rna1594, rna1594 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1594
Unique Name	rna1594
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3596
Alignment location	CM002457.1:1019493..1021191 +

Link to JBrowse

Properties


Property Name	Value
Product	DNA glycosylase
Orig transcript id	gnl\|cribi\|Naga_100024g41.4307.mrna
Orig protein id	gnl\|cribi\|Naga_100024g41.4307
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002457.1	supercontig	CM002457.1:1019493..1021191 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100024g41	gene1533	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1594	rna1594-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29049.1	cds1590	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002457.1:1019493..1021191+
coding sequence from alignment at CM002457.1:1019493..1021191+

mRNA sequence

>rna1594 ID=rna1594|Name=rna1594|organism=Nannochloropsis gaditana|type=mRNA|length=3596bp
AAATGCCACTCACGTATTGTAACACCCTAAAACAGATACAATTTAGACGA
CCATGACATGGTCATGAAGACACGCGGAGTTAGTGGGGATGCTCTTCGAT
CGTAAACTTCGTGTGTGAACTTTGATGGCCACTGTCAGGGTTGCAGCCTC
GGCGTCTCAGTCAACATCAACCAGCCGCACAACCCGGAAACGCCGCCGTC
CCCCATGGCGCACAATGGTTTTCGCAGCTTCAGCCATACTATGTCCTATT
TCAGCGGGTGTGGATGCATTTGTCCGGTCAGGAGTTGATCCATCATTTTA
CCAAGGCTCACGGCTCAGGTCTTGGCACACCCTCACATTCCCGCGACGAT
CTCCTCCAAGTGAACGACATTGCCAATTTCTTTTCCTGCGTGAGGCTTTG
CTAACGCTGACTGCATCCAAAGAGTCGAATGATGGCGATGATTTCAAGCA
GGAATCAAGTGCAAGGATGTCGGGTCGAGGTGTATCATCGTATTTTCTCA
CTCACAGCACGCTCGCCCCGCCGCACGCCTCGTTGCATCCTCCTTTGCTT
CTCGACGACGAGCGTCAAGCCGCCATAGTGAGCAAGCTGGCAAAAGAAGG
ATATCTCAAGCAAGCTGTCAAGCTTTTGTCCAATTTAAAGGCTCCATCTC
CCCTCCTTGTGCGAACCCTTTTGATGGCATGTGTAAATGCGGAGAGCTTA
CCCTTGGCCCTTGCTGTGGTGAAAATGCCGCACGTGCATCCCTCCGTGCA
GCAATACACCTTAGTCATCCAAATTTGTGCTCGGCAGGAGAGATGGTTTG
AGGCCGTGCGCCTTCTGCGCGACATGCGGACCCGAGGGGCACCGCCCGAC
CTGGTCGCTTACACCGCCGTGATGGATTGTTGCGCCAAGGCGGGCCAGTG
GGAGGCAGCCCTGACGCTCATCCCTGAAATGAAGGAAGCGGGTGTTCGGC
CTGATCGTATCACGTATAACACGGCCATTGATGCATGCGCGAAGGGGGGG
CAATGGCAGAGAGCTTTGGAATTTTTGCGTGGGATGGAGGAACCTAATTT
GATCAGCTACAACAGTGCGTTGGATTCTTGCGCTAAGACAGGCCGATGGA
AGGAGGCAGTAGGGCTGTTGGAGGAAATGCGGCAGGCAGGCAGGAGGAAA
GACGGTAGGGGGAGCACGGTCAGCGACCAGACGCAAGAAGTCGGCGCCAA
CCAGGGCAACACCACCAACACCATCCCCGGCAATCGAGGTAGCAAGCCGT
CCATCCGGCCCAACATTATCTCCTACAACACCGCAATAGAGGCCTGCGCT
AAAAGGGGCCGCTTCGAAGAAGCCCTGGCCATCCTGAGATCCATGCAGGT
CCCCGACACGGAGAAGGCGGGGGGGCATGTGCCTCTCCCCAGCGCGAGTA
AGAAGCGCAACGGAGCCTCCCATCACCGCCGCCACCAACGTCTTGTGCCA
GAACCGGACCTGGTCACGTACCATTCCGCGATCAAAGCATGTGGACATGC
TGGGCAGTGGGAACATGCCTTAAGCCTCCTTGCCGAGGTGCGTGCCGCTC
GATGGATTGAGCTGGAGCCCTCCACCTATAATGCTGCCATCGCGGCTTGC
GCCAAATCTGGTCGATTCAACGAGGCGCTGGACTTGTTGAAGGAATGTGG
AGATGCCAGCAATGTCGTGACTTACAACTCAGCCATGCAGGCTTGCTCCT
CGGGTGGGCGGCCGGACCTCGCCTTCCAGCTGTTGCAGGTGATGAAGGCC
AATGGAGTGGAGCCCGACGTGGTAAGTTACACTACCGTCATGCAACGTTC
CTCGGTCGACGTAGCTACAAGTGTCCTCAATCGTATGCGTGCAGCGGGCG
TGAGCGTGGGGGTTATGACCTACAACGCGCTTTTGAATGCCTGTGCTCGG
GAGGGCGATTGGCGGACGAGCCTCGCGATGCTGGAGGAGATGGATCATCA
GTCTGTGGCCCCCAACGTCGTGACTTACACCCTGGCCATGGAAGCGTGTG
GCCGAGGGGGGCAATGGCAAGCGGCACTGGAGGTATTGAACGAGATGACC
GTGCGTGGCGTCCCGTTGGACTCGAAGGCTTGCCAGACGGCCATCGACGT
GTGCGCCAAGGTCCAGGACTGGAACAAGGCACTGAGTCTCCTCAGGGACG
TGAGTGCGCAGGGCAGAGATGGAATAGGAGACCAGGGCAGCGGCAAAGGG
GGTACGAAGGAATTGTACGAGAAAGCCATGGCTGCGTTCGGGCGGGCGGG
GGAATGGGAGAAAGTCTTGTGGCTGCTTGAAGGAATGGATCGTCCTGATC
AGAAAGTGACCAACCTGGCAATGCGAGCATGTGCTCAGGCGGGAAGATGG
GAGGAAGCTGTCGGCCTTCTGCAGAATATGACGAGCAAGGGCATTGCTCC
AGACCAATGGAGCTACAACACGGCCATCCATGCCTGTGCACAGGCCGGAA
ATGCCGAAAAAGCCTTGAAACTGTTGAAGGAAATGGGCCAAGAAGGCGTC
GTTCCTGACGTGGTAAGCTATACGACTGCCATGGATGCATGTGCCTCGGT
AGGAGACGTGGAAACAAGTCTCCGGCTTTTGGAAGAGATGGTGAAGAAGG
GTGTCCACCCCAACCATCGGAGCTTCAATGCCATTATGAGTGCGCATGGG
AATGCAGGCCAGGCCACCGAAGCCATTGCTGTGCTGGGTCTGATGACTGA
GCATGGGCTGACCCCGGACGTGAAGAGCTACACTCTGGCCATGGACATAT
GTCTGCGTCAAGGCCTGTGGCAAGTTGCTCTCAAAATCGTGGAACGCATG
CATGCAACGCGGGTGCGCTTTGATGCGATTTCTTACGGCAAGGCTATCCA
CGCGGCCCATTTGGGCGAACAATGGGAGGTCGCGGTGGGGTTTTTGGATG
AAATGGTGGAAAGTGGTTGGCTTCCGAGTCATAAAAGCTATACCCTAGTG
GTCGAGGCATGCCGGCGAGCGGGAGAGTCGAGGCTGGCCGAAGAGGTAAG
TAGACGCTGGGCGCGTGATAAAGAAAGCTTGGCGCGAGCGAATCGTCGGC
GTGGGGGAAAAGGATTGGCAGACACTCGGCGACGCGATAACCGAGGAAAG
TCTAATTCTGAGGGACGAAAACATGGGACAAGTCCGATTGAAAATCAGCC
CGAAAGCAGCCGTGGAAACAAGGATAGCGCGCGAGTGGACACAACGAGAG
GCTCTTCTTCTGCCACAGTGAGCATCACCAACCATGTGAGCCATCCACCA
CCATCCTCGGGCCTGGGTCCGCAATTTCCGTTTCAAACGAAACGATGACA
TGAATCGAGATGCGCTGGCTTGGCAAAGGGATGCATGATATCTCAGAGGG
GTAAAGTACAAACATAGATAACCGAAAATCGTAGAAGATGACAATTTTAT
CGACGAAAACTTTCACGGCAACTGGAGGTAATAAGCTATAAAATGGCAAA
AAATCGAAAGATAAGTGAAAAACCGTTTGTGTACGATTTAAGCTGGTGGA
GATCAGAGAAATGTGTGGTCATGCGACAGGAATTCAACATGCTGGTTTGT
TCTCGCTAATTAACATAAATGAAGAATTCTGGCCGCTCAGATTTTC

protein sequence of rna1594

>rna1594-protein ID=rna1594-protein|Name=rna1594|organism=Nannochloropsis gaditana|type=polypeptide|length=491bp
MAGLNTTELEPGRKTKRSIRLRNERGGPPLADAATEGQPALKGNSTRSVH
TEKSATHLKVETAVEKEKYFVGGKTTPNASGEEGKKVGVVKKEETEEDSK
VTGAVDGYMPRRSRDKALGSSLVESLSSKKIKLEAESKRKPSACPDKLIH
DADEVLKIKALLDKWTGPGTSIKITASEISPYPQQRRPTPFEALYVRDLL
AQLHGEPERDVLEENCSGQGTLLEKRARSVLDSLVRTILSQNTTDALSKR
AFENLKVRYPTYKQVLAAAPGAVEETIKFAGLSDIKVGRIRAILETVLEE
HPEKCPEGEPSLEFLRALPTAGIKEYLSKFKGVGPKTIACVLLFTIGHDD
FAVDTHVWHIAKKLGWVPGAASREDAYKHLNNRVPDAIKYALHVLLVLHG
KKCESCCKGRTQLAPDGPCPLGKLQKMREELVKAEAAAMEAAAARVGLAH
VKKEEESVTQNTARQKSINKGKGGARAAVVKKEIVVKEEWA

mRNA from alignment at CM002457.1:1019493..1021191+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1594 ID=rna1594|Name=rna1594|organism=Nannochloropsis gaditana|type=mRNA|length=1699bp|location=Sequence derived from alignment at CM002457.1:1019493..1021191+ (Nannochloropsis gaditana)
CGTCAGGACATCAATCGAGGCGTTGGAAAATGGCAGGATTGAATACCACA
GAGCTAGAGCCTGGTCGGAAGACGAAGCGAAGCATCCGCTtaagaaatga
aagaggggggCCGCCTCTTGCTGACGCTGCGACTGAAGGGCAGCCGGCAC
TCAAGGGAAATTCGACAAGAAGCGTCCACACTGAGAAATCAGCGACACAC
TTGAAAGTAGAGACTGctgtggaaaaagagaaataCTTCGTTGGCGGAAA
AACGACGCCCAATGCCtcaggggaagaaggcaagaaaGTAGGGGttgtga
agaaggaggagacggaggaagacagcAAGGTCACGGGTGCAGTCGACGGC
TACATGCCACGGCGTTCGCGAGACAAGGCCTTGGGTTCTTCTCTTGTTGA
GTCTCTGTCTTCTAAAAAGATAAAATTGGAGGCGGAATCGAAGCGGAAGC
CCTCGGCATGTCCCGATAAGTTGATCCACGACGCGGACGAGGTTCTCAAA
ATCAAGGCCTTACTCGATAAATGGACAGGACCAGGCACCTCCATCAAAAT
CACAGCCAGTGAGATCAGTCCATACCCGCAACAACGACGTCCGACTCCAT
TTGAAGCACTTTACGTGCGCGACCTGCTGGCACAGCTCCACGGCGAACCA
GAGCGCGATGTGTTGGAGGAAAATTGCAGCGGCCAAGGCACGCTTTTAGA
AAAGCGGGCACGCTCTGTCCTCGATTCTCTTGTCCGCACGATCCTGAGTC
AAAACACCACGGACGCTTTGAGTAAGCGTGCTTTCGAAAATTTGAAGGTA
CGTTACCCGACCTACAAGCAAGTGTTGGCTGCCGCACCCGGCGCAGTAGA
GGAGACGATCAAATTTGCGGGGCTGTCGGATATCAAAGTCGGCCGAATCC
GCGCAATTTTAGAGACCGTGCTGGAAGAGCACCCCGAGAAGTGCCCCGAA
GGGGAGCCAAGTCTGGAGTTTCTCCGAGCGCTTCCGACGGCCGGGATCAA
GGAGTACCTCAGCAAGTTCAAGGGCGTCGGGCCCAAGACAATCGCCTGTG
TCCTGCTCTTCACGATCGGACACGACGACTTCGCCGTGGACACGCACGTC
TGGCATATTGCTAAGAAGCTAGGGTGGGTGCCGGGAGCCGCCTCCAGGGA
GGATGCCTACAAGCACCTGAACAACCGCGTGCCTGACGCTATCAAGTATG
CCCTACATGTTCTCTTGGTGCTTCACGGAAAGAAGTGCGAGTCTTGCTGC
AAAGGCCGCACGCAGCTCGCGCCcgacggcccatgtccctTGGGAAAGCT
acaaaaaatgcgcgaagaGCTGGTCAAAGCCGAAGCAGCGGCAATGGAGG
CTGCGGCCGCGCGGGTGGGACTGGCACacgtcaagaaggaggaagagagc
gtgACCCAGAATACGGCTAGGCAGAAGAGCATcaacaaggggaagggcgg
tgcCAGGGCCGCGGTCGTGAAAAAAGAGATTgtcgtcaaggaggagtggg
CGTGAGAATGAGTAGAACGAGGTGGCGTGAGAACCCTTGCATGCAACGCG
TGCGTACATATTACATGTGTACATGAGTAGGGATGATGAAACGAACAGTA
TACAAAGGTGTCATTTACAGATCGCAGTCCTTGGCGTGGCGGACGGAGCA
CATAGTTTCACCATTCACCATTGCAAAGAGCTCAAGTCGCGCCCGATCC

Coding sequence (CDS) from alignment at CM002457.1:1019493..1021191+

>rna1594 ID=rna1594|Name=rna1594|organism=Nannochloropsis gaditana|type=CDS|length=1476bp|location=Sequence derived from alignment at CM002457.1:1019493..1021191+ (Nannochloropsis gaditana)
ATGGCAGGATTGAATACCACAGAGCTAGAGCCTGGTCGGAAGACGAAGCG
AAGCATCCGCTtaagaaatgaaagaggggggCCGCCTCTTGCTGACGCTG
CGACTGAAGGGCAGCCGGCACTCAAGGGAAATTCGACAAGAAGCGTCCAC
ACTGAGAAATCAGCGACACACTTGAAAGTAGAGACTGctgtggaaaaaga
gaaataCTTCGTTGGCGGAAAAACGACGCCCAATGCCtcaggggaagaag
gcaagaaaGTAGGGGttgtgaagaaggaggagacggaggaagacagcAAG
GTCACGGGTGCAGTCGACGGCTACATGCCACGGCGTTCGCGAGACAAGGC
CTTGGGTTCTTCTCTTGTTGAGTCTCTGTCTTCTAAAAAGATAAAATTGG
AGGCGGAATCGAAGCGGAAGCCCTCGGCATGTCCCGATAAGTTGATCCAC
GACGCGGACGAGGTTCTCAAAATCAAGGCCTTACTCGATAAATGGACAGG
ACCAGGCACCTCCATCAAAATCACAGCCAGTGAGATCAGTCCATACCCGC
AACAACGACGTCCGACTCCATTTGAAGCACTTTACGTGCGCGACCTGCTG
GCACAGCTCCACGGCGAACCAGAGCGCGATGTGTTGGAGGAAAATTGCAG
CGGCCAAGGCACGCTTTTAGAAAAGCGGGCACGCTCTGTCCTCGATTCTC
TTGTCCGCACGATCCTGAGTCAAAACACCACGGACGCTTTGAGTAAGCGT
GCTTTCGAAAATTTGAAGGTACGTTACCCGACCTACAAGCAAGTGTTGGC
TGCCGCACCCGGCGCAGTAGAGGAGACGATCAAATTTGCGGGGCTGTCGG
ATATCAAAGTCGGCCGAATCCGCGCAATTTTAGAGACCGTGCTGGAAGAG
CACCCCGAGAAGTGCCCCGAAGGGGAGCCAAGTCTGGAGTTTCTCCGAGC
GCTTCCGACGGCCGGGATCAAGGAGTACCTCAGCAAGTTCAAGGGCGTCG
GGCCCAAGACAATCGCCTGTGTCCTGCTCTTCACGATCGGACACGACGAC
TTCGCCGTGGACACGCACGTCTGGCATATTGCTAAGAAGCTAGGGTGGGT
GCCGGGAGCCGCCTCCAGGGAGGATGCCTACAAGCACCTGAACAACCGCG
TGCCTGACGCTATCAAGTATGCCCTACATGTTCTCTTGGTGCTTCACGGA
AAGAAGTGCGAGTCTTGCTGCAAAGGCCGCACGCAGCTCGCGCCcgacgg
cccatgtccctTGGGAAAGCTacaaaaaatgcgcgaagaGCTGGTCAAAG
CCGAAGCAGCGGCAATGGAGGCTGCGGCCGCGCGGGTGGGACTGGCACac
gtcaagaaggaggaagagagcgtgACCCAGAATACGGCTAGGCAGAAGAG
CATcaacaaggggaagggcggtgcCAGGGCCGCGGTCGTGAAAAAAGAGA
TTgtcgtcaaggaggagtgggCGTGA

Synonyms

Publications