EWM29049.1, cds1590 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29049.1 vs. NCBI_GenBank
Match: gi|585111568|gb|EWM29049.1| (DNA glycosylase [Nannochloropsis gaditana]) HSP 1 Score: 996.497 bits (2575), Expect = 0.000e+0 Identity = 491/491 (100.00%), Postives = 491/491 (100.00%), Query Frame = 0
Query: 1 MAGLNTTELEPGRKTKRSIRLRNERGGPPLADAATEGQPALKGNSTRSVHTEKSATHLKVETAVEKEKYFVGGKTTPNASGEEGKKVGVVKKEETEEDSKVTGAVDGYMPRRSRDKALGSSLVESLSSKKIKLEAESKRKPSACPDKLIHDADEVLKIKALLDKWTGPGTSIKITASEISPYPQQRRPTPFEALYVRDLLAQLHGEPERDVLEENCSGQGTLLEKRARSVLDSLVRTILSQNTTDALSKRAFENLKVRYPTYKQVLAAAPGAVEETIKFAGLSDIKVGRIRAILETVLEEHPEKCPEGEPSLEFLRALPTAGIKEYLSKFKGVGPKTIACVLLFTIGHDDFAVDTHVWHIAKKLGWVPGAASREDAYKHLNNRVPDAIKYALHVLLVLHGKKCESCCKGRTQLAPDGPCPLGKLQKMREELVKAEAAAMEAAAARVGLAHVKKEEESVTQNTARQKSINKGKGGARAAVVKKEIVVKEEWA 491
MAGLNTTELEPGRKTKRSIRLRNERGGPPLADAATEGQPALKGNSTRSVHTEKSATHLKVETAVEKEKYFVGGKTTPNASGEEGKKVGVVKKEETEEDSKVTGAVDGYMPRRSRDKALGSSLVESLSSKKIKLEAESKRKPSACPDKLIHDADEVLKIKALLDKWTGPGTSIKITASEISPYPQQRRPTPFEALYVRDLLAQLHGEPERDVLEENCSGQGTLLEKRARSVLDSLVRTILSQNTTDALSKRAFENLKVRYPTYKQVLAAAPGAVEETIKFAGLSDIKVGRIRAILETVLEEHPEKCPEGEPSLEFLRALPTAGIKEYLSKFKGVGPKTIACVLLFTIGHDDFAVDTHVWHIAKKLGWVPGAASREDAYKHLNNRVPDAIKYALHVLLVLHGKKCESCCKGRTQLAPDGPCPLGKLQKMREELVKAEAAAMEAAAARVGLAHVKKEEESVTQNTARQKSINKGKGGARAAVVKKEIVVKEEWA
Sbjct: 1 MAGLNTTELEPGRKTKRSIRLRNERGGPPLADAATEGQPALKGNSTRSVHTEKSATHLKVETAVEKEKYFVGGKTTPNASGEEGKKVGVVKKEETEEDSKVTGAVDGYMPRRSRDKALGSSLVESLSSKKIKLEAESKRKPSACPDKLIHDADEVLKIKALLDKWTGPGTSIKITASEISPYPQQRRPTPFEALYVRDLLAQLHGEPERDVLEENCSGQGTLLEKRARSVLDSLVRTILSQNTTDALSKRAFENLKVRYPTYKQVLAAAPGAVEETIKFAGLSDIKVGRIRAILETVLEEHPEKCPEGEPSLEFLRALPTAGIKEYLSKFKGVGPKTIACVLLFTIGHDDFAVDTHVWHIAKKLGWVPGAASREDAYKHLNNRVPDAIKYALHVLLVLHGKKCESCCKGRTQLAPDGPCPLGKLQKMREELVKAEAAAMEAAAARVGLAHVKKEEESVTQNTARQKSINKGKGGARAAVVKKEIVVKEEWA 491
BLAST of EWM29049.1 vs. NCBI_GenBank
Match: gi|167997017|ref|XP_001751215.1| (predicted protein [Physcomitrella patens] >gi|162697196|gb|EDQ83532.1| predicted protein [Physcomitrella patens]) HSP 1 Score: 236.884 bits (603), Expect = 2.737e-71 Identity = 123/252 (48.81%), Postives = 167/252 (66.27%), Query Frame = 0
Query: 171 SIKITASEISPYPQQRRPTPFEALYVRDLLAQLHGEPERDVLEENCSGQGTLLEKRARSVLDSLVRTILSQNTTDALSKRAFENLKVRYPTYKQVLAAAPGAVEETIKFAGLSDIKVGRIRAILETVLEEHPEKCPEGEPSLEFLRALPTAGIKEYLSKFKGVGPKTIACVLLFTIGHDDFAVDTHVWHIAKKLGWVPGAASREDAYKHLNNRVPDAIKYALHVLLVLHGKKCESCCK-GRTQLAPDGPCPL 421
++++ + SPYP RP P E VR+ L+QLHG E + + +G ++ R+VLDSLV TILSQNTTD S++AF +LK +PT+++V AA P VE+ I+ GL++ K RI IL+T+ E C LE++R++ IK LS+FKGVGPKT+ACVL+F + ++F VDTHV+ ++K LGWVP +A RE Y H+N+RVPD +KY LH LLV HGK+C C K GR Q APDGPCPL
Sbjct: 10 AVELAVTSGSPYPDFARPYPEECYEVRNRLSQLHGT-EDEHEDRTLTGCPSV----RRTVLDSLVGTILSQNTTDNNSRKAFASLKQAFPTWEEVHAADPKKVEDAIRCGGLAETKAKRIINILDTIFTERGSIC------LEYVRSMNVDQIKAELSRFKGVGPKTVACVLMFHLEQNEFPVDTHVFRLSKMLGWVPASADREKTYLHMNSRVPDEVKYDLHCLLVTHGKRCPRCAKGGRAQTAPDGPCPL 250
BLAST of EWM29049.1 vs. NCBI_GenBank
Match: gi|1150696843|ref|XP_020259384.1| (putative DNA glycosylase At3g47830 isoform X1 [Asparagus officinalis]) HSP 1 Score: 230.335 bits (586), Expect = 2.035e-68 Identity = 118/244 (48.36%), Postives = 152/244 (62.30%), Query Frame = 0
Query: 181 PYPQQRRPTPFEALYVRDLLAQLHGEPERDVLEENCSGQGTLLEKRARSVLDSLVRTILSQNTTDALSKRAFENLKVRYPTYKQVLAAAPGAVEETIKFAGLSDIKVGRIRAILETVLEEHPEKCPEGEPSLEFLRALPTAGIKEYLSKFKGVGPKTIACVLLFTIGHDDFAVDTHVWHIAKKLGWVPGAASREDAYKHLNNRVPDAIKYALHVLLVLHGKKCESCCKGRTQLAPDG---PCPL 421
PYP P+P + VRD L QLHG P++ T A SVLD L+ T+LSQNTTDA S RAF++LK +PT++QVL A P ++E I+ GL+ K RI++ILE V ++ E C LE+LR LP +K LS+FKG+GPKT+ACVL+F + +DF VDTHV+ IAK LGW+P A RE AY HLN R+PD +K+ L+ LLV HGK CE C R + G CPL
Sbjct: 45 PYPDHPNPSPEQCRSVRDDLLQLHGIPQQFAAAYRQRSSATTANAEAISVLDGLISTLLSQNTTDANSSRAFQSLKSSFPTWQQVLDADPKSLEGAIRCGGLAATKAARIKSILEAVRDKRGEFC------LEYLRGLPVDEVKAQLSRFKGIGPKTVACVLMFQLQKEDFPVDTHVFRIAKALGWIPMKADREKAYLHLNKRIPDELKFDLNCLLVTHGKLCERCVSKRGIIQTGGLRTSCPL 282
BLAST of EWM29049.1 vs. NCBI_GenBank
Match: gi|586670390|ref|XP_006836744.1| (putative DNA glycosylase At3g47830 isoform X2 [Amborella trichopoda] >gi|548839304|gb|ERM99597.1| hypothetical protein AMTR_s00088p00146000 [Amborella trichopoda]) HSP 1 Score: 230.335 bits (586), Expect = 2.225e-68 Identity = 129/274 (47.08%), Postives = 162/274 (59.12%), Query Frame = 0
Query: 168 PGTSIKITASEISPYPQQRRPTPFEALYVRDLLAQLHGEPE------------RDVLEENCSGQGTLLEKRAR------SVLDSLVRTILSQNTTDALSKRAFENLKVRYPTYKQVLAAAPGAVEETIKFAGLSDIKVGRIRAILETVLEEHPEKCPEGEPSLEFLRALPTAGIKEYLSKFKGVGPKTIACVLLFTIGHDDFAVDTHVWHIAKKLGWVPGAASREDAYKHLNNRVPDAIKYALHVLLVLHGKKCESCCKG-RTQLAPDGPCPLG 422
P + +A+ SPYP +RPTP E L VRD L LHG PE D EE E R SVLD LV ILSQNTTD S+RAFE+LK+ +PT++ V AA +V TIK GL++ K I+ IL +LE+ +G+ L++LR +P IK L FKGVGPKT+ACVL+F + DDF VDTHV+ I K +GWVP A+RE AY HLN+++PD +K+ L+ LLV HGK CE C KG R Q P G CPL
Sbjct: 34 PNSETTTSANPRSPYPNFQRPTPQECLIVRDALISLHGFPEEFAEFRRKEAVVNDSFEEKQQKLDDEGEVRIAPLIQGGSVLDGLVSVILSQNTTDVNSRRAFESLKLAFPTWEDVHAAESKSVVNTIKCGGLAETKASCIKNILSALLEQ------KGKICLDYLREMPIDKIKAELRHFKGVGPKTVACVLMFYLQKDDFPVDTHVFRIVKAIGWVPSEANREKAYLHLNSQIPDDLKFDLNCLLVTHGKHCEKCTKGHRAQRTPLGSCPLS 301
BLAST of EWM29049.1 vs. NCBI_GenBank
Match: gi|1150696847|ref|XP_020259387.1| (putative DNA glycosylase At3g47830 isoform X3 [Asparagus officinalis]) HSP 1 Score: 228.409 bits (581), Expect = 5.047e-68 Identity = 114/231 (49.35%), Postives = 147/231 (63.64%), Query Frame = 0
Query: 181 PYPQQRRPTPFEALYVRDLLAQLHGEPERDVLEENCSGQGTLLEKRARSVLDSLVRTILSQNTTDALSKRAFENLKVRYPTYKQVLAAAPGAVEETIKFAGLSDIKVGRIRAILETVLEEHPEKCPEGEPSLEFLRALPTAGIKEYLSKFKGVGPKTIACVLLFTIGHDDFAVDTHVWHIAKKLGWVPGAASREDAYKHLNNRVPDAIKYALHVLLVLHGKKCESCCKGRT 411
PYP P+P + VRD L QLHG P++ T A SVLD L+ T+LSQNTTDA S RAF++LK +PT++QVL A P ++E I+ GL+ K RI++ILE V ++ E C LE+LR LP +K LS+FKG+GPKT+ACVL+F + +DF VDTHV+ IAK LGW+P A RE AY HLN R+PD +K+ L+ LLV HGK CE C R
Sbjct: 45 PYPDHPNPSPEQCRSVRDDLLQLHGIPQQFAAAYRQRSSATTANAEAISVLDGLISTLLSQNTTDANSSRAFQSLKSSFPTWQQVLDADPKSLEGAIRCGGLAATKAARIKSILEAVRDKRGEFC------LEYLRGLPVDEVKAQLSRFKGIGPKTVACVLMFQLQKEDFPVDTHVFRIAKALGWIPMKADREKAYLHLNKRIPDELKFDLNCLLVTHGKLCERCVSKRV 269
BLAST of EWM29049.1 vs. NCBI_GenBank
Match: gi|1150696845|ref|XP_020259386.1| (putative DNA glycosylase At3g47830 isoform X2 [Asparagus officinalis]) HSP 1 Score: 227.639 bits (579), Expect = 1.360e-67 Identity = 114/230 (49.57%), Postives = 147/230 (63.91%), Query Frame = 0
Query: 181 PYPQQRRPTPFEALYVRDLLAQLHGEPERDVLEENCSGQGTLLEKRARSVLDSLVRTILSQNTTDALSKRAFENLKVRYPTYKQVLAAAPGAVEETIKFAGLSDIKVGRIRAILETVLEEHPEKCPEGEPSLEFLRALPTAGIKEYLSKFKGVGPKTIACVLLFTIGHDDFAVDTHVWHIAKKLGWVPGAASREDAYKHLNNRVPDAIKYALHVLLVLHGKKCESCCKGR 410
PYP P+P + VRD L QLHG P++ T A SVLD L+ T+LSQNTTDA S RAF++LK +PT++QVL A P ++E I+ GL+ K RI++ILE V ++ E C LE+LR LP +K LS+FKG+GPKT+ACVL+F + +DF VDTHV+ IAK LGW+P A RE AY HLN R+PD +K+ L+ LLV HGK CE C R
Sbjct: 45 PYPDHPNPSPEQCRSVRDDLLQLHGIPQQFAAAYRQRSSATTANAEAISVLDGLISTLLSQNTTDANSSRAFQSLKSSFPTWQQVLDADPKSLEGAIRCGGLAATKAARIKSILEAVRDKRGEFC------LEYLRGLPVDEVKAQLSRFKGIGPKTVACVLMFQLQKEDFPVDTHVFRIAKALGWIPMKADREKAYLHLNKRIPDELKFDLNCLLVTHGKLCERCVSKR 268
BLAST of EWM29049.1 vs. NCBI_GenBank
Match: gi|873227862|emb|CEM17483.1| (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 229.18 bits (583), Expect = 5.419e-67 Identity = 127/273 (46.52%), Postives = 168/273 (61.54%), Query Frame = 0
Query: 153 DEVLKIKALLDKWTGPGTSIKITASEISPYPQQRRPTPFEALYVRDLLAQLHGEPERDVLEENCSGQGTLLEKRARSVLDSLVRTILSQNTTDALSKRAFENLKVRYPTYKQVLAAAPGAVEETIKFAGLSDIKVGRIRAILETVLEEHPEKCPEGEPSLEFLRALPTAGIKEYLSKFKGVGPKTIACVLLFTIGHDDFAVDTHVWHIAKKLGWVPGAASREDAYKHLNNRVPDAIKYALHVLLVLHGKKCESCCK-GRTQLAPDGPCPLGKL 424
DE + A D+ +G ++ A+E PYP RRP+ E V L LHG G ++ R SV+D LVR +LSQNTTD LSK+ F++LK +PT++ VL A VE TI+ GL+ KV RI+AIL++V++ GEPSLE LR +P +K+ L ++ GVGPKT+ACV++F +G +F VDTHV HIA++L WVP +A+R AY+HLN RVPD IK++LHVLLV HGK C C K GR Q G CPL L
Sbjct: 67 DETEAVSADEDEGSG-----QLVAAE--PYPNLRRPSADECYAVGRALRDLHG--------------GDRVKGRDCSVMDMLVRVMLSQNTTDKLSKQTFQSLKAAFPTWRSVLDAPAADVEATIQKGGLAHTKVKRIQAILQSVVD--GGHVVAGEPSLEHLRGVPDEQVKQALLRYNGVGPKTVACVMMFGLGRSEFPVDTHVLHIAQRLHWVPQSATRVQAYQHLNRRVPDDIKHSLHVLLVEHGKCCVPCAKNGRLQKESSGSCPLQPL 316
BLAST of EWM29049.1 vs. NCBI_GenBank
Match: gi|873233314|emb|CEM03455.1| (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 228.024 bits (580), Expect = 1.458e-66 Identity = 137/314 (43.63%), Postives = 180/314 (57.32%), Query Frame = 0
Query: 124 ESLSSKKIKLEAESKRKPSACPDKLIHDADEVLKI---KALLDKWTGPGTS--IKITASEIS-------PYPQQRRPTPFEALYVRDLLAQLHGEPERDVLEENCSGQGTLLEKRARSVLDSLVRTILSQNTTDALSKRAFENLKVRYPTYKQVLAAAPGAVEETIKFAGLSDIKVGRIRAILETVLEEHPEKCPEGEPSLEFLRALPTAGIKEYLSKFKGVGPKTIACVLLFTIGHDDFAVDTHVWHIAKKLGWVPGAASREDAYKHLNNRVPDAIKYALHVLLVLHGKKCESCCK-GRTQLAPDGPCPLGKL 424
E SKKI ++ E K + ++ +K KAL+ G G + ++A E S PYP RRP+ E V L LHG G ++ R SVLD LV +LSQNTTD LSK+ F++LK +PT++ VL A VE TI+ GL+ KV RI+AIL++V++E GEPSLE LR + +K L ++ GVGPKT+ACV++F +G +F VDTHV HIA++L WVP AA+R AY+HLN RVPD IK++LH+LLV HGK C SC K GR Q G CPL L
Sbjct: 16 EEQDSKKISVKREHDDSSGVHGHKRVRKHEKAVKSEDEKALVQVEEGAGQDEMVAVSADEGSGEMVAAEPYPNLRRPSADECYAVERALRDLHG--------------GDRVKGRDCSVLDMLVSVMLSQNTTDKLSKQTFQSLKAAFPTWRAVLDAPAADVEATIQKGGLAHTKVKRIQAILQSVVDE--GHVVSGEPSLEHLRGVADEQVKPALLRYNGVGPKTVACVMMFGLGRSEFPVDTHVLHIAQRLHWVPQAATRIQAYQHLNRRVPDDIKHSLHLLLVEHGKCCVSCAKNGRLQKESSGSCPLQPL 313
BLAST of EWM29049.1 vs. NCBI_GenBank
Match: gi|971508418|dbj|GAQ89783.1| (hypothetical protein KFL_005620010 [Klebsormidium nitens]) HSP 1 Score: 228.409 bits (581), Expect = 4.983e-66 Identity = 113/194 (58.25%), Postives = 136/194 (70.10%), Query Frame = 0
Query: 229 SVLDSLVRTILSQNTTDALSKRAFENLKVRYPTYKQVLAAAPGAVEETIKFAGLSDIKVGRIRAILETVLEEHPEKCPEGEPSLEFLRALPTAGIKEYLSKFKGVGPKTIACVLLFTIGHDDFAVDTHVWHIAKKLGWVPGAASREDAYKHLNNRVPDAIKYALHVLLVLHGKKCESCCK-GRTQLAPDGPCPL 421
SVLDSLVRTILSQNTTD SKRAF +LK +PT++ V AA PG + +IK GL++IK RI ILE + ++ G LE LR++ +K LS+FKGVGPKT+ACVL+F + ++F VDTHVW I+K+LGWVP A RE Y HLN RVPD +KY LH LLV HGKKC C K GR Q APDGPCPL
Sbjct: 229 SVLDSLVRTILSQNTTDTNSKRAFASLKQAFPTWEDVRAAGPGPLAASIKSGGLAEIKARRILDILEHLASKY------GALELEHLRSMSDEQVKAELSQFKGVGPKTVACVLMFCLDRNEFPVDTHVWRISKRLGWVPQTADREATYLHLNQRVPDDVKYDLHCLLVGHGKKCPGCAKGGRPQKAPDGPCPL 416
BLAST of EWM29049.1 vs. NCBI_GenBank
Match: gi|255074589|ref|XP_002500969.1| (predicted protein, partial [Micromonas commoda] >gi|226516232|gb|ACO62227.1| predicted protein, partial [Micromonas commoda]) HSP 1 Score: 220.705 bits (561), Expect = 7.786e-66 Identity = 115/222 (51.80%), Postives = 145/222 (65.32%), Query Frame = 0
Query: 180 SPYPQQRRPTPFEALYVRDLLAQLHGEPERDVLEENCSGQGTLLEKRARSVLDSLVRTILSQNTTDALSKRAFENLKVRYPTYKQVLAAAPGAVEETIKFAGLSDIKVGRIRAILETVLEEHPEKCPEGEPSLEFLRALPTAGIKEYLSKFKGVGPKTIACVLLFTIGHDDFAVDTHVWHIAKKLGWVPGAASREDAYKHLNNRVPDAIKYALHVLLVLHGK 401
SP+P RPT E RD LA+LH + + +G + ++VLDSLV TILSQNTTD S RAF LK R+PT++QV A P VE+ I+ GL+++KV RI+ IL T+ EE GE S+E+LR + +K LS+FKGVGPKT++CVL+F + DF VDTHVW IAK LGW+P A REDAY+HLN RVPD K+ LHVLLV HGK
Sbjct: 1 SPFPNLARPTVDECWAARDALAKLHSSFFQQFETQQAAGGDAI--GPGKTVLDSLVGTILSQNTTDTNSHRAFAILKHRFPTWEQVRTAKPAKVEDAIRCGGLAEVKVSRIQVILNTLKEE------RGECSMEYLRDMSDDDVKAELSRFKGVGPKTVSCVLMFCLKRPDFPVDTHVWKIAKDLGWIPKGAGREDAYEHLNRRVPDDCKFDLHVLLVEHGK 214 The following BLAST results are available for this feature:
BLAST of EWM29049.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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