EWM29099.1, cds1592 (CDS) Nannochloropsis gaditana

Overview
NameEWM29099.1
Unique Namecds1592
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:1022848..1024059 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29099.1
ProductTetraspanin
Orig transcript idgnl|cribi|Naga_100024g39.4357.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:1022848..1024059 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0016021integral component of membrane
Vocabulary: INTERPRO
TermDefinition
IPR018499Tetraspanin/Peripherin
Homology
BLAST of EWM29099.1 vs. NCBI_GenBank
Match: gi|585111618|gb|EWM29099.1| (Tetraspanin [Nannochloropsis gaditana])

HSP 1 Score: 832.787 bits (2150), Expect = 0.000e+0
Identity = 403/403 (100.00%), Postives = 403/403 (100.00%), Query Frame = 0
Query:    1 MHYAIPRPHHFLLKSISATHSRIAKLLLRTVPQADAYVHAQQASDRPDVNMLNDNIKFVVSTSNTCFCIAGLVLGGLAAYLYYATSLAAVTLTSLTQGWIMWTMLVGLGLVFLSCLGCFGVKRQIVRVGPCGGRRLLSLYQLLLLGLLFAFTTAFLAMRTLHTQVPLLLDNPDAVYARSEQNLLVPYFNRLYFKTRKAAVRAHDGGAGSFNWFADWTRQSCPLSMDVGTCTSCGTDGDGGTSVPYTDGCCPRDDLCTAGNLDACPYHRCRLGVARFLSKRLGALQKYLNFLLILQLIVLISTCMLICYNPRDSFAELLAKTGVVIMHERTDFLPKDEHRTSRILKPPTTKKEQPSHVGVKRSQNSAIASPTTTSPVVDIEGKNNTTMYGGRRCGSRRSPAHMV 403
            MHYAIPRPHHFLLKSISATHSRIAKLLLRTVPQADAYVHAQQASDRPDVNMLNDNIKFVVSTSNTCFCIAGLVLGGLAAYLYYATSLAAVTLTSLTQGWIMWTMLVGLGLVFLSCLGCFGVKRQIVRVGPCGGRRLLSLYQLLLLGLLFAFTTAFLAMRTLHTQVPLLLDNPDAVYARSEQNLLVPYFNRLYFKTRKAAVRAHDGGAGSFNWFADWTRQSCPLSMDVGTCTSCGTDGDGGTSVPYTDGCCPRDDLCTAGNLDACPYHRCRLGVARFLSKRLGALQKYLNFLLILQLIVLISTCMLICYNPRDSFAELLAKTGVVIMHERTDFLPKDEHRTSRILKPPTTKKEQPSHVGVKRSQNSAIASPTTTSPVVDIEGKNNTTMYGGRRCGSRRSPAHMV
Sbjct:    1 MHYAIPRPHHFLLKSISATHSRIAKLLLRTVPQADAYVHAQQASDRPDVNMLNDNIKFVVSTSNTCFCIAGLVLGGLAAYLYYATSLAAVTLTSLTQGWIMWTMLVGLGLVFLSCLGCFGVKRQIVRVGPCGGRRLLSLYQLLLLGLLFAFTTAFLAMRTLHTQVPLLLDNPDAVYARSEQNLLVPYFNRLYFKTRKAAVRAHDGGAGSFNWFADWTRQSCPLSMDVGTCTSCGTDGDGGTSVPYTDGCCPRDDLCTAGNLDACPYHRCRLGVARFLSKRLGALQKYLNFLLILQLIVLISTCMLICYNPRDSFAELLAKTGVVIMHERTDFLPKDEHRTSRILKPPTTKKEQPSHVGVKRSQNSAIASPTTTSPVVDIEGKNNTTMYGGRRCGSRRSPAHMV 403          
BLAST of EWM29099.1 vs. NCBI_GenBank
Match: gi|299116787|emb|CBN74900.1| (hypothetical protein Esi_0056_0099 [Ectocarpus siliculosus])

HSP 1 Score: 141.739 bits (356), Expect = 5.693e-33
Identity = 101/292 (34.59%), Postives = 142/292 (48.63%), Query Frame = 0
Query:   49 VNMLNDNIKFVVSTSNTCFCIAGLVLGGLAAYLYYATSLAAVTLTSLTQGWI----MWTMLVGLGLVFLSCLGCFGVKRQIVRVGPCGGRRLLSLYQLLLLGLLFAFTTAFLAMRTLHTQVPLLLDNPDAVYARSE-QNLLVPYFNRLYFKTRKAAVRAHDGGAGSFNWFADWTRQSCP--LSMDVGTCTSCGTDGDG---GTSVPYT---DGCCPRDDLCTAGNLDACPYHRCRLGVARFLSKRLGALQKYLNFLLILQLIVLISTCMLICYNPRDSFAELLAKTGVVIMH 327
            +  LN  IKFVV  +N       L LGG+   +  A+ L A     L Q ++    + TM+VG+ +  +S +GC G  RQI R     GRR+LSLYQL+L+          + MR    +V L     D      E +      FN  YF+   +A       AG  +W        CP  +S D  +C+    DG G     S P T   +GCCP ++ C AG  +ACPY  CR G+   L   +   +KY  F+ +L+ +VLI TC+LICYNPRDS  ++L KTG ++  
Sbjct:    1 MGKLNSFIKFVVFNANAL-----LFLGGVG-IVIVASLLLAADFIKLAQTYMQTLGIITMMVGILVAAMSIIGCVGTNRQIERDRLWSGRRILSLYQLILV--AVVVGQGVVQMRLYSIEVSLEEAAADLPIQHGEFEGRFREGFNEAYFEQLCSA------SAGGDSWVWSLVEDHCPDAISRDACSCSDI-LDGSGLPARCSTPETYSAEGCCPDEEFCEAGKEEACPYAPCRTGILEVLLSYITPARKYSTFVFVLEGMVLILTCLLICYNPRDSTEDILIKTGTIMRQ 277          
BLAST of EWM29099.1 vs. NCBI_GenBank
Match: gi|397648234|gb|EJK78056.1| (hypothetical protein THAOC_00069 [Thalassiosira oceanica])

HSP 1 Score: 115.931 bits (289), Expect = 6.061e-26
Identity = 81/236 (34.32%), Postives = 117/236 (49.58%), Query Frame = 0
Query:  104 MLVGLGLVFLSCLGCFGVKRQIVRVGPCGGRRLLSLYQLLLLGLL-FAFTTAFLAMRTLHTQVPLLLDNPDAVYARSEQNLLVPYFNRLYFKTRKAAVRAHDGGAGSFNWFADWTRQSCPLSMDVGTCTSCGTDGDGGTSVPY-----TD-----GCCPRDDLCTAGNLDACPYHRCRLGVARFLSKRLGALQKYLNFLLILQLIVLISTCMLICYNPRDSFAELLAKTGVVIMHE 328
            +L+ L ++F S  GC G  RQ  R G   GR++L L+QLLL+ +L FAF       + LH  V   L +P   Y   E+ L V +F+  YFK+      ++D  AG  +W   +   +CP  M    C   G   D   +  Y     TD     GCCP  +LC +G   ACPY  CRL +   LSK +G  +      +    ++++ + +LICYNPRDS    L KTGV+ + +
Sbjct:    8 LLLSLSVLFCSFYGCNGALRQTKRKGCFAGRKILCLHQLLLIAVLVFAFANLEWTTK-LHRSVRSFLRDPSQDYNGFEERLSV-FFDGEYFKS---LCSSNDSTAG--DWLEKFVSANCPQQMKPTACALSGRKRDMCDTTCYALQGDTDRFQELGCCPSKELCQSGFESACPYDMCRLEIFHELSKFVGPAKVSAQASVAASGLMIVLSILLICYNPRDSIEIELYKTGVLSIED 236          
The following BLAST results are available for this feature:
BLAST of EWM29099.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|585111618|gb|EWM29099.1|0.000e+0100.00Tetraspanin [Nannochloropsis gaditana][more]
gi|299116787|emb|CBN74900.1|5.693e-3334.59hypothetical protein Esi_0056_0099 [Ectocarpus sil... [more]
gi|397648234|gb|EJK78056.1|6.061e-2634.32hypothetical protein THAOC_00069 [Thalassiosira oc... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1596rna1596Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications