rna1596, rna1596 (mRNA) Nannochloropsis gaditana

Overview
Namerna1596
Unique Namerna1596
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1579
Alignment locationCM002457.1:1022842..1024195 +

Link to JBrowse

Properties
Property NameValue
ProductTetraspanin
Orig transcript idgnl|cribi|Naga_100024g39.4357.mrna
Orig protein idgnl|cribi|Naga_100024g39.4357
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:1022842..1024195 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100024g39gene1535Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1596rna1596-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29099.1cds1592Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1596 ID=rna1596|Name=rna1596|organism=Nannochloropsis gaditana|type=mRNA|length=1579bp
TACAGACATGACGGGAGTTCAAGGCGTATTCTAGAAGTGGGGAAAGCATT
GGACATGGACCTCTTGGCGTTGCTGCCCCCTTTTCCGAAGCCTGGGAAGC
ACCACGTACTGCTTGTTGTGGTTTCAGCAGTTGCTGCCTCTGCGACGACT
GCAGCTATCTTGCTTGTATTTTCCCAGCGTCGATCGAAATTTAAACGTAC
CTTGGGGAATAAATGTGGCAATCGGGAAAGTGGTTATGCGGCATTGATCG
GTAACACGCCGCTCATCGAATTGACTAGTCTATCGCGCGCGACGGAATGC
CGTGTCTTGGCAAAGGTGGAATATCTGAATCCCGGTGGTACCAGCAAAGA
CCGCGTGGCACTGCGAATGATTCAGGAGGCAGAAAAGGCCTGTTTATTAC
ATCCTGGTAGTACGGTGATAGAAGGGACCTCAGGAAGTACGGGTATTGCT
TTAGCCTCCTTGTGCCGTGCCCGAGGGTATCGATGCTTGATAGTCATGCC
AGACGACCAGGCGGCGGAGAAAGCCCATTTATTGAAACAGTTTGGTGCTG
AGGTTGAAATTGTCAAGCCTGCAAGCATTGCCAACCCTAACCATTACTGT
AATCGTGCGCGGGCACGGGCAGAAGAGTTAGGTGACGAGGCAGTTTTCAT
GGATCAGTTCGAGACCATGGCAAACTTTCGAGCCCATTATGAGGGAACAG
GGCCAGAAATGTGGGAGCAGGTAGTGGCTGGATACGGTGCCCGCCCAGAC
GCTTTCGTCATGTCGGCAGGGACGGGTGGCACGCTGGCGGGGGTGTCTCG
GGCCTGGAAGGAGCGTGAGGAGAAGGTACAAGTGTTTCTGGTGGACCCCC
CGGGCTCCTCCCTCTACCACAAGGTCAAACACGGCGTCTGCTACTCGACG
GCGCAGCGGGAGCGAGGAGTGCGGCGCCACCGCTACGATTCTCTCGCCGA
AGGGATTGGGGTGGACAGGCTGACGGCAAACTTTGGAAAAGCGCGGATCG
ACGAGGCCTTCCATGTCTCGGATCAGGAGGCAGTTGACATGGCCCATTTT
CTCCTCCAGGCAGAAGGCATTTTCGTGGGGAGCTCGACAGCGATAAATCT
GGTGGGCTGTGTGCGTGCAGCTCGGGTGCTGGGGCCGGGTCACACAGTGG
TCACGGTCCTTTGCGATTCAGGACAGCGACACTTGACTCGATTTTGGAAC
CGGAGAGTAGTAGAAGGCGCTGAGTTGAAATGGCCGGAGACACCACCCGT
GAATCTGAACTTCTTGCAGAAAAATGGACCAGGAGACAAGGAGGATTTGA
GAGAAGGAGGGCATTGAGAGGATCGGGCGCGACTTGAGCTCTTTGCAATG
GTGAATGGTGAAACTATGTGCTCCGTCCGCCACGCCAAGGACTGCGATCT
GTAAATGACACCTTTGTATACTGTTCGTTTCATCATCCCTACTCATGTAC
ACATGTAATATGTACGCACGCGTTGCATGCAAGGGTTCTCACGCCACCTC
GTTCTACTCATTCTCACGCCCACTCCTCCTTGACGACAATCTCTTTTTTC
ACGACCGCGGCCCTGGCACCGCCCTTCCC
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protein sequence of rna1596

>rna1596-protein ID=rna1596-protein|Name=rna1596|organism=Nannochloropsis gaditana|type=polypeptide|length=403bp
MHYAIPRPHHFLLKSISATHSRIAKLLLRTVPQADAYVHAQQASDRPDVN
MLNDNIKFVVSTSNTCFCIAGLVLGGLAAYLYYATSLAAVTLTSLTQGWI
MWTMLVGLGLVFLSCLGCFGVKRQIVRVGPCGGRRLLSLYQLLLLGLLFA
FTTAFLAMRTLHTQVPLLLDNPDAVYARSEQNLLVPYFNRLYFKTRKAAV
RAHDGGAGSFNWFADWTRQSCPLSMDVGTCTSCGTDGDGGTSVPYTDGCC
PRDDLCTAGNLDACPYHRCRLGVARFLSKRLGALQKYLNFLLILQLIVLI
STCMLICYNPRDSFAELLAKTGVVIMHERTDFLPKDEHRTSRILKPPTTK
KEQPSHVGVKRSQNSAIASPTTTSPVVDIEGKNNTTMYGGRRCGSRRSPA
HMV
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mRNA from alignment at CM002457.1:1022842..1024195+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1596 ID=rna1596|Name=rna1596|organism=Nannochloropsis gaditana|type=mRNA|length=1354bp|location=Sequence derived from alignment at CM002457.1:1022842..1024195+ (Nannochloropsis gaditana)
CCAAAAATGCACTATGCTATTCCTCGCCCTCACCACTTCCTCTTGAAATC
AATATCAGCCACACACAGCAGGATTGCCAAACTTTTATTGAGAACGGTGC
CGCAGGCTGACGCTTACGTGCACGCGCAGCAAGCGTCCGATAGACCTGAC
GTGAACATGCTGAATGACAACATCAAGTTTGTTGTCTCTACGAGCAACAC
CTGCTTTTGCATCGCGGGCTTAGTCTTGGGAGGTCTAGCAGCATATCTTT
ACTACGCAACATCCCTTGCTGCGGTGACATTGACCAGTCTTACCCAAGGA
TGGATCATGTGGACGATGTTGGTCGGCCTTGGGCTTGTCTTTTTATCCTG
TCTTGGATGCTTTGGAGTAAAACGTCAAATCGTCCGCGTCGGGCcgtgcg
gaggaaggaggttgcTGTCATTGTACCAGCTTCTACTGTTGGGACTACTC
TTTGCTTTTACAACGGCATTTCTGGCTATGCGGACTCTTCACACGCaggt
ccctcttctcttggaTAATCCAGACGCAGTTTACGCTCGCTCAGAGCAAA
ATTTGCTCGTCCCTTACTTCAATCGTCTTTACTTTAAAACCAGAAAAGCT
GCGGTTAGGGCGCAcgacggaggggcgggatCTTTTAATTGGTTTGCAGA
CTGGACGCGTCAGAGCTGCCCTTTGTCCATGGATGTTGGTACCTGCACCT
CGTGTGGTActgacggcgacggcggtaCCAGTGTGCCCTATACAGATGGA
TGTTGTCCTCGGGATGACCTCTGCACCGCGGGAAACCTAGATGCCTGTCC
ATATCACCGCTGTCGGTTGGGTGTGGCCCGCTTTCTAAGTAAGCGCCTGG
GAGCGTTGCAAAAGTACCTCAACTTTCTGTTGATACTACAATTGATTGTT
CTCATAAGCACATGCATGCTCATCTGCTACAATCCGCGCGACTCCTTTGC
AGAGCTATTAGCCAAGACAGGTGTCGTCATCATGCACGAACGCACAGATT
TTTTGCCCAAAGATGAGCATCGTACCTCTCGCATTCTTAAACCTCCGACG
ACAAAAAAGGAGCAACCATCTCACGTAGGTGTAAAAAGGTCACAGAACTC
AGCGATCGCGAGTCCTACAACAACTTCGCCTGTGGTGGATATCGAAGGGA
AGAACAATACTACAATGTATGGAGGGCGTCGATGTGGTTCTCGGCGCTCG
CCTGCTCATATGGTATGAAAAATGAATGAAATAGGGAAAAAAGCTTGCTC
ATCGATGAATGTTAATCTAATGACAGAAAATACTACATAGGAGATGTCTC
AAAGACAAATGAACAATTAACCCTCGTAGCAATCgagatggggaggttga
CACG
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Coding sequence (CDS) from alignment at CM002457.1:1022842..1024195+

>rna1596 ID=rna1596|Name=rna1596|organism=Nannochloropsis gaditana|type=CDS|length=1212bp|location=Sequence derived from alignment at CM002457.1:1022842..1024195+ (Nannochloropsis gaditana)
ATGCACTATGCTATTCCTCGCCCTCACCACTTCCTCTTGAAATCAATATC
AGCCACACACAGCAGGATTGCCAAACTTTTATTGAGAACGGTGCCGCAGG
CTGACGCTTACGTGCACGCGCAGCAAGCGTCCGATAGACCTGACGTGAAC
ATGCTGAATGACAACATCAAGTTTGTTGTCTCTACGAGCAACACCTGCTT
TTGCATCGCGGGCTTAGTCTTGGGAGGTCTAGCAGCATATCTTTACTACG
CAACATCCCTTGCTGCGGTGACATTGACCAGTCTTACCCAAGGATGGATC
ATGTGGACGATGTTGGTCGGCCTTGGGCTTGTCTTTTTATCCTGTCTTGG
ATGCTTTGGAGTAAAACGTCAAATCGTCCGCGTCGGGCcgtgcggaggaa
ggaggttgcTGTCATTGTACCAGCTTCTACTGTTGGGACTACTCTTTGCT
TTTACAACGGCATTTCTGGCTATGCGGACTCTTCACACGCaggtccctct
tctcttggaTAATCCAGACGCAGTTTACGCTCGCTCAGAGCAAAATTTGC
TCGTCCCTTACTTCAATCGTCTTTACTTTAAAACCAGAAAAGCTGCGGTT
AGGGCGCAcgacggaggggcgggatCTTTTAATTGGTTTGCAGACTGGAC
GCGTCAGAGCTGCCCTTTGTCCATGGATGTTGGTACCTGCACCTCGTGTG
GTActgacggcgacggcggtaCCAGTGTGCCCTATACAGATGGATGTTGT
CCTCGGGATGACCTCTGCACCGCGGGAAACCTAGATGCCTGTCCATATCA
CCGCTGTCGGTTGGGTGTGGCCCGCTTTCTAAGTAAGCGCCTGGGAGCGT
TGCAAAAGTACCTCAACTTTCTGTTGATACTACAATTGATTGTTCTCATA
AGCACATGCATGCTCATCTGCTACAATCCGCGCGACTCCTTTGCAGAGCT
ATTAGCCAAGACAGGTGTCGTCATCATGCACGAACGCACAGATTTTTTGC
CCAAAGATGAGCATCGTACCTCTCGCATTCTTAAACCTCCGACGACAAAA
AAGGAGCAACCATCTCACGTAGGTGTAAAAAGGTCACAGAACTCAGCGAT
CGCGAGTCCTACAACAACTTCGCCTGTGGTGGATATCGAAGGGAAGAACA
ATACTACAATGTATGGAGGGCGTCGATGTGGTTCTCGGCGCTCGCCTGCT
CATATGGTATGA
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Synonyms
Publications