EWM29099.1, cds1592 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29099.1 vs. NCBI_GenBank
Match: gi|585111618|gb|EWM29099.1| (Tetraspanin [Nannochloropsis gaditana]) HSP 1 Score: 832.787 bits (2150), Expect = 0.000e+0 Identity = 403/403 (100.00%), Postives = 403/403 (100.00%), Query Frame = 0 Query: 1 MHYAIPRPHHFLLKSISATHSRIAKLLLRTVPQADAYVHAQQASDRPDVNMLNDNIKFVVSTSNTCFCIAGLVLGGLAAYLYYATSLAAVTLTSLTQGWIMWTMLVGLGLVFLSCLGCFGVKRQIVRVGPCGGRRLLSLYQLLLLGLLFAFTTAFLAMRTLHTQVPLLLDNPDAVYARSEQNLLVPYFNRLYFKTRKAAVRAHDGGAGSFNWFADWTRQSCPLSMDVGTCTSCGTDGDGGTSVPYTDGCCPRDDLCTAGNLDACPYHRCRLGVARFLSKRLGALQKYLNFLLILQLIVLISTCMLICYNPRDSFAELLAKTGVVIMHERTDFLPKDEHRTSRILKPPTTKKEQPSHVGVKRSQNSAIASPTTTSPVVDIEGKNNTTMYGGRRCGSRRSPAHMV 403 MHYAIPRPHHFLLKSISATHSRIAKLLLRTVPQADAYVHAQQASDRPDVNMLNDNIKFVVSTSNTCFCIAGLVLGGLAAYLYYATSLAAVTLTSLTQGWIMWTMLVGLGLVFLSCLGCFGVKRQIVRVGPCGGRRLLSLYQLLLLGLLFAFTTAFLAMRTLHTQVPLLLDNPDAVYARSEQNLLVPYFNRLYFKTRKAAVRAHDGGAGSFNWFADWTRQSCPLSMDVGTCTSCGTDGDGGTSVPYTDGCCPRDDLCTAGNLDACPYHRCRLGVARFLSKRLGALQKYLNFLLILQLIVLISTCMLICYNPRDSFAELLAKTGVVIMHERTDFLPKDEHRTSRILKPPTTKKEQPSHVGVKRSQNSAIASPTTTSPVVDIEGKNNTTMYGGRRCGSRRSPAHMV Sbjct: 1 MHYAIPRPHHFLLKSISATHSRIAKLLLRTVPQADAYVHAQQASDRPDVNMLNDNIKFVVSTSNTCFCIAGLVLGGLAAYLYYATSLAAVTLTSLTQGWIMWTMLVGLGLVFLSCLGCFGVKRQIVRVGPCGGRRLLSLYQLLLLGLLFAFTTAFLAMRTLHTQVPLLLDNPDAVYARSEQNLLVPYFNRLYFKTRKAAVRAHDGGAGSFNWFADWTRQSCPLSMDVGTCTSCGTDGDGGTSVPYTDGCCPRDDLCTAGNLDACPYHRCRLGVARFLSKRLGALQKYLNFLLILQLIVLISTCMLICYNPRDSFAELLAKTGVVIMHERTDFLPKDEHRTSRILKPPTTKKEQPSHVGVKRSQNSAIASPTTTSPVVDIEGKNNTTMYGGRRCGSRRSPAHMV 403
BLAST of EWM29099.1 vs. NCBI_GenBank
Match: gi|299116787|emb|CBN74900.1| (hypothetical protein Esi_0056_0099 [Ectocarpus siliculosus]) HSP 1 Score: 141.739 bits (356), Expect = 5.693e-33 Identity = 101/292 (34.59%), Postives = 142/292 (48.63%), Query Frame = 0 Query: 49 VNMLNDNIKFVVSTSNTCFCIAGLVLGGLAAYLYYATSLAAVTLTSLTQGWI----MWTMLVGLGLVFLSCLGCFGVKRQIVRVGPCGGRRLLSLYQLLLLGLLFAFTTAFLAMRTLHTQVPLLLDNPDAVYARSE-QNLLVPYFNRLYFKTRKAAVRAHDGGAGSFNWFADWTRQSCP--LSMDVGTCTSCGTDGDG---GTSVPYT---DGCCPRDDLCTAGNLDACPYHRCRLGVARFLSKRLGALQKYLNFLLILQLIVLISTCMLICYNPRDSFAELLAKTGVVIMH 327 + LN IKFVV +N L LGG+ + A+ L A L Q ++ + TM+VG+ + +S +GC G RQI R GRR+LSLYQL+L+ + MR +V L D E + FN YF+ +A AG +W CP +S D +C+ DG G S P T +GCCP ++ C AG +ACPY CR G+ L + +KY F+ +L+ +VLI TC+LICYNPRDS ++L KTG ++ Sbjct: 1 MGKLNSFIKFVVFNANAL-----LFLGGVG-IVIVASLLLAADFIKLAQTYMQTLGIITMMVGILVAAMSIIGCVGTNRQIERDRLWSGRRILSLYQLILV--AVVVGQGVVQMRLYSIEVSLEEAAADLPIQHGEFEGRFREGFNEAYFEQLCSA------SAGGDSWVWSLVEDHCPDAISRDACSCSDI-LDGSGLPARCSTPETYSAEGCCPDEEFCEAGKEEACPYAPCRTGILEVLLSYITPARKYSTFVFVLEGMVLILTCLLICYNPRDSTEDILIKTGTIMRQ 277
BLAST of EWM29099.1 vs. NCBI_GenBank
Match: gi|397648234|gb|EJK78056.1| (hypothetical protein THAOC_00069 [Thalassiosira oceanica]) HSP 1 Score: 115.931 bits (289), Expect = 6.061e-26 Identity = 81/236 (34.32%), Postives = 117/236 (49.58%), Query Frame = 0 Query: 104 MLVGLGLVFLSCLGCFGVKRQIVRVGPCGGRRLLSLYQLLLLGLL-FAFTTAFLAMRTLHTQVPLLLDNPDAVYARSEQNLLVPYFNRLYFKTRKAAVRAHDGGAGSFNWFADWTRQSCPLSMDVGTCTSCGTDGDGGTSVPY-----TD-----GCCPRDDLCTAGNLDACPYHRCRLGVARFLSKRLGALQKYLNFLLILQLIVLISTCMLICYNPRDSFAELLAKTGVVIMHE 328 +L+ L ++F S GC G RQ R G GR++L L+QLLL+ +L FAF + LH V L +P Y E+ L V +F+ YFK+ ++D AG +W + +CP M C G D + Y TD GCCP +LC +G ACPY CRL + LSK +G + + ++++ + +LICYNPRDS L KTGV+ + + Sbjct: 8 LLLSLSVLFCSFYGCNGALRQTKRKGCFAGRKILCLHQLLLIAVLVFAFANLEWTTK-LHRSVRSFLRDPSQDYNGFEERLSV-FFDGEYFKS---LCSSNDSTAG--DWLEKFVSANCPQQMKPTACALSGRKRDMCDTTCYALQGDTDRFQELGCCPSKELCQSGFESACPYDMCRLEIFHELSKFVGPAKVSAQASVAASGLMIVLSILLICYNPRDSIEIELYKTGVLSIED 236 The following BLAST results are available for this feature:
BLAST of EWM29099.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 3
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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