EWM29049.1, cds1590 (CDS) Nannochloropsis gaditana

Overview
NameEWM29049.1
Unique Namecds1590
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:1019522..1020997 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29049.1
ProductDNA glycosylase
Orig transcript idgnl|cribi|Naga_100024g41.4307.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:1019522..1020997 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006950response to stress
GO:0006259DNA metabolic process
GO:0006281DNA repair
GO:0006284base-excision repair
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
Vocabulary: INTERPRO
TermDefinition
IPR011257DNA_glycosylase
IPR023170HTH_base_excis_C
IPR003265HhH-GPD_domain
Homology
BLAST of EWM29049.1 vs. NCBI_GenBank
Match: gi|585111568|gb|EWM29049.1| (DNA glycosylase [Nannochloropsis gaditana])

HSP 1 Score: 996.497 bits (2575), Expect = 0.000e+0
Identity = 491/491 (100.00%), Postives = 491/491 (100.00%), Query Frame = 0
Query:    1 MAGLNTTELEPGRKTKRSIRLRNERGGPPLADAATEGQPALKGNSTRSVHTEKSATHLKVETAVEKEKYFVGGKTTPNASGEEGKKVGVVKKEETEEDSKVTGAVDGYMPRRSRDKALGSSLVESLSSKKIKLEAESKRKPSACPDKLIHDADEVLKIKALLDKWTGPGTSIKITASEISPYPQQRRPTPFEALYVRDLLAQLHGEPERDVLEENCSGQGTLLEKRARSVLDSLVRTILSQNTTDALSKRAFENLKVRYPTYKQVLAAAPGAVEETIKFAGLSDIKVGRIRAILETVLEEHPEKCPEGEPSLEFLRALPTAGIKEYLSKFKGVGPKTIACVLLFTIGHDDFAVDTHVWHIAKKLGWVPGAASREDAYKHLNNRVPDAIKYALHVLLVLHGKKCESCCKGRTQLAPDGPCPLGKLQKMREELVKAEAAAMEAAAARVGLAHVKKEEESVTQNTARQKSINKGKGGARAAVVKKEIVVKEEWA 491
            MAGLNTTELEPGRKTKRSIRLRNERGGPPLADAATEGQPALKGNSTRSVHTEKSATHLKVETAVEKEKYFVGGKTTPNASGEEGKKVGVVKKEETEEDSKVTGAVDGYMPRRSRDKALGSSLVESLSSKKIKLEAESKRKPSACPDKLIHDADEVLKIKALLDKWTGPGTSIKITASEISPYPQQRRPTPFEALYVRDLLAQLHGEPERDVLEENCSGQGTLLEKRARSVLDSLVRTILSQNTTDALSKRAFENLKVRYPTYKQVLAAAPGAVEETIKFAGLSDIKVGRIRAILETVLEEHPEKCPEGEPSLEFLRALPTAGIKEYLSKFKGVGPKTIACVLLFTIGHDDFAVDTHVWHIAKKLGWVPGAASREDAYKHLNNRVPDAIKYALHVLLVLHGKKCESCCKGRTQLAPDGPCPLGKLQKMREELVKAEAAAMEAAAARVGLAHVKKEEESVTQNTARQKSINKGKGGARAAVVKKEIVVKEEWA
Sbjct:    1 MAGLNTTELEPGRKTKRSIRLRNERGGPPLADAATEGQPALKGNSTRSVHTEKSATHLKVETAVEKEKYFVGGKTTPNASGEEGKKVGVVKKEETEEDSKVTGAVDGYMPRRSRDKALGSSLVESLSSKKIKLEAESKRKPSACPDKLIHDADEVLKIKALLDKWTGPGTSIKITASEISPYPQQRRPTPFEALYVRDLLAQLHGEPERDVLEENCSGQGTLLEKRARSVLDSLVRTILSQNTTDALSKRAFENLKVRYPTYKQVLAAAPGAVEETIKFAGLSDIKVGRIRAILETVLEEHPEKCPEGEPSLEFLRALPTAGIKEYLSKFKGVGPKTIACVLLFTIGHDDFAVDTHVWHIAKKLGWVPGAASREDAYKHLNNRVPDAIKYALHVLLVLHGKKCESCCKGRTQLAPDGPCPLGKLQKMREELVKAEAAAMEAAAARVGLAHVKKEEESVTQNTARQKSINKGKGGARAAVVKKEIVVKEEWA 491          
BLAST of EWM29049.1 vs. NCBI_GenBank
Match: gi|167997017|ref|XP_001751215.1| (predicted protein [Physcomitrella patens] >gi|162697196|gb|EDQ83532.1| predicted protein [Physcomitrella patens])

HSP 1 Score: 236.884 bits (603), Expect = 2.737e-71
Identity = 123/252 (48.81%), Postives = 167/252 (66.27%), Query Frame = 0
Query:  171 SIKITASEISPYPQQRRPTPFEALYVRDLLAQLHGEPERDVLEENCSGQGTLLEKRARSVLDSLVRTILSQNTTDALSKRAFENLKVRYPTYKQVLAAAPGAVEETIKFAGLSDIKVGRIRAILETVLEEHPEKCPEGEPSLEFLRALPTAGIKEYLSKFKGVGPKTIACVLLFTIGHDDFAVDTHVWHIAKKLGWVPGAASREDAYKHLNNRVPDAIKYALHVLLVLHGKKCESCCK-GRTQLAPDGPCPL 421
            ++++  +  SPYP   RP P E   VR+ L+QLHG  E +  +   +G  ++     R+VLDSLV TILSQNTTD  S++AF +LK  +PT+++V AA P  VE+ I+  GL++ K  RI  IL+T+  E    C      LE++R++    IK  LS+FKGVGPKT+ACVL+F +  ++F VDTHV+ ++K LGWVP +A RE  Y H+N+RVPD +KY LH LLV HGK+C  C K GR Q APDGPCPL
Sbjct:   10 AVELAVTSGSPYPDFARPYPEECYEVRNRLSQLHGT-EDEHEDRTLTGCPSV----RRTVLDSLVGTILSQNTTDNNSRKAFASLKQAFPTWEEVHAADPKKVEDAIRCGGLAETKAKRIINILDTIFTERGSIC------LEYVRSMNVDQIKAELSRFKGVGPKTVACVLMFHLEQNEFPVDTHVFRLSKMLGWVPASADREKTYLHMNSRVPDEVKYDLHCLLVTHGKRCPRCAKGGRAQTAPDGPCPL 250          
BLAST of EWM29049.1 vs. NCBI_GenBank
Match: gi|1150696843|ref|XP_020259384.1| (putative DNA glycosylase At3g47830 isoform X1 [Asparagus officinalis])

HSP 1 Score: 230.335 bits (586), Expect = 2.035e-68
Identity = 118/244 (48.36%), Postives = 152/244 (62.30%), Query Frame = 0
Query:  181 PYPQQRRPTPFEALYVRDLLAQLHGEPERDVLEENCSGQGTLLEKRARSVLDSLVRTILSQNTTDALSKRAFENLKVRYPTYKQVLAAAPGAVEETIKFAGLSDIKVGRIRAILETVLEEHPEKCPEGEPSLEFLRALPTAGIKEYLSKFKGVGPKTIACVLLFTIGHDDFAVDTHVWHIAKKLGWVPGAASREDAYKHLNNRVPDAIKYALHVLLVLHGKKCESCCKGRTQLAPDG---PCPL 421
            PYP    P+P +   VRD L QLHG P++           T     A SVLD L+ T+LSQNTTDA S RAF++LK  +PT++QVL A P ++E  I+  GL+  K  RI++ILE V ++  E C      LE+LR LP   +K  LS+FKG+GPKT+ACVL+F +  +DF VDTHV+ IAK LGW+P  A RE AY HLN R+PD +K+ L+ LLV HGK CE C   R  +   G    CPL
Sbjct:   45 PYPDHPNPSPEQCRSVRDDLLQLHGIPQQFAAAYRQRSSATTANAEAISVLDGLISTLLSQNTTDANSSRAFQSLKSSFPTWQQVLDADPKSLEGAIRCGGLAATKAARIKSILEAVRDKRGEFC------LEYLRGLPVDEVKAQLSRFKGIGPKTVACVLMFQLQKEDFPVDTHVFRIAKALGWIPMKADREKAYLHLNKRIPDELKFDLNCLLVTHGKLCERCVSKRGIIQTGGLRTSCPL 282          
BLAST of EWM29049.1 vs. NCBI_GenBank
Match: gi|586670390|ref|XP_006836744.1| (putative DNA glycosylase At3g47830 isoform X2 [Amborella trichopoda] >gi|548839304|gb|ERM99597.1| hypothetical protein AMTR_s00088p00146000 [Amborella trichopoda])

HSP 1 Score: 230.335 bits (586), Expect = 2.225e-68
Identity = 129/274 (47.08%), Postives = 162/274 (59.12%), Query Frame = 0
Query:  168 PGTSIKITASEISPYPQQRRPTPFEALYVRDLLAQLHGEPE------------RDVLEENCSGQGTLLEKRAR------SVLDSLVRTILSQNTTDALSKRAFENLKVRYPTYKQVLAAAPGAVEETIKFAGLSDIKVGRIRAILETVLEEHPEKCPEGEPSLEFLRALPTAGIKEYLSKFKGVGPKTIACVLLFTIGHDDFAVDTHVWHIAKKLGWVPGAASREDAYKHLNNRVPDAIKYALHVLLVLHGKKCESCCKG-RTQLAPDGPCPLG 422
            P +    +A+  SPYP  +RPTP E L VRD L  LHG PE             D  EE         E R        SVLD LV  ILSQNTTD  S+RAFE+LK+ +PT++ V AA   +V  TIK  GL++ K   I+ IL  +LE+      +G+  L++LR +P   IK  L  FKGVGPKT+ACVL+F +  DDF VDTHV+ I K +GWVP  A+RE AY HLN+++PD +K+ L+ LLV HGK CE C KG R Q  P G CPL 
Sbjct:   34 PNSETTTSANPRSPYPNFQRPTPQECLIVRDALISLHGFPEEFAEFRRKEAVVNDSFEEKQQKLDDEGEVRIAPLIQGGSVLDGLVSVILSQNTTDVNSRRAFESLKLAFPTWEDVHAAESKSVVNTIKCGGLAETKASCIKNILSALLEQ------KGKICLDYLREMPIDKIKAELRHFKGVGPKTVACVLMFYLQKDDFPVDTHVFRIVKAIGWVPSEANREKAYLHLNSQIPDDLKFDLNCLLVTHGKHCEKCTKGHRAQRTPLGSCPLS 301          
BLAST of EWM29049.1 vs. NCBI_GenBank
Match: gi|1150696847|ref|XP_020259387.1| (putative DNA glycosylase At3g47830 isoform X3 [Asparagus officinalis])

HSP 1 Score: 228.409 bits (581), Expect = 5.047e-68
Identity = 114/231 (49.35%), Postives = 147/231 (63.64%), Query Frame = 0
Query:  181 PYPQQRRPTPFEALYVRDLLAQLHGEPERDVLEENCSGQGTLLEKRARSVLDSLVRTILSQNTTDALSKRAFENLKVRYPTYKQVLAAAPGAVEETIKFAGLSDIKVGRIRAILETVLEEHPEKCPEGEPSLEFLRALPTAGIKEYLSKFKGVGPKTIACVLLFTIGHDDFAVDTHVWHIAKKLGWVPGAASREDAYKHLNNRVPDAIKYALHVLLVLHGKKCESCCKGRT 411
            PYP    P+P +   VRD L QLHG P++           T     A SVLD L+ T+LSQNTTDA S RAF++LK  +PT++QVL A P ++E  I+  GL+  K  RI++ILE V ++  E C      LE+LR LP   +K  LS+FKG+GPKT+ACVL+F +  +DF VDTHV+ IAK LGW+P  A RE AY HLN R+PD +K+ L+ LLV HGK CE C   R 
Sbjct:   45 PYPDHPNPSPEQCRSVRDDLLQLHGIPQQFAAAYRQRSSATTANAEAISVLDGLISTLLSQNTTDANSSRAFQSLKSSFPTWQQVLDADPKSLEGAIRCGGLAATKAARIKSILEAVRDKRGEFC------LEYLRGLPVDEVKAQLSRFKGIGPKTVACVLMFQLQKEDFPVDTHVFRIAKALGWIPMKADREKAYLHLNKRIPDELKFDLNCLLVTHGKLCERCVSKRV 269          
BLAST of EWM29049.1 vs. NCBI_GenBank
Match: gi|1150696845|ref|XP_020259386.1| (putative DNA glycosylase At3g47830 isoform X2 [Asparagus officinalis])

HSP 1 Score: 227.639 bits (579), Expect = 1.360e-67
Identity = 114/230 (49.57%), Postives = 147/230 (63.91%), Query Frame = 0
Query:  181 PYPQQRRPTPFEALYVRDLLAQLHGEPERDVLEENCSGQGTLLEKRARSVLDSLVRTILSQNTTDALSKRAFENLKVRYPTYKQVLAAAPGAVEETIKFAGLSDIKVGRIRAILETVLEEHPEKCPEGEPSLEFLRALPTAGIKEYLSKFKGVGPKTIACVLLFTIGHDDFAVDTHVWHIAKKLGWVPGAASREDAYKHLNNRVPDAIKYALHVLLVLHGKKCESCCKGR 410
            PYP    P+P +   VRD L QLHG P++           T     A SVLD L+ T+LSQNTTDA S RAF++LK  +PT++QVL A P ++E  I+  GL+  K  RI++ILE V ++  E C      LE+LR LP   +K  LS+FKG+GPKT+ACVL+F +  +DF VDTHV+ IAK LGW+P  A RE AY HLN R+PD +K+ L+ LLV HGK CE C   R
Sbjct:   45 PYPDHPNPSPEQCRSVRDDLLQLHGIPQQFAAAYRQRSSATTANAEAISVLDGLISTLLSQNTTDANSSRAFQSLKSSFPTWQQVLDADPKSLEGAIRCGGLAATKAARIKSILEAVRDKRGEFC------LEYLRGLPVDEVKAQLSRFKGIGPKTVACVLMFQLQKEDFPVDTHVFRIAKALGWIPMKADREKAYLHLNKRIPDELKFDLNCLLVTHGKLCERCVSKR 268          
BLAST of EWM29049.1 vs. NCBI_GenBank
Match: gi|873227862|emb|CEM17483.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 229.18 bits (583), Expect = 5.419e-67
Identity = 127/273 (46.52%), Postives = 168/273 (61.54%), Query Frame = 0
Query:  153 DEVLKIKALLDKWTGPGTSIKITASEISPYPQQRRPTPFEALYVRDLLAQLHGEPERDVLEENCSGQGTLLEKRARSVLDSLVRTILSQNTTDALSKRAFENLKVRYPTYKQVLAAAPGAVEETIKFAGLSDIKVGRIRAILETVLEEHPEKCPEGEPSLEFLRALPTAGIKEYLSKFKGVGPKTIACVLLFTIGHDDFAVDTHVWHIAKKLGWVPGAASREDAYKHLNNRVPDAIKYALHVLLVLHGKKCESCCK-GRTQLAPDGPCPLGKL 424
            DE   + A  D+ +G     ++ A+E  PYP  RRP+  E   V   L  LHG              G  ++ R  SV+D LVR +LSQNTTD LSK+ F++LK  +PT++ VL A    VE TI+  GL+  KV RI+AIL++V++        GEPSLE LR +P   +K+ L ++ GVGPKT+ACV++F +G  +F VDTHV HIA++L WVP +A+R  AY+HLN RVPD IK++LHVLLV HGK C  C K GR Q    G CPL  L
Sbjct:   67 DETEAVSADEDEGSG-----QLVAAE--PYPNLRRPSADECYAVGRALRDLHG--------------GDRVKGRDCSVMDMLVRVMLSQNTTDKLSKQTFQSLKAAFPTWRSVLDAPAADVEATIQKGGLAHTKVKRIQAILQSVVD--GGHVVAGEPSLEHLRGVPDEQVKQALLRYNGVGPKTVACVMMFGLGRSEFPVDTHVLHIAQRLHWVPQSATRVQAYQHLNRRVPDDIKHSLHVLLVEHGKCCVPCAKNGRLQKESSGSCPLQPL 316          
BLAST of EWM29049.1 vs. NCBI_GenBank
Match: gi|873233314|emb|CEM03455.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 228.024 bits (580), Expect = 1.458e-66
Identity = 137/314 (43.63%), Postives = 180/314 (57.32%), Query Frame = 0
Query:  124 ESLSSKKIKLEAESKRKPSACPDKLIHDADEVLKI---KALLDKWTGPGTS--IKITASEIS-------PYPQQRRPTPFEALYVRDLLAQLHGEPERDVLEENCSGQGTLLEKRARSVLDSLVRTILSQNTTDALSKRAFENLKVRYPTYKQVLAAAPGAVEETIKFAGLSDIKVGRIRAILETVLEEHPEKCPEGEPSLEFLRALPTAGIKEYLSKFKGVGPKTIACVLLFTIGHDDFAVDTHVWHIAKKLGWVPGAASREDAYKHLNNRVPDAIKYALHVLLVLHGKKCESCCK-GRTQLAPDGPCPLGKL 424
            E   SKKI ++ E          K +   ++ +K    KAL+    G G    + ++A E S       PYP  RRP+  E   V   L  LHG              G  ++ R  SVLD LV  +LSQNTTD LSK+ F++LK  +PT++ VL A    VE TI+  GL+  KV RI+AIL++V++E       GEPSLE LR +    +K  L ++ GVGPKT+ACV++F +G  +F VDTHV HIA++L WVP AA+R  AY+HLN RVPD IK++LH+LLV HGK C SC K GR Q    G CPL  L
Sbjct:   16 EEQDSKKISVKREHDDSSGVHGHKRVRKHEKAVKSEDEKALVQVEEGAGQDEMVAVSADEGSGEMVAAEPYPNLRRPSADECYAVERALRDLHG--------------GDRVKGRDCSVLDMLVSVMLSQNTTDKLSKQTFQSLKAAFPTWRAVLDAPAADVEATIQKGGLAHTKVKRIQAILQSVVDE--GHVVSGEPSLEHLRGVADEQVKPALLRYNGVGPKTVACVMMFGLGRSEFPVDTHVLHIAQRLHWVPQAATRIQAYQHLNRRVPDDIKHSLHLLLVEHGKCCVSCAKNGRLQKESSGSCPLQPL 313          
BLAST of EWM29049.1 vs. NCBI_GenBank
Match: gi|971508418|dbj|GAQ89783.1| (hypothetical protein KFL_005620010 [Klebsormidium nitens])

HSP 1 Score: 228.409 bits (581), Expect = 4.983e-66
Identity = 113/194 (58.25%), Postives = 136/194 (70.10%), Query Frame = 0
Query:  229 SVLDSLVRTILSQNTTDALSKRAFENLKVRYPTYKQVLAAAPGAVEETIKFAGLSDIKVGRIRAILETVLEEHPEKCPEGEPSLEFLRALPTAGIKEYLSKFKGVGPKTIACVLLFTIGHDDFAVDTHVWHIAKKLGWVPGAASREDAYKHLNNRVPDAIKYALHVLLVLHGKKCESCCK-GRTQLAPDGPCPL 421
            SVLDSLVRTILSQNTTD  SKRAF +LK  +PT++ V AA PG +  +IK  GL++IK  RI  ILE +  ++      G   LE LR++    +K  LS+FKGVGPKT+ACVL+F +  ++F VDTHVW I+K+LGWVP  A RE  Y HLN RVPD +KY LH LLV HGKKC  C K GR Q APDGPCPL
Sbjct:  229 SVLDSLVRTILSQNTTDTNSKRAFASLKQAFPTWEDVRAAGPGPLAASIKSGGLAEIKARRILDILEHLASKY------GALELEHLRSMSDEQVKAELSQFKGVGPKTVACVLMFCLDRNEFPVDTHVWRISKRLGWVPQTADREATYLHLNQRVPDDVKYDLHCLLVGHGKKCPGCAKGGRPQKAPDGPCPL 416          
BLAST of EWM29049.1 vs. NCBI_GenBank
Match: gi|255074589|ref|XP_002500969.1| (predicted protein, partial [Micromonas commoda] >gi|226516232|gb|ACO62227.1| predicted protein, partial [Micromonas commoda])

HSP 1 Score: 220.705 bits (561), Expect = 7.786e-66
Identity = 115/222 (51.80%), Postives = 145/222 (65.32%), Query Frame = 0
Query:  180 SPYPQQRRPTPFEALYVRDLLAQLHGEPERDVLEENCSGQGTLLEKRARSVLDSLVRTILSQNTTDALSKRAFENLKVRYPTYKQVLAAAPGAVEETIKFAGLSDIKVGRIRAILETVLEEHPEKCPEGEPSLEFLRALPTAGIKEYLSKFKGVGPKTIACVLLFTIGHDDFAVDTHVWHIAKKLGWVPGAASREDAYKHLNNRVPDAIKYALHVLLVLHGK 401
            SP+P   RPT  E    RD LA+LH    +    +  +G   +     ++VLDSLV TILSQNTTD  S RAF  LK R+PT++QV  A P  VE+ I+  GL+++KV RI+ IL T+ EE       GE S+E+LR +    +K  LS+FKGVGPKT++CVL+F +   DF VDTHVW IAK LGW+P  A REDAY+HLN RVPD  K+ LHVLLV HGK
Sbjct:    1 SPFPNLARPTVDECWAARDALAKLHSSFFQQFETQQAAGGDAI--GPGKTVLDSLVGTILSQNTTDTNSHRAFAILKHRFPTWEQVRTAKPAKVEDAIRCGGLAEVKVSRIQVILNTLKEE------RGECSMEYLRDMSDDDVKAELSRFKGVGPKTVSCVLMFCLKRPDFPVDTHVWKIAKDLGWIPKGAGREDAYEHLNRRVPDDCKFDLHVLLVEHGK 214          
The following BLAST results are available for this feature:
BLAST of EWM29049.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111568|gb|EWM29049.1|0.000e+0100.00DNA glycosylase [Nannochloropsis gaditana][more]
gi|167997017|ref|XP_001751215.1|2.737e-7148.81predicted protein [Physcomitrella patens] >gi|1626... [more]
gi|1150696843|ref|XP_020259384.1|2.035e-6848.36putative DNA glycosylase At3g47830 isoform X1 [Asp... [more]
gi|586670390|ref|XP_006836744.1|2.225e-6847.08putative DNA glycosylase At3g47830 isoform X2 [Amb... [more]
gi|1150696847|ref|XP_020259387.1|5.047e-6849.35putative DNA glycosylase At3g47830 isoform X3 [Asp... [more]
gi|1150696845|ref|XP_020259386.1|1.360e-6749.57putative DNA glycosylase At3g47830 isoform X2 [Asp... [more]
gi|873227862|emb|CEM17483.1|5.419e-6746.52unnamed protein product [Vitrella brassicaformis C... [more]
gi|873233314|emb|CEM03455.1|1.458e-6643.63unnamed protein product [Vitrella brassicaformis C... [more]
gi|971508418|dbj|GAQ89783.1|4.983e-6658.25hypothetical protein KFL_005620010 [Klebsormidium ... [more]
gi|255074589|ref|XP_002500969.1|7.786e-6651.80predicted protein, partial [Micromonas commoda] >g... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1594rna1594Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications