EWM29088.1, cds1588 (CDS) Nannochloropsis gaditana

Overview
NameEWM29088.1
Unique Namecds1588
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:1013337..1015712 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29088.1
Productwsc domain-containing protein
Orig transcript idgnl|cribi|Naga_100024g43.4346.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:1013337..1015712 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR016187C-type_lectin_fold
IPR002889WSC_carb-bd
IPR001304C-type_lectin
Homology
BLAST of EWM29088.1 vs. NCBI_GenBank
Match: gi|585111607|gb|EWM29088.1| (wsc domain-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 1654.8 bits (4284), Expect = 0.000e+0
Identity = 791/791 (100.00%), Postives = 791/791 (100.00%), Query Frame = 0
Query:    1 MKVGKLAFLLCLLIFWYFPRPFTSVETPETHDVNGAMNLDMKDERRPPSAKLAIGGKDEQVEGCFNNFIAKFAVSLAQNNFSNLRCQAICTERGYALAATGGGSQSICWCGNDYPGLPHEVDTFRCDRPCSLDKKTCHLFTCCGDRNGSLFTISWNGEVNPVKHLLGRLSEEYRSSTIFRQNIINDYLLSDNRSSFQLCASDKLPENPPLYLSVGNGCPVGWCKRDGWCYKQHWADPSTYDEAQDKCQLEGGELVNVRSSVQNAFVLSLYAGCLGWLHIESYYEGATLHIDQNFGEISHLQLKPDGSWIALPGYDSDRRVACFACQKACTPPFPALRPHEADEWDIEISAYPSSTYAWCTDCADSYLKNVNTHLYLCVDDQYHLYLSMQPESSWCIWTIKIDPDTGAITFLSHHNAILTYQAERNELTCRSLPSMYHVSRSFVSRNHLMFDGSFLNAPDGLAIFNPSSLPLSIKEHYLRIAVHSLNRRSKSAFIAPRGLQECSMAVWDMSPQSDTFMCRPLVVDNADIGVLGSAATISPLVFKQKALHVYDQSSYVTAREPLPNGRVTCLNQNPTETVSCVLAYGRAIILIRRFRTNFGILLFDTVADLFQVSSEQKQRFRFQTDLKTRRPEGNVVAGKERRRSRPNEVDFLSEQGKLVQNALTGSFNTFYQFLFFKELVDVRTWQLGINVAPLTALTIQLWMTTQYLKYRWRAVFQPRGGFTLTLFGRRLSGQKGATFSLGDLVVSNDILYSMYGSYEEPVEVALTMTDSEHIELSYLGLPLHPWSDNEM 791
            MKVGKLAFLLCLLIFWYFPRPFTSVETPETHDVNGAMNLDMKDERRPPSAKLAIGGKDEQVEGCFNNFIAKFAVSLAQNNFSNLRCQAICTERGYALAATGGGSQSICWCGNDYPGLPHEVDTFRCDRPCSLDKKTCHLFTCCGDRNGSLFTISWNGEVNPVKHLLGRLSEEYRSSTIFRQNIINDYLLSDNRSSFQLCASDKLPENPPLYLSVGNGCPVGWCKRDGWCYKQHWADPSTYDEAQDKCQLEGGELVNVRSSVQNAFVLSLYAGCLGWLHIESYYEGATLHIDQNFGEISHLQLKPDGSWIALPGYDSDRRVACFACQKACTPPFPALRPHEADEWDIEISAYPSSTYAWCTDCADSYLKNVNTHLYLCVDDQYHLYLSMQPESSWCIWTIKIDPDTGAITFLSHHNAILTYQAERNELTCRSLPSMYHVSRSFVSRNHLMFDGSFLNAPDGLAIFNPSSLPLSIKEHYLRIAVHSLNRRSKSAFIAPRGLQECSMAVWDMSPQSDTFMCRPLVVDNADIGVLGSAATISPLVFKQKALHVYDQSSYVTAREPLPNGRVTCLNQNPTETVSCVLAYGRAIILIRRFRTNFGILLFDTVADLFQVSSEQKQRFRFQTDLKTRRPEGNVVAGKERRRSRPNEVDFLSEQGKLVQNALTGSFNTFYQFLFFKELVDVRTWQLGINVAPLTALTIQLWMTTQYLKYRWRAVFQPRGGFTLTLFGRRLSGQKGATFSLGDLVVSNDILYSMYGSYEEPVEVALTMTDSEHIELSYLGLPLHPWSDNEM
Sbjct:    1 MKVGKLAFLLCLLIFWYFPRPFTSVETPETHDVNGAMNLDMKDERRPPSAKLAIGGKDEQVEGCFNNFIAKFAVSLAQNNFSNLRCQAICTERGYALAATGGGSQSICWCGNDYPGLPHEVDTFRCDRPCSLDKKTCHLFTCCGDRNGSLFTISWNGEVNPVKHLLGRLSEEYRSSTIFRQNIINDYLLSDNRSSFQLCASDKLPENPPLYLSVGNGCPVGWCKRDGWCYKQHWADPSTYDEAQDKCQLEGGELVNVRSSVQNAFVLSLYAGCLGWLHIESYYEGATLHIDQNFGEISHLQLKPDGSWIALPGYDSDRRVACFACQKACTPPFPALRPHEADEWDIEISAYPSSTYAWCTDCADSYLKNVNTHLYLCVDDQYHLYLSMQPESSWCIWTIKIDPDTGAITFLSHHNAILTYQAERNELTCRSLPSMYHVSRSFVSRNHLMFDGSFLNAPDGLAIFNPSSLPLSIKEHYLRIAVHSLNRRSKSAFIAPRGLQECSMAVWDMSPQSDTFMCRPLVVDNADIGVLGSAATISPLVFKQKALHVYDQSSYVTAREPLPNGRVTCLNQNPTETVSCVLAYGRAIILIRRFRTNFGILLFDTVADLFQVSSEQKQRFRFQTDLKTRRPEGNVVAGKERRRSRPNEVDFLSEQGKLVQNALTGSFNTFYQFLFFKELVDVRTWQLGINVAPLTALTIQLWMTTQYLKYRWRAVFQPRGGFTLTLFGRRLSGQKGATFSLGDLVVSNDILYSMYGSYEEPVEVALTMTDSEHIELSYLGLPLHPWSDNEM 791          
BLAST of EWM29088.1 vs. NCBI_GenBank
Match: gi|585108919|gb|EWM26828.1| (macrophage mannose receptor 1 [Nannochloropsis gaditana])

HSP 1 Score: 132.88 bits (333), Expect = 4.664e-28
Identity = 81/247 (32.79%), Postives = 116/247 (46.96%), Query Frame = 0
Query:   47 PPSAKLAIGGKDEQVEGCFNNFIAKFAVS---LAQNNFSNLRCQAICTERGYALAATGGGSQSICWCGNDYPGLPHEVDTFRCDRPCSLDKKTCHLFTCCGDRNGSLFTISWNGEVNPVKHLLGRLSEEYRSSTIFRQNIINDYLLS---------DNRSSFQLCASDKLPENPPLYLSVGNGCPVGWCKRDGWCYKQHWADPSTYDEAQDKCQLEGGELVNVRSSVQNAFVLSLYAGCLGWLHIES 281
            PP+AK          EGCFN+F     +S     Q + +N+RC+A C   G++++AT   S   C CGN+YP + H V   +C +PCS D+  C    CCGD  G  FT+S+  E++    LL  L+ +YR      Q  +   L S         D   +    AS     +    +  GNGCP GW      CYK+     + +  AQ  CQ  GG L  +++  +N FV SL  G  GWL + +
Sbjct:   83 PPTAK---------TEGCFNDFFTLLQISYGGAGQESLNNIRCRARCAASGFSMSAT---SAQSCHCGNNYPSVFHRVRDTQCSQPCSPDRTVCEESGCCGDAKGKYFTVSFAREIDVTLQLLRTLTFDYRVQNKLFQQHVEGRLASAASLMVASFDGVEAMSSTASTNAQVDG--VIGFGNGCPTGWAVHKRACYKRVSGRLTDFSTAQATCQNMGGNLPMLKTVDENDFVRSLLNGQAGWLGMTA 315          

HSP 2 Score: 96.6709 bits (239), Expect = 8.544e-17
Identity = 77/317 (24.29%), Postives = 132/317 (41.64%), Query Frame = 0
Query:  463 IFNPSSL--PLSIKEHYLRIAVHSLNRRSKSAFIAPRGLQECSMAVWDMSPQSDTFMCRPLVVDNADIGVLGSAATISPLV-FKQKALHVYDQSSYVTAREPLPNGRVTCLNQNPTETVSCVLAYGRAIILIRRFRTNFGILLFDTVADLFQVSSEQKQRFRFQTDLKTRRPEGNVVAGKERRRSRPNEVDFLSEQGKLVQNALTGSFNTFYQFLFFKELVDVRTWQLGINVAPLTALTIQLWMTTQYLKYRWRAVFQPRGGFTLTLFGRRLS-GQKGATFSLGDLVVSNDILYSMYGSYEEP--VEVALTMTDSEH 773
            +F  S+L  PL+++   + +AV       +    +PR    C+M ++D++P SD++ C  +  D   +          PLV  +  A    D++S ++ R PL NGR  C N  P ETV+C +AYG  +   R     FG                Q   F FQ +  +    G    G                           ++   Y     +  ++ R W + + V+P +  T+Q W++T  + Y W+A+   +G F ++  G  LS GQ     SL  L    D+ +  +G++  P   E+ +T+ D E+
Sbjct:  997 VFMASTLIAPLALQNLQISVAVFR-----EDTMESPR---LCTMFIYDLTPNSDSYTCYQVQGDPTGL----------PLVEMEMAAWITQDKTSILSPRSPLENGRTRCENSAPAETVTCNVAYGEGLTFQRELDITFG----------------QYYAFFFQINQGSAAGSGGNFGGYYN---------------------FQAAYTNVYTSQVIRSYIETRNWAVVVPVSPQSLATVQFWISTVDINYVWQAILNAQGSFDISSMGLYLSTGQ-----SLTTLSYLEDLFFYTFGTFAYPSQAEIIITVDDVEN 1253          
BLAST of EWM29088.1 vs. NCBI_GenBank
Match: gi|585108885|gb|EWM26794.1| (low affinity immunoglobulin epsilon fc receptor [Nannochloropsis gaditana])

HSP 1 Score: 107.457 bits (267), Expect = 4.121e-20
Identity = 64/226 (28.32%), Postives = 113/226 (50.00%), Query Frame = 0
Query:   60 QVEGCFNNFIAKFAVSLAQNNFSNLRCQAICTERGYALAATGGGSQSICWCGNDYPGLPHEVDTFRCDRPCSLDKKTCHLFTCCGDRNGSLFTISWNGEVNPVKHLLGRLSEEYRSSTIFRQNIINDYLLSDNRSSFQLCASDKLPENPPLYLSVGNG----CPVGWCKRDGWCYKQHWADPSTYDEAQDKCQLEGGELVNVRSSVQNAFVLSLYAGCLGWLHIES 281
            + EGCF+ F    + +       N  CQA C  + ++++AT   S + C+CGN+YP    +V    CD PCS DK  C ++ CCG R+G+ FT+++ G+      LL +L+ +YR S    ++ I    L    +  Q+ +S+ L     +    G G    CP  + +  G CY + +    +Y +A+++CQ +G  L  + S  +N ++  +     GW+ + +
Sbjct:  145 KTEGCFSKFDFLLSQTYPAVEIDNRVCQAFCASQRFSVSAT---SLNTCYCGNNYPSAFFKVKDDICDNPCSPDKTYCFVYACCGSRDGTYFTVAFAGQ------LLRQLTYDYRMSNPRLRDHIK--TLMGASAPLQVMSSNGLSTGVVMSGGAGIGLQGSCPDHYSEFKGACYSRVYGKMMSYIQAKERCQEDGASLAVITSREENDYLTRMLFQRPGWIGLSN 359          
The following BLAST results are available for this feature:
BLAST of EWM29088.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|585111607|gb|EWM29088.1|0.000e+0100.00wsc domain-containing protein [Nannochloropsis gad... [more]
gi|585108919|gb|EWM26828.1|4.664e-2832.79macrophage mannose receptor 1 [Nannochloropsis gad... [more]
gi|585108885|gb|EWM26794.1|4.121e-2028.32low affinity immunoglobulin epsilon fc receptor [N... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1592rna1592Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications