091..1033464 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29069.1
Productsuccinate dehydrogenase flavoprotein subunit
Orig transcript idgnl|cribi|Naga_100024g37.4327.mrna
GbkeyCDS
Noteencoded by transcript variant 3; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:1032091..1033464 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0005739mitochondrion
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0000166nucleotide binding
GO:0016491oxidoreductase activity
GO:0016627oxidoreductase activity, acting on the CH-CH group of donors
GO:0050660flavin adenine dinucleotide binding
Vocabulary: Biological Process
TermDefinition
GO:0006091generation of precursor metabolites and energy
GO:0006099tricarboxylic acid cycle
GO:0022900electron transport chain
GO:0055114oxidation-reduction process
Vocabulary: INTERPRO
TermDefinition
IPR003952FRD_SDH_FAD_BS
IPR011281Succ_DH_flav_su_fwd
IPR003953FAD_bind_dom
IPR015939Fum_Rdtase/Succ_DH_flav-like_C
IPR027477Succ_DH/fumarate_Rdtase_cat
IPR014006Succ_Dhase_FrdA_Gneg
Homology
BLAST of EWM29069.1 vs. NCBI_GenBank
Match: gi|585111586|gb|EWM29067.1| (succinate dehydrogenase flavoprotein subunit [Nannochloropsis gaditana])

HSP 1 Score: 954.125 bits (2465), Expect = 0.000e+0
Identity = 457/457 (100.00%), Postives = 457/457 (100.00%), Query Frame = 0
Query:    1 MGAAEAGFKTACVTKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIHYMCREAPRAVYELESYGLPFSRTEDGKIYQRAFGGQSLKYGKGGQAYRCACAADRTGHAMLHTLYGRSLAFNTTYFIEYFALDLIMDGDGRCVGITALNMEDGTLHRIHANNTVLATGGYGRAYFSCTSAHTCTGDGNAMVLRAGLPVEDPEFVQFHPTGIYGAGCLITEGCRGEGGILRNAEGERFMERYAPTAKDLASRDVVSRAMTMEIREGRGVGKEKDHLFLHLDHLPPDLLAERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHFGEVIAPKKKADGSLDPDHVIPGLFAAGEAACASVHGANRLGANSLLDIVVFGRATALRIADIAKPGDKVPPMPADAGQRSVEDLDKVRFASGSTNTATIRKKMQKTMQEHAAVYR 457
            MGAAEAGFKTACVTKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIHYMCREAPRAVYELESYGLPFSRTEDGKIYQRAFGGQSLKYGKGGQAYRCACAADRTGHAMLHTLYGRSLAFNTTYFIEYFALDLIMDGDGRCVGITALNMEDGTLHRIHANNTVLATGGYGRAYFSCTSAHTCTGDGNAMVLRAGLPVEDPEFVQFHPTGIYGAGCLITEGCRGEGGILRNAEGERFMERYAPTAKDLASRDVVSRAMTMEIREGRGVGKEKDHLFLHLDHLPPDLLAERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHFGEVIAPKKKADGSLDPDHVIPGLFAAGEAACASVHGANRLGANSLLDIVVFGRATALRIADIAKPGDKVPPMPADAGQRSVEDLDKVRFASGSTNTATIRKKMQKTMQEHAAVYR
Sbjct:   71 MGAAEAGFKTACVTKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIHYMCREAPRAVYELESYGLPFSRTEDGKIYQRAFGGQSLKYGKGGQAYRCACAADRTGHAMLHTLYGRSLAFNTTYFIEYFALDLIMDGDGRCVGITALNMEDGTLHRIHANNTVLATGGYGRAYFSCTSAHTCTGDGNAMVLRAGLPVEDPEFVQFHPTGIYGAGCLITEGCRGEGGILRNAEGERFMERYAPTAKDLASRDVVSRAMTMEIREGRGVGKEKDHLFLHLDHLPPDLLAERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHFGEVIAPKKKADGSLDPDHVIPGLFAAGEAACASVHGANRLGANSLLDIVVFGRATALRIADIAKPGDKVPPMPADAGQRSVEDLDKVRFASGSTNTATIRKKMQKTMQEHAAVYR 527          
BLAST of EWM29069.1 vs. NCBI_GenBank
Match: gi|585111587|gb|EWM29068.1| (succinate dehydrogenase flavoprotein subunit [Nannochloropsis gaditana])

HSP 1 Score: 951.044 bits (2457), Expect = 0.000e+0
Identity = 457/457 (100.00%), Postives = 457/457 (100.00%), Query Frame = 0
Query:    1 MGAAEAGFKTACVTKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIHYMCREAPRAVYELESYGLPFSRTEDGKIYQRAFGGQSLKYGKGGQAYRCACAADRTGHAMLHTLYGRSLAFNTTYFIEYFALDLIMDGDGRCVGITALNMEDGTLHRIHANNTVLATGGYGRAYFSCTSAHTCTGDGNAMVLRAGLPVEDPEFVQFHPTGIYGAGCLITEGCRGEGGILRNAEGERFMERYAPTAKDLASRDVVSRAMTMEIREGRGVGKEKDHLFLHLDHLPPDLLAERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHFGEVIAPKKKADGSLDPDHVIPGLFAAGEAACASVHGANRLGANSLLDIVVFGRATALRIADIAKPGDKVPPMPADAGQRSVEDLDKVRFASGSTNTATIRKKMQKTMQEHAAVYR 457
            MGAAEAGFKTACVTKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIHYMCREAPRAVYELESYGLPFSRTEDGKIYQRAFGGQSLKYGKGGQAYRCACAADRTGHAMLHTLYGRSLAFNTTYFIEYFALDLIMDGDGRCVGITALNMEDGTLHRIHANNTVLATGGYGRAYFSCTSAHTCTGDGNAMVLRAGLPVEDPEFVQFHPTGIYGAGCLITEGCRGEGGILRNAEGERFMERYAPTAKDLASRDVVSRAMTMEIREGRGVGKEKDHLFLHLDHLPPDLLAERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHFGEVIAPKKKADGSLDPDHVIPGLFAAGEAACASVHGANRLGANSLLDIVVFGRATALRIADIAKPGDKVPPMPADAGQRSVEDLDKVRFASGSTNTATIRKKMQKTMQEHAAVYR
Sbjct:    1 MGAAEAGFKTACVTKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIHYMCREAPRAVYELESYGLPFSRTEDGKIYQRAFGGQSLKYGKGGQAYRCACAADRTGHAMLHTLYGRSLAFNTTYFIEYFALDLIMDGDGRCVGITALNMEDGTLHRIHANNTVLATGGYGRAYFSCTSAHTCTGDGNAMVLRAGLPVEDPEFVQFHPTGIYGAGCLITEGCRGEGGILRNAEGERFMERYAPTAKDLASRDVVSRAMTMEIREGRGVGKEKDHLFLHLDHLPPDLLAERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHFGEVIAPKKKADGSLDPDHVIPGLFAAGEAACASVHGANRLGANSLLDIVVFGRATALRIADIAKPGDKVPPMPADAGQRSVEDLDKVRFASGSTNTATIRKKMQKTMQEHAAVYR 457          
BLAST of EWM29069.1 vs. NCBI_GenBank
Match: gi|585111588|gb|EWM29069.1| (succinate dehydrogenase flavoprotein subunit [Nannochloropsis gaditana])

HSP 1 Score: 947.192 bits (2447), Expect = 0.000e+0
Identity = 457/457 (100.00%), Postives = 457/457 (100.00%), Query Frame = 0
Query:    1 MGAAEAGFKTACVTKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIHYMCREAPRAVYELESYGLPFSRTEDGKIYQRAFGGQSLKYGKGGQAYRCACAADRTGHAMLHTLYGRSLAFNTTYFIEYFALDLIMDGDGRCVGITALNMEDGTLHRIHANNTVLATGGYGRAYFSCTSAHTCTGDGNAMVLRAGLPVEDPEFVQFHPTGIYGAGCLITEGCRGEGGILRNAEGERFMERYAPTAKDLASRDVVSRAMTMEIREGRGVGKEKDHLFLHLDHLPPDLLAERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHFGEVIAPKKKADGSLDPDHVIPGLFAAGEAACASVHGANRLGANSLLDIVVFGRATALRIADIAKPGDKVPPMPADAGQRSVEDLDKVRFASGSTNTATIRKKMQKTMQEHAAVYR 457
            MGAAEAGFKTACVTKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIHYMCREAPRAVYELESYGLPFSRTEDGKIYQRAFGGQSLKYGKGGQAYRCACAADRTGHAMLHTLYGRSLAFNTTYFIEYFALDLIMDGDGRCVGITALNMEDGTLHRIHANNTVLATGGYGRAYFSCTSAHTCTGDGNAMVLRAGLPVEDPEFVQFHPTGIYGAGCLITEGCRGEGGILRNAEGERFMERYAPTAKDLASRDVVSRAMTMEIREGRGVGKEKDHLFLHLDHLPPDLLAERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHFGEVIAPKKKADGSLDPDHVIPGLFAAGEAACASVHGANRLGANSLLDIVVFGRATALRIADIAKPGDKVPPMPADAGQRSVEDLDKVRFASGSTNTATIRKKMQKTMQEHAAVYR
Sbjct:    1 MGAAEAGFKTACVTKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIHYMCREAPRAVYELESYGLPFSRTEDGKIYQRAFGGQSLKYGKGGQAYRCACAADRTGHAMLHTLYGRSLAFNTTYFIEYFALDLIMDGDGRCVGITALNMEDGTLHRIHANNTVLATGGYGRAYFSCTSAHTCTGDGNAMVLRAGLPVEDPEFVQFHPTGIYGAGCLITEGCRGEGGILRNAEGERFMERYAPTAKDLASRDVVSRAMTMEIREGRGVGKEKDHLFLHLDHLPPDLLAERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHFGEVIAPKKKADGSLDPDHVIPGLFAAGEAACASVHGANRLGANSLLDIVVFGRATALRIADIAKPGDKVPPMPADAGQRSVEDLDKVRFASGSTNTATIRKKMQKTMQEHAAVYR 457          
BLAST of EWM29069.1 vs. NCBI_GenBank
Match: gi|676390327|ref|XP_009038442.1| (hypothetical protein AURANDRAFT_37947 [Aureococcus anophagefferens] >gi|323450812|gb|EGB06691.1| hypothetical protein AURANDRAFT_37947 [Aureococcus anophagefferens])

HSP 1 Score: 821.617 bits (2121), Expect = 0.000e+0
Identity = 391/454 (86.12%), Postives = 420/454 (92.51%), Query Frame = 0
Query:    5 EAGFKTACVTKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIHYMCREAPRAVYELESYGLPFSRTEDGKIYQRAFGGQSLKYGKGGQAYRCACAADRTGHAMLHTLYGRSLAFNTTYFIEYFALDLIMDGDGRCVGITALNMEDGTLHRIHANNTVLATGGYGRAYFSCTSAHTCTGDGNAMVLRAGLPVEDPEFVQFHPTGIYGAGCLITEGCRGEGGILRNAEGERFMERYAPTAKDLASRDVVSRAMTMEIREGRGVGKEKDHLFLHLDHLPPDLLAERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHFGEVIAPKKKADGS-LDPDHVIPGLFAAGEAACASVHGANRLGANSLLDIVVFGRATALRIADIAKPGDKVPPMPADAGQRSVEDLDKVRFASGSTNTATIRKKMQKTMQEHAAVYR 457
            EAGFKTACVTKLFPTRSHTVAAQGGINAALGNM+EDDW+WHMYDTVKGSDWLGDQDAIHYMCREAP+AV ELES+GLPFSRT+DGKIYQRAFGGQSL YGKGGQAYRC  AADRTGHAMLHTLYGRSLAF+TTYF+EYFALDLIMD +G CVGI A+NMEDGTLHRI+A+NTVLATGGYGRAYFSCTSAHTCTGDGNAM LRAGL  EDPEFVQFHPTGIYGAGCLITEGCRGEGGILRN+EGERFMERYAP+AKDLASRDVVSRAMTMEIREGRGVGK+ DH +LHLDHLP +LLAERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNH GEVI      DGS +D D V+PGLFAAGEAACASVHGANRLGANSLLDIVVFGRA ALRIADIA+PG  VPP+PADA ++++ D+D +RF+SG   TA +RK MQKTMQ+HAAVYR
Sbjct:   56 EAGFKTACVTKLFPTRSHTVAAQGGINAALGNMSEDDWKWHMYDTVKGSDWLGDQDAIHYMCREAPQAVLELESFGLPFSRTDDGKIYQRAFGGQSLDYGKGGQAYRCCAAADRTGHAMLHTLYGRSLAFDTTYFLEYFALDLIMDDEGSCVGIVAINMEDGTLHRINASNTVLATGGYGRAYFSCTSAHTCTGDGNAMALRAGLAAEDPEFVQFHPTGIYGAGCLITEGCRGEGGILRNSEGERFMERYAPSAKDLASRDVVSRAMTMEIREGRGVGKDADHCYLHLDHLPAELLAERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHLGEVIRQVTGPDGSVIDHDEVVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIADIAEPGAPVPPLPADAAEKTIADVDAIRFSSGPRPTADVRKDMQKTMQDHAAVYR 509          
BLAST of EWM29069.1 vs. NCBI_GenBank
Match: gi|219113829|ref|XP_002186498.1| (succinate dehydrogenase flavoprotein [Phaeodactylum tricornutum CCAP 1055/1] >gi|209583348|gb|ACI65968.1| succinate dehydrogenase flavoprotein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 806.594 bits (2082), Expect = 0.000e+0
Identity = 379/457 (82.93%), Postives = 412/457 (90.15%), Query Frame = 0
Query:    1 MGAAEAGFKTACVTKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIHYMCREAPRAVYELESYGLPFSRTEDGKIYQRAFGGQSLKYGKGGQAYRCACAADRTGHAMLHTLYGRSLAFNTTYFIEYFALDLIMDGDGRCVGITALNMEDGTLHRIHANNTVLATGGYGRAYFSCTSAHTCTGDGNAMVLRAGLPVEDPEFVQFHPTGIYGAGCLITEGCRGEGGILRNAEGERFMERYAPTAKDLASRDVVSRAMTMEIREGRGVGKEKDHLFLHLDHLPPDLLAERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHFGEVIAPKKKADGSLDPDHVIPGLFAAGEAACASVHGANRLGANSLLDIVVFGRATALRIADIAKPGDKVPPMPADAGQRSVEDLDKVRFASGSTNTATIRKKMQKTMQEHAAVYR 457
            MG +EAGFKTACVTKLFPTRSHTVAAQGGINAALGNM EDDWRWHMYDTVKGSDWLGDQDAIHYMCREAP+AV ELE +G+PFSRTE+GKIYQRAFGGQSL +GKGGQAYRCA AADRTGHAMLHTLYGRSLAF+TTYFIEYFA+DL+M+  G CVG+ ALNMEDGT+HRIHA NTVLATGGYGR YFSCTSAHTCTGDGNAM +R GL  +D EFVQFHPTGIYGAGCLITEGCRGEGGILRN+EGERFMERYAP+AKDLASRDVVSR+MTMEIREGRG G +KDH++LHLDHLPPDLLAERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNH+GEVI  K   DG+   D V+PGLFA+GE+ACASVHGANRLGANSLLDIVVFGRA A RIA+IAKPGDK+   P+D G  S+ +LDK+R+A G   TA IR +MQ  MQEHAAVYR
Sbjct:   62 MGLSEAGFKTACVTKLFPTRSHTVAAQGGINAALGNMGEDDWRWHMYDTVKGSDWLGDQDAIHYMCREAPKAVLELEEFGMPFSRTEEGKIYQRAFGGQSLDFGKGGQAYRCAAAADRTGHAMLHTLYGRSLAFDTTYFIEYFAMDLLMNDQGECVGVVALNMEDGTIHRIHAKNTVLATGGYGRTYFSCTSAHTCTGDGNAMAMRQGLSNQDNEFVQFHPTGIYGAGCLITEGCRGEGGILRNSEGERFMERYAPSAKDLASRDVVSRSMTMEIREGRGAGPKKDHIYLHLDHLPPDLLAERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHYGEVIRTKFDKDGNFSKDEVVPGLFASGESACASVHGANRLGANSLLDIVVFGRACANRIAEIAKPGDKIADGPSDVGFGSIAELDKLRYAEGHATTADIRSEMQSVMQEHAAVYR 518          
BLAST of EWM29069.1 vs. NCBI_GenBank
Match: gi|673032278|ref|XP_008870100.1| (succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial [Aphanomyces invadans] >gi|574474100|gb|ETW01102.1| succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial [Aphanomyces invadans])

HSP 1 Score: 801.586 bits (2069), Expect = 0.000e+0
Identity = 378/457 (82.71%), Postives = 415/457 (90.81%), Query Frame = 0
Query:    4 AEAGFKTACVTKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIHYMCREAPRAVYELESYGLPFSRTEDGKIYQRAFGGQSLKYGKGGQAYRCACAADRTGHAMLHTLYGRSLAFNTTYFIEYFALDLIMDGDGRCVGITALNMEDGTLHRIHANNTVLATGGYGRAYFSCTSAHTCTGDGNAMVLRAGLPVEDPEFVQFHPTGIYGAGCLITEGCRGEGGILRNAEGERFMERYAPTAKDLASRDVVSRAMTMEIREGRGVGKEKDHLFLHLDHLPPDLLAERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHFGEVIAPKKKADGSLD---PDHVIPGLFAAGEAACASVHGANRLGANSLLDIVVFGRATALRIADIAKPGDKVPPMPADAGQRSVEDLDKVRFASGSTNTATIRKKMQKTMQEHAAVYR 457
            AEAGFKTAC+TKLFPTRSHTVAAQGGINAAL NMTEDDWRWHMYDTVKGSDWLGDQDAIHYMC+EAPRAV ELE+YGLPFSRT++GKIYQRAFGGQSL+YGKGGQAYRCACAADRTGHAMLHTLYGRSLAF+T YFIEYFALDLIM+  G C G+ ALNMEDGT+HR H NNTVLATGGYGRAYFSCTSAHTCTGDG  M LRAG+P++DPEFVQFHPTGIYGAGCLITEG RGEGGILRN+EGERFMERYAP+AKDLASRDVVSRAMTMEIREGRGVGKEKDH++LHLDHLPP+LLAERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNH+GEV+ P       ++   PD VI GLFAAGEAA ASVHGANRLGANSLLDIVVFGRA ALRIA+I+KPG+   P+P +AG++S+  +D +R+A+G+  TA +R +MQKTMQ  AAVYR
Sbjct:   52 AEAGFKTACITKLFPTRSHTVAAQGGINAALANMTEDDWRWHMYDTVKGSDWLGDQDAIHYMCKEAPRAVLELEAYGLPFSRTDEGKIYQRAFGGQSLQYGKGGQAYRCACAADRTGHAMLHTLYGRSLAFDTEYFIEYFALDLIMNDQGECCGVIALNMEDGTIHRFHTNNTVLATGGYGRAYFSCTSAHTCTGDGTGMALRAGIPLQDPEFVQFHPTGIYGAGCLITEGSRGEGGILRNSEGERFMERYAPSAKDLASRDVVSRAMTMEIREGRGVGKEKDHIYLHLDHLPPELLAERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHYGEVVMPDTSGLPDVNKTYPDKVIKGLFAAGEAASASVHGANRLGANSLLDIVVFGRAAALRIAEISKPGEAKRPLPRNAGEQSLHMVDSIRYANGAIPTAELRLEMQKTMQSDAAVYR 508          
BLAST of EWM29069.1 vs. NCBI_GenBank
Match: gi|1210531640|dbj|GAX09996.1| (succinate dehydrogenase (ubiquinone) flavoprotein subunit [Fistulifera solaris])

HSP 1 Score: 800.431 bits (2066), Expect = 0.000e+0
Identity = 377/457 (82.49%), Postives = 412/457 (90.15%), Query Frame = 0
Query:    1 MGAAEAGFKTACVTKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIHYMCREAPRAVYELESYGLPFSRTEDGKIYQRAFGGQSLKYGKGGQAYRCACAADRTGHAMLHTLYGRSLAFNTTYFIEYFALDLIMDGDGRCVGITALNMEDGTLHRIHANNTVLATGGYGRAYFSCTSAHTCTGDGNAMVLRAGLPVEDPEFVQFHPTGIYGAGCLITEGCRGEGGILRNAEGERFMERYAPTAKDLASRDVVSRAMTMEIREGRGVGKEKDHLFLHLDHLPPDLLAERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHFGEVIAPKKKADGSLDPDHVIPGLFAAGEAACASVHGANRLGANSLLDIVVFGRATALRIADIAKPGDKVPPMPADAGQRSVEDLDKVRFASGSTNTATIRKKMQKTMQEHAAVYR 457
            MG +EAGFKTACVTKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIHYMCREAP+AV ELE +G+PFSRTE+GKIYQRAFGGQSLK+GKGGQAYRCA AADRTGHAMLHTLYGRSLAF+TTYFIEYFALDL+MD +G CVG+  LNMEDG++HRIHA NTVLATGGYGRAYFSCTSAHTCTGDGNAM LR GL  +D EFVQFHPTGIYGAGCL+TEGCRGEGGILRN+EGERFMERYAP+AKDLASRDVVSRAMTMEIREGRGVG +KDH++LHLDHLP DLLA+RLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNH GEVI     + G+   D ++PGLFAAGE A ASVHGANRLGANSLLDIVVFGRA ALRIA+ +KPGDK+P + ADAG  S+E LD +R+  G+   + +R +MQ TMQEHAAVYR
Sbjct:   53 MGLSEAGFKTACVTKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIHYMCREAPKAVLELEEFGMPFSRTEEGKIYQRAFGGQSLKFGKGGQAYRCAAAADRTGHAMLHTLYGRSLAFDTTYFIEYFALDLLMDDNGACVGVIVLNMEDGSIHRIHAKNTVLATGGYGRAYFSCTSAHTCTGDGNAMALRKGLSNQDNEFVQFHPTGIYGAGCLMTEGCRGEGGILRNSEGERFMERYAPSAKDLASRDVVSRAMTMEIREGRGVGPKKDHIYLHLDHLPADLLAQRLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHHGEVIKTVFDSKGNFVEDGIVPGLFAAGEVASASVHGANRLGANSLLDIVVFGRACALRIAETSKPGDKIPDLKADAGFDSIEYLDNLRYKEGTCTPSQVRSEMQSTMQEHAAVYR 509          
BLAST of EWM29069.1 vs. NCBI_GenBank
Match: gi|1210526878|dbj|GAX14526.1| (succinate dehydrogenase (ubiquinone) flavoprotein subunit [Fistulifera solaris])

HSP 1 Score: 800.431 bits (2066), Expect = 0.000e+0
Identity = 377/457 (82.49%), Postives = 413/457 (90.37%), Query Frame = 0
Query:    1 MGAAEAGFKTACVTKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIHYMCREAPRAVYELESYGLPFSRTEDGKIYQRAFGGQSLKYGKGGQAYRCACAADRTGHAMLHTLYGRSLAFNTTYFIEYFALDLIMDGDGRCVGITALNMEDGTLHRIHANNTVLATGGYGRAYFSCTSAHTCTGDGNAMVLRAGLPVEDPEFVQFHPTGIYGAGCLITEGCRGEGGILRNAEGERFMERYAPTAKDLASRDVVSRAMTMEIREGRGVGKEKDHLFLHLDHLPPDLLAERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHFGEVIAPKKKADGSLDPDHVIPGLFAAGEAACASVHGANRLGANSLLDIVVFGRATALRIADIAKPGDKVPPMPADAGQRSVEDLDKVRFASGSTNTATIRKKMQKTMQEHAAVYR 457
            MG +EAGFKTACVTKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIHYMCREAP+AV ELE +G+PFSRTE+GKIYQRAFGGQSLK+GKGGQAYRCA AADRTGHAMLHTLYGRSLAF+TTYFIEYFALDL+MD +G CVG+  LNMEDG++HRIHA NTVLATGGYGRAYFSCTSAHTCTGDGNAM LR GL  +D EFVQFHPTGIYGAGCL+TEGCRGEGGILRN+EGERFMERYAP+AKDLASRDVVSRAMTMEIREGRGVG +KDH++LHLDHLP DLLA+RLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNH GEVI    ++ G+   D ++PGLFAAGE A ASVHGANRLGANSLLDIVVFGRA ALRIA+ +KPGDK+P + ADAG  S+E LD +R+  G+   + +R +MQ TMQEHAAVYR
Sbjct:   53 MGLSEAGFKTACVTKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIHYMCREAPKAVLELEEFGMPFSRTEEGKIYQRAFGGQSLKFGKGGQAYRCAAAADRTGHAMLHTLYGRSLAFDTTYFIEYFALDLLMDDNGACVGVIVLNMEDGSIHRIHAKNTVLATGGYGRAYFSCTSAHTCTGDGNAMALRKGLSNQDNEFVQFHPTGIYGAGCLMTEGCRGEGGILRNSEGERFMERYAPSAKDLASRDVVSRAMTMEIREGRGVGPKKDHIYLHLDHLPADLLAQRLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHHGEVIKTVFESKGNFVGDGIVPGLFAAGEVASASVHGANRLGANSLLDIVVFGRACALRIAETSKPGDKIPDLKADAGFDSIEYLDNLRYKEGTCTPSQVRSEMQSTMQEHAAVYR 509          
BLAST of EWM29069.1 vs. NCBI_GenBank
Match: gi|698779553|ref|XP_009822820.1| (succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [Aphanomyces astaci] >gi|574122481|gb|ETV87957.1| succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [Aphanomyces astaci])

HSP 1 Score: 800.045 bits (2065), Expect = 0.000e+0
Identity = 378/457 (82.71%), Postives = 414/457 (90.59%), Query Frame = 0
Query:    4 AEAGFKTACVTKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIHYMCREAPRAVYELESYGLPFSRTEDGKIYQRAFGGQSLKYGKGGQAYRCACAADRTGHAMLHTLYGRSLAFNTTYFIEYFALDLIMDGDGRCVGITALNMEDGTLHRIHANNTVLATGGYGRAYFSCTSAHTCTGDGNAMVLRAGLPVEDPEFVQFHPTGIYGAGCLITEGCRGEGGILRNAEGERFMERYAPTAKDLASRDVVSRAMTMEIREGRGVGKEKDHLFLHLDHLPPDLLAERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHFGEVIAPKKKADGSLD---PDHVIPGLFAAGEAACASVHGANRLGANSLLDIVVFGRATALRIADIAKPGDKVPPMPADAGQRSVEDLDKVRFASGSTNTATIRKKMQKTMQEHAAVYR 457
            AEAGFKTAC+TKLFPTRSHTVAAQGGINAAL NMTEDDWRWHMYDTVKGSDWLGDQDAIHYMC+EAPRAV ELE+YGLPFSRT++GKIYQRAFGGQSL YGKGGQAYRCACAADRTGHAMLHTLYGRSLAF+T YFIEYFALDLIM+ +G C G+ ALNMEDGT+HR H NNTVLATGGYGRAYFSCTSAHTCTGDG  M LRAG+P++DPEFVQFHPTGIYGAGCLITEG RGEGGILRN+EGERFMERYAP+AKDLASRDVVSRAMTMEIREGRGVGKEKDH++LHLDHLPP+LLAERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTN+FGEV+ P       ++   PD V+ GLFAAGEAA ASVHGANRLGANSLLDIVVFGRA ALRIADI+KPG+   P+P +AG +S+  +D +R+A+G+  TA +R +MQKTMQ  AAVYR
Sbjct:   52 AEAGFKTACITKLFPTRSHTVAAQGGINAALANMTEDDWRWHMYDTVKGSDWLGDQDAIHYMCKEAPRAVLELEAYGLPFSRTDEGKIYQRAFGGQSLDYGKGGQAYRCACAADRTGHAMLHTLYGRSLAFDTEYFIEYFALDLIMNDEGECCGVIALNMEDGTIHRFHTNNTVLATGGYGRAYFSCTSAHTCTGDGTGMALRAGIPLQDPEFVQFHPTGIYGAGCLITEGSRGEGGILRNSEGERFMERYAPSAKDLASRDVVSRAMTMEIREGRGVGKEKDHIYLHLDHLPPELLAERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNYFGEVVVPDTTGLPDVNKTYPDKVVKGLFAAGEAASASVHGANRLGANSLLDIVVFGRAAALRIADISKPGEAKRPLPRNAGDQSLHMVDTIRYANGAIPTAELRLEMQKTMQSDAAVYR 508          
BLAST of EWM29069.1 vs. NCBI_GenBank
Match: gi|813192166|ref|XP_012207965.1| (succinate dehydrogenase flavoprotein subunit [Saprolegnia parasitica CBS 223.65] >gi|641526989|gb|KDO21309.1| succinate dehydrogenase flavoprotein subunit [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 798.505 bits (2061), Expect = 0.000e+0
Identity = 376/457 (82.28%), Postives = 412/457 (90.15%), Query Frame = 0
Query:    4 AEAGFKTACVTKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIHYMCREAPRAVYELESYGLPFSRTEDGKIYQRAFGGQSLKYGKGGQAYRCACAADRTGHAMLHTLYGRSLAFNTTYFIEYFALDLIMDGDGRCVGITALNMEDGTLHRIHANNTVLATGGYGRAYFSCTSAHTCTGDGNAMVLRAGLPVEDPEFVQFHPTGIYGAGCLITEGCRGEGGILRNAEGERFMERYAPTAKDLASRDVVSRAMTMEIREGRGVGKEKDHLFLHLDHLPPDLLAERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHFGEVIAPKKKA---DGSLDPDHVIPGLFAAGEAACASVHGANRLGANSLLDIVVFGRATALRIADIAKPGDKVPPMPADAGQRSVEDLDKVRFASGSTNTATIRKKMQKTMQEHAAVYR 457
            AEAG KTAC+TKLFPTRSHTVAAQGGINAAL NMTEDDWRWHMYDTVKGSDWLGDQDAIHYMC+EAPRAV ELE+YGLPFSRT+DGKIYQRAFGGQSL YGKGGQAYRCACAADRTGHAMLHTLYGRSLAF+T+YFIEYFALDLIM+  G C G+ A+NMEDG++HR H NNTVLATGGYGRAYFSCTSAHTCTGDG  M +RAG+P++DPEFVQFHPTGIYGAGCLITEG RGEGGILRN+EGERFMERYAP+AKDLASRDVVSRAMTMEIREGRGVG EKDH++LHLDHLP +LLAERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHFGEV+ P          + PD V+ GLFAAGEAACASVHGANRLGANSLLDIVVFGRA ALRIA+I+KPG+   PMPA+AG+ S+  +D +R+A+G+  TA +R +MQKTMQ  AAVYR
Sbjct:   56 AEAGLKTACITKLFPTRSHTVAAQGGINAALANMTEDDWRWHMYDTVKGSDWLGDQDAIHYMCKEAPRAVLELEAYGLPFSRTDDGKIYQRAFGGQSLDYGKGGQAYRCACAADRTGHAMLHTLYGRSLAFDTSYFIEYFALDLIMNDAGECCGVIAMNMEDGSIHRFHTNNTVLATGGYGRAYFSCTSAHTCTGDGTGMAIRAGIPLQDPEFVQFHPTGIYGAGCLITEGSRGEGGILRNSEGERFMERYAPSAKDLASRDVVSRAMTMEIREGRGVGNEKDHIYLHLDHLPAELLAERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHFGEVVIPDTTGLPDANQMYPDKVVKGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIAEISKPGEAKRPMPANAGEASLSMVDSLRYANGAIPTADLRLEMQKTMQNDAAVYR 512          
The following BLAST results are available for this feature:
BLAST of EWM29069.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111586|gb|EWM29067.1|0.000e+0100.00succinate dehydrogenase flavoprotein subunit [Nann... [more]
gi|585111587|gb|EWM29068.1|0.000e+0100.00succinate dehydrogenase flavoprotein subunit [Nann... [more]
gi|585111588|gb|EWM29069.1|0.000e+0100.00succinate dehydrogenase flavoprotein subunit [Nann... [more]
gi|676390327|ref|XP_009038442.1|0.000e+086.12hypothetical protein AURANDRAFT_37947 [Aureococcus... [more]
gi|219113829|ref|XP_002186498.1|0.000e+082.93succinate dehydrogenase flavoprotein [Phaeodactylu... [more]
gi|673032278|ref|XP_008870100.1|0.000e+082.71succinate dehydrogenase [ubiquinone] flavoprotein ... [more]
gi|1210531640|dbj|GAX09996.1|0.000e+082.49succinate dehydrogenase (ubiquinone) flavoprotein ... [more]
gi|1210526878|dbj|GAX14526.1|0.000e+082.49succinate dehydrogenase (ubiquinone) flavoprotein ... [more]
gi|698779553|ref|XP_009822820.1|0.000e+082.71succinate dehydrogenase [ubiquinone] flavoprotein ... [more]
gi|813192166|ref|XP_012207965.1|0.000e+082.28succinate dehydrogenase flavoprotein subunit [Sapr... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1598rna1598Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications