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Properties
| Property Name | Value |
|---|
| Product | wsc domain-containing protein |
| Orig transcript id | gnl|cribi|Naga_100024g43.4346.mrna |
| Orig protein id | gnl|cribi|Naga_100024g43.4346 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002457.1 | supercontig | CM002457.1:1013099..1015737 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna1592 ID=rna1592|Name=rna1592|organism=Nannochloropsis gaditana|type=mRNA|length=4328bp
TCACGGCGAAGCTGCCCGCAACGTCCTGGTAGTCTCGTGGCTATTTCTTG
ATGAACTCTATCTAATCACAACATTACGCCCATTCAGCTGTAGGTATGCC
GTAGTAGCTTTAATTCCCAACGCGTTCCACCTTCCACGAGGCAGCGCCTT
GATTTCTCGTACCATGATGCAGCTTTTTTTGCTCGCTATTTCCATACTCG
GCCTCGCCTCATCGTCCTCCTCTCCTAAAAAAGAAGTACTCGTCTTGGGA
GGCAACGGCTTTATGGGCGTGTACACAGTCATCGCTTTAGCTTTTTCTGA
TAGATATGCGGTTACCATTGCCAATCGCAATACTACCTACTTTGACTCTT
TAGAGCGGTTGGCCAGCGCAAATATAACCTCCCTGCATTGGGATCGGAGA
AGCGAACCGATCGAAGACGCATCGGAAGTTGTAGCTTTCTTTGAAGATCA
CCCTCATATTCATGCCATTGTTGATTTCTCGTGTTATTCAGGAGATTCAG
CGCGAAACGTGGCTACTTTTTTGATAAAAGAGGAAGTACGTGTGGGGTTG
TACGTTTACGTGTCCAGTGATTCTATATATGAGGTTTGCTCAGCCAAGCG
TGACCTTGAAAAACCTACCACGGAAGACGTTGACGATCATCGTCCGTCCG
GGCCTCGTTCTCAAGCGGAATGTAATGCTGCTGACACCTACGGCCACGGC
AAGCTCGAGGCTGAGGAGGTTCTTCGAGAGCTCCAGCCCGTCTCGACTTG
GGACTACATATTCTTACGCATTCCTGACGTTGTTGGTCCTCGAGACACGT
CTAATCGGTGGTGGTTTTATCAGATATTGATCGACCTCCAGATCTGGATC
CATGTGCCCATCCCATACGTTCGCGAGGATCGAGACGGACGTGAAATGAG
CTTGGTGTACGTCAAGGACGTGGCGCGGGCGATCGTCTCACTGATTTCAG
GTCATGACGGCGCATTTCTCCACAGGTGGGGCGCAAATGTGAGTGATCGG
GCGCTTACAGTCAGGAATGTAGCCATCAACGTGGCCGATCACAGGGCGCG
GACCTTTGTCCAGATCATGGAGGACATCGCCAAAGCCCTGGCCACGTCTC
GGTCTTCCCAGTGGCCCACCTCATCCTCTTCGACAATGCCCTCTCCATTG
GTGTTTGCGCTAAATTCCACCACTGACTTTCCAAGCGTGAAGAGAGGGCC
TATCTCCACCACGCGGGCACGCACCCTCTTGGGATGGGAGCCAACGCCCT
GGGACGAGGTCGTGCTCGAGACCGTCGAGTTTTTCCAGTCAAGAATCCTC
TGGAAGGACGCTCGGTACGCCAAGGAGCTGCAAGGAGTCTTGCAAATGGT
GTGTCAGCAAGTAGCAAAGTACATTGACGAGAGGACTTTCCGCGACTTGT
TACTGAAAGTGTACGGGCTGAATGCTTCGGAAATGACTCTGACGTGCGCA
GGCTGCGCCAGTGACGTCATCGTGGACGAAGAACCGTGGAGTTCGCAGAT
AGAGTTATGATCAACATCTACGATCGGATGAAGCAGTATAGAACTGCGAT
GCCAAAACTCCCTTTAATTGTACACGTCATGAACTTGCCTAGGGCCCATA
GCCGAAGCCAAACTGCCCATTTCTTGTCACGTCCCGGATGCGATCTCCCT
GGCTCTGTTCCGGCAGAGGAAGTGGCCACCCGTCTCCTGGAATGTCATTG
ACTGTAATGATAATCTCAGCCTCGTAAGGAAACTCGTACGTCCCAAAGAC
GAAGAAAAACAGGTCTCGAAAACTTGTAAGGTCGCCCAGGGAATGATGAT
CCCCGATTTGCGTCCCGCCCGTCGTAATTGTGAAACCTCCTCGAGCGGTA
AAAAGTGCGCGCCATCTGTACCGTAAATTTTCGGAGCTTAGCCAAAATTG
GATGGTGTCAGTTGTCCGAGGAGCCACTGGGACGGAAAGCTGCCAGTTAC
GAGTCTCAACGTACGATTTTACAACGAGGATCTCGTAAAAATTGTTGTAC
GCCACAGAAAAAGCATTTTGAAACTCCTTTAGCTCACTTATCGAGAGCGT
CAAATCCGAATCTCGGCGCAGATCAGACCCCTCGCGTTGTTTGAACTTCT
TATGGCTAGAATGCTTTTCTTGCCAGTCCTGTTTGCTCTGCCGTTTAGCC
GGTGGTGGGACTCGAAAAAGCGCAGATTGGGCGGGGTTTGCATTGACGCG
ATGCGTTACTACGTCACTTATCGTGTAGCCCCAATTGGCCCGAAACTGAC
GAGACAACGTAAGTCCTTGTCCGTAAGCAAATGTGCACGTAGCCGTCTCG
GTAGGCGATTGATTCTCACAGCGAACGCGCCCGTTTGGCAGAGGCACACG
TGGAGTTGCAAATGTGCTCTGGTCGAAGAACAACAACGCTTCCTGCTCCA
AATAAACAAGATCATCGGCTCCCAAGCTGGCCATGGGTCGTCGCCGACAT
TGAAATGATTCCGAACGAGAGGTTTGGTCGTATATGGCAATAGAGCACTC
CTTTACGCCAGGCTGTTCCAAGTCCCGACTTCTAGCAACAATGCTCAAGC
GAAGATATCGCCATGCAATTGAACGGATAGGACGGGAGGTGTAAAAACAG
GCGATGTCATCTACCGCAAAGACACTGTCCACCCACGGAGATGGATTCTG
GGGTGGTGTCAAGACACTTGGCTCGGATATCGAAGCGCTTTCATCGCGTC
GGTAAAATTGACCCTTAAATGGGTGAGTCTGAAGGCTGAGGTCGACCATG
GGAGGCAAGAAGCGACATATCAGTCCCCCGCTTTCTTCATCGTAGAATAA
GCCTGCTCCATGCGGCGTGAGAAGCGCCACTGCCCCAGTATCCCCGTGCA
TTACCAAAGTCCATAAGCACCAAGCACGATCGCGGTCACCTGACAAGTAC
AAGTGGTTTTGGTCATCGACACATAAATATTGGTTTGAATTGACGTTCTT
CAGAAAAATATCGAAGCAGTCGTGACACCAAGGTCCATTGTTCGTCCTCG
TAAGGTCGAATGGCCGGGCAAGAGGCTGCGCGGGGCTTCTTGCACACGTA
GCAATTCGCGCGTTCTTCATCGTCACATGGCTTCGTCACCCATGATCCAT
CTCGAGCCATTTTGGTGCATGCAAAGCTATCCAAGACCATCGACGGCTCA
CTCGTCACAGAAGGTTCAATCACCATCGATGGGTTGTCAACCGGTTCGTC
GTGTTCGGGGACTAGCCTGGCATTCGGCAGTGACGAAGGATGACGCCAGT
TTTCATAGTAAGACCAATCGTATTCTTCCCCATTCAGCATGCTATTCAAT
CCTATGTACCCCGGAAGGAAGCCATAATTGAATGTCATGCTGTCTTGAAT
TTGCGCGAGCACCCAATCGTTCTCCTCCTTTGAATCAATGACTACCAAAC
GGCCGCCCCAAGAGCCGCACATTTCTTGCGCCCCCGCCCATGACACGTTG
TACACAACTTGCCTTTTGTAGCAAGAACAACCGAAGTGTAGGCTGAAAGT
ATTATCGTCGGATATATCATGATATGGGCCGGGCCCTTCCTCGTGACTTC
TTGTCGGTGAAGGACAAGAACACGATGTATCATTTGCTCCAACCTCACAG
AGCACGACGCGCGTTTTGGCCGTAAAACAAGATGGCAGCACCAAATCCCA
GGTACCATCTTCCGCCATCTCAAAGCATTGTTGCTTTGGAATATTACTTT
GATCTGAAATCAAAGTCGACGTCATGCTCGTACTAATTGATCTTGTAGAC
CACTTTCCAGGAGTATCAGCGAGACTATTCATACCAGCTACGTTCCAATA
TGCATCCCAAGCCCAGGATTCTGATTCATCTCCATTACTTCCCACCAAGG
CAGTCCTATTGCCTTGCGTTATAAGGGGGCGAGACGATTTTCGCCGGTGA
CATCCAATGTATCCACCCCTTCGGCCAAATAAGGCATGGACAAATGTGTT
CTCTGCCATGGACTTTATCGAACCCAAATGTCCGCCTAGAGCCTGACAGT
GCGCTCGGGCATCCCACCAAGAGGCATTGCGGCTGCGGTGACGAAGGTAG
CATGAGTTTTCAAAGGGTGTCCATCCCCTAGGGCAGCCCCGCTTCGACAG
CCAGCCTTTTTTTTTGCAAGCAAAGAATATGACTTCTTTTGGCGCTTGAT
AGCAGTCAACGGCGAGCCAATCACCGGACTCATCCATCCATCCACAATCC
TTAAGAATTCGTTGATACATTCCTAGACTTTGAATATACCCGGTTGCTTT
AGCGATACTCCCAAAGAAACCCACGACAGGGTGGTGCCAGCGTGATGCTG
GGATCCATAACTCTTCTGTCAGAAAACC back to topprotein sequence of rna1592 >rna1592-protein ID=rna1592-protein|Name=rna1592|organism=Nannochloropsis gaditana|type=polypeptide|length=791bp
MKVGKLAFLLCLLIFWYFPRPFTSVETPETHDVNGAMNLDMKDERRPPSA
KLAIGGKDEQVEGCFNNFIAKFAVSLAQNNFSNLRCQAICTERGYALAAT
GGGSQSICWCGNDYPGLPHEVDTFRCDRPCSLDKKTCHLFTCCGDRNGSL
FTISWNGEVNPVKHLLGRLSEEYRSSTIFRQNIINDYLLSDNRSSFQLCA
SDKLPENPPLYLSVGNGCPVGWCKRDGWCYKQHWADPSTYDEAQDKCQLE
GGELVNVRSSVQNAFVLSLYAGCLGWLHIESYYEGATLHIDQNFGEISHL
QLKPDGSWIALPGYDSDRRVACFACQKACTPPFPALRPHEADEWDIEISA
YPSSTYAWCTDCADSYLKNVNTHLYLCVDDQYHLYLSMQPESSWCIWTIK
IDPDTGAITFLSHHNAILTYQAERNELTCRSLPSMYHVSRSFVSRNHLMF
DGSFLNAPDGLAIFNPSSLPLSIKEHYLRIAVHSLNRRSKSAFIAPRGLQ
ECSMAVWDMSPQSDTFMCRPLVVDNADIGVLGSAATISPLVFKQKALHVY
DQSSYVTAREPLPNGRVTCLNQNPTETVSCVLAYGRAIILIRRFRTNFGI
LLFDTVADLFQVSSEQKQRFRFQTDLKTRRPEGNVVAGKERRRSRPNEVD
FLSEQGKLVQNALTGSFNTFYQFLFFKELVDVRTWQLGINVAPLTALTIQ
LWMTTQYLKYRWRAVFQPRGGFTLTLFGRRLSGQKGATFSLGDLVVSNDI
LYSMYGSYEEPVEVALTMTDSEHIELSYLGLPLHPWSDNEM back to topmRNA from alignment at CM002457.1:1013099..1015737+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna1592 ID=rna1592|Name=rna1592|organism=Nannochloropsis gaditana|type=mRNA|length=2639bp|location=Sequence derived from alignment at CM002457.1:1013099..1015737+ (Nannochloropsis gaditana)
AAGATAATCCCATCGAACTACCACACTAGCAGCTCGATTCTTCAACGAAT
GCTTTTTATCAAAGATAGAACTTCCCGCTCTTACACCAGTAGCACCTTTT
ATGCTATAATCACAGGTAGTGTTACGCAAAGAAAGCCTGACAAACTCCTG
TGATATCATCACGCTGGGATGATCAACAGCACTTCCCTCTGCTGCTGCGA
GCTCGTCCGCACCACGTACCGTACTCAAAGTCTAGCGAATGAAAGTAGGG
AAATTAGCCTTTTTGCTCTGCCTCTTAATTTTTTGGTATTTTCCTCGGCC
TTTCACCTCTGTCGAGACACCCGAGACGCATGACGTAAACGGTGCTATGA
ATCTTGACATGAAAGACGAgcgacgccctccttcagcaaAACTCGCCATT
GGCGGCAAAGATGAGCAGGTGGAAGGATGCTTCAACAATTTTATTGCGAA
ATTCGCTGTCTCACTGGCACAGAATAATTTTAGCAACCTACGATGTCAAG
CCATTTGCACTGAGCGCGGGTACGCGTTAGCAGCAACGGGTGGAGGATCA
CAAAGCATATGCTGGTGTGGAAATGACTACCCAGGTTTGCCACACGAAGT
AGACACATTTCGTTGTGATCGTCCCTGTAGTCTAGACAAGAAAACATGCC
ATTTATTTACATGTTGTGGAGACCGGAACGGATCGCTCTTCACCATCAGT
TGGAATGGAGAGGTAAACCCAGTAAAACATCTTCTGGGACGTTTGTCGGA
AGAATACAGGAGCAGCACTATTTTTCGTCAGAATATAATCAATGACTATT
TACTATCTGACAACAGATCTTCTTTTCAACTTTGCGCGTCGGATAAGCTA
CCTGAGAATCCACCGCTGTACCTCAGCGTCGGCAACGGTTGCCCTGTAGG
ATGGTGCAAGCGAGACGGTTGGTGCTACAAACAGCATTGGGCCGACCCAT
CAACCTACGACGAAGCTCAAGACAAATGCCagcttgagggaggggagttg
GTGAATGTCAGATCGAGTGTACAGAACGCCTTTGTCTTGAGTCTTTATGC
TGGCTGTCTAGGGTGGCTGCATATCGAATCCTATTATGAAGGGGCCACTT
TGCACATCGATCAAAACTTTGGAGAAATATCACACCTACAATTGAAACCT
GACGGCTCTTGGATCGCACTTCCGGGCTATGACAGCGATAGGCGGGTCGC
TTGTTTCGCATGTCAAAAGGCCTGTACgccacccttccccgcgctGCGTC
CCCACGAGGCTGACGAGTGGGACATCGAGATCTCGGCGTATCCATCAAGC
ACCTACGCTTGGTGTACGGATTGTGCTGACAGCTACTTGAAAAACGTAAA
TACACATTTATATCTCTGTGTGGACGATCAGTATCATCTATATTTATCGA
TGCAGCCAGAATCCTCATGGTGCATTTGGACCATAAAAATAGACCCCGAC
ACCGGCGCTATaacctttctttctcatcaCAATGCAATTTTGACGTACCA
AGCTGAAAGAAATGAGCTCACATGTCGTTCGTTGCCGTCGATGTATCATG
TATCACGATCATTTGTGTCGCGGAACCATCTCATGTTCGATGGGTCATTC
CTGAACGCTCCGGACGGCCTGGCTATCTTCAATCCTAGCAGCCTGCCGCT
CTCGATTAAAGAGCACTACCTACGTATTGCTGTCCACAGCCTCAATCGAC
GATCGAAGTCTGCATTCATCGCGCCAAGGGGTTTACAGGAATGTTCCATG
GCTGTCTGGGATATGAGCCCACAAAGCGATACATTTATGTGCAGACCACT
AGTTGTAGACAACGCCGACATCGGAGTCCTTGGTAGTGCAGCCACTATCT
CGCCGCTTGTATTCAAGCAAAAAGCTTTACATGTGTATGATCAGAGTTCC
TACGTCACAGCACGTGAGCCTTTGCCGAACGGACGGGTAACCTGCTTGAA
TCAAAACCCCACTGAGACTGTCAGCTGTGTTTTGGCCTACGGACGGGCAA
TAATCCTTATCCGGCGATTTCGGACGAATTTTGGGATTCTTTTATTTGAT
ACCGTTGCAGATCTTTTTCAAGTTTCGTCTGAACAAAAGCAAAGGTTCCG
GTTTCAGACGGACCTTAAGACTAGAAGACCGGAAGGAAATGTTGTCGcag
gcaaagaaagaagacgTTCCCGACCCAATGAAGTCGATTTCTTGAGTGAG
CAAGGGAAGCTTGTCCAGAACGCGCTGACCGGCTCGTTTAATACATTCTA
CCAATTTCTATTTTTCAAGGAATTGGTGGATGTCCGGACATGGCAACTTG
GCATCAACGTGGCGCCCCTTACAGCTCTCACTATCCAATTATGGATGACA
ACCCAATATTTAAAATATCGGTGGCGGGCCGTATTTCAACCGCGGGGCGG
ATTTACCCTTACATTGTTCGGTCGGAGGCTGAGCGGCCAGAAAGGAGCAA
CATTTTCCTTGGGAGACTTGGTTGTCTCCAATGATATTCTGTATTCAATG
TACGGGTCCTATGAGGAGCCTGTAGAGGTAGCTTTAACTATGACTGACAG
CGAGCATATTGAGCTATCGTACCTTGGTTTGCCTTTGCATCCTTGGAGCG
ACAACGAGATGTGAAAGAAACAAAAGTGAGCTCCATAGC back to topCoding sequence (CDS) from alignment at CM002457.1:1013099..1015737+ >rna1592 ID=rna1592|Name=rna1592|organism=Nannochloropsis gaditana|type=CDS|length=2376bp|location=Sequence derived from alignment at CM002457.1:1013099..1015737+ (Nannochloropsis gaditana)
ATGAAAGTAGGGAAATTAGCCTTTTTGCTCTGCCTCTTAATTTTTTGGTA
TTTTCCTCGGCCTTTCACCTCTGTCGAGACACCCGAGACGCATGACGTAA
ACGGTGCTATGAATCTTGACATGAAAGACGAgcgacgccctccttcagca
aAACTCGCCATTGGCGGCAAAGATGAGCAGGTGGAAGGATGCTTCAACAA
TTTTATTGCGAAATTCGCTGTCTCACTGGCACAGAATAATTTTAGCAACC
TACGATGTCAAGCCATTTGCACTGAGCGCGGGTACGCGTTAGCAGCAACG
GGTGGAGGATCACAAAGCATATGCTGGTGTGGAAATGACTACCCAGGTTT
GCCACACGAAGTAGACACATTTCGTTGTGATCGTCCCTGTAGTCTAGACA
AGAAAACATGCCATTTATTTACATGTTGTGGAGACCGGAACGGATCGCTC
TTCACCATCAGTTGGAATGGAGAGGTAAACCCAGTAAAACATCTTCTGGG
ACGTTTGTCGGAAGAATACAGGAGCAGCACTATTTTTCGTCAGAATATAA
TCAATGACTATTTACTATCTGACAACAGATCTTCTTTTCAACTTTGCGCG
TCGGATAAGCTACCTGAGAATCCACCGCTGTACCTCAGCGTCGGCAACGG
TTGCCCTGTAGGATGGTGCAAGCGAGACGGTTGGTGCTACAAACAGCATT
GGGCCGACCCATCAACCTACGACGAAGCTCAAGACAAATGCCagcttgag
ggaggggagttgGTGAATGTCAGATCGAGTGTACAGAACGCCTTTGTCTT
GAGTCTTTATGCTGGCTGTCTAGGGTGGCTGCATATCGAATCCTATTATG
AAGGGGCCACTTTGCACATCGATCAAAACTTTGGAGAAATATCACACCTA
CAATTGAAACCTGACGGCTCTTGGATCGCACTTCCGGGCTATGACAGCGA
TAGGCGGGTCGCTTGTTTCGCATGTCAAAAGGCCTGTACgccacccttcc
ccgcgctGCGTCCCCACGAGGCTGACGAGTGGGACATCGAGATCTCGGCG
TATCCATCAAGCACCTACGCTTGGTGTACGGATTGTGCTGACAGCTACTT
GAAAAACGTAAATACACATTTATATCTCTGTGTGGACGATCAGTATCATC
TATATTTATCGATGCAGCCAGAATCCTCATGGTGCATTTGGACCATAAAA
ATAGACCCCGACACCGGCGCTATaacctttctttctcatcaCAATGCAAT
TTTGACGTACCAAGCTGAAAGAAATGAGCTCACATGTCGTTCGTTGCCGT
CGATGTATCATGTATCACGATCATTTGTGTCGCGGAACCATCTCATGTTC
GATGGGTCATTCCTGAACGCTCCGGACGGCCTGGCTATCTTCAATCCTAG
CAGCCTGCCGCTCTCGATTAAAGAGCACTACCTACGTATTGCTGTCCACA
GCCTCAATCGACGATCGAAGTCTGCATTCATCGCGCCAAGGGGTTTACAG
GAATGTTCCATGGCTGTCTGGGATATGAGCCCACAAAGCGATACATTTAT
GTGCAGACCACTAGTTGTAGACAACGCCGACATCGGAGTCCTTGGTAGTG
CAGCCACTATCTCGCCGCTTGTATTCAAGCAAAAAGCTTTACATGTGTAT
GATCAGAGTTCCTACGTCACAGCACGTGAGCCTTTGCCGAACGGACGGGT
AACCTGCTTGAATCAAAACCCCACTGAGACTGTCAGCTGTGTTTTGGCCT
ACGGACGGGCAATAATCCTTATCCGGCGATTTCGGACGAATTTTGGGATT
CTTTTATTTGATACCGTTGCAGATCTTTTTCAAGTTTCGTCTGAACAAAA
GCAAAGGTTCCGGTTTCAGACGGACCTTAAGACTAGAAGACCGGAAGGAA
ATGTTGTCGcaggcaaagaaagaagacgTTCCCGACCCAATGAAGTCGAT
TTCTTGAGTGAGCAAGGGAAGCTTGTCCAGAACGCGCTGACCGGCTCGTT
TAATACATTCTACCAATTTCTATTTTTCAAGGAATTGGTGGATGTCCGGA
CATGGCAACTTGGCATCAACGTGGCGCCCCTTACAGCTCTCACTATCCAA
TTATGGATGACAACCCAATATTTAAAATATCGGTGGCGGGCCGTATTTCA
ACCGCGGGGCGGATTTACCCTTACATTGTTCGGTCGGAGGCTGAGCGGCC
AGAAAGGAGCAACATTTTCCTTGGGAGACTTGGTTGTCTCCAATGATATT
CTGTATTCAATGTACGGGTCCTATGAGGAGCCTGTAGAGGTAGCTTTAAC
TATGACTGACAGCGAGCATATTGAGCTATCGTACCTTGGTTTGCCTTTGC
ATCCTTGGAGCGACAACGAGATGTGA back to top
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