EWM29088.1, cds1588 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29088.1 vs. NCBI_GenBank
Match: gi|585111607|gb|EWM29088.1| (wsc domain-containing protein [Nannochloropsis gaditana]) HSP 1 Score: 1654.8 bits (4284), Expect = 0.000e+0 Identity = 791/791 (100.00%), Postives = 791/791 (100.00%), Query Frame = 0
Query: 1 MKVGKLAFLLCLLIFWYFPRPFTSVETPETHDVNGAMNLDMKDERRPPSAKLAIGGKDEQVEGCFNNFIAKFAVSLAQNNFSNLRCQAICTERGYALAATGGGSQSICWCGNDYPGLPHEVDTFRCDRPCSLDKKTCHLFTCCGDRNGSLFTISWNGEVNPVKHLLGRLSEEYRSSTIFRQNIINDYLLSDNRSSFQLCASDKLPENPPLYLSVGNGCPVGWCKRDGWCYKQHWADPSTYDEAQDKCQLEGGELVNVRSSVQNAFVLSLYAGCLGWLHIESYYEGATLHIDQNFGEISHLQLKPDGSWIALPGYDSDRRVACFACQKACTPPFPALRPHEADEWDIEISAYPSSTYAWCTDCADSYLKNVNTHLYLCVDDQYHLYLSMQPESSWCIWTIKIDPDTGAITFLSHHNAILTYQAERNELTCRSLPSMYHVSRSFVSRNHLMFDGSFLNAPDGLAIFNPSSLPLSIKEHYLRIAVHSLNRRSKSAFIAPRGLQECSMAVWDMSPQSDTFMCRPLVVDNADIGVLGSAATISPLVFKQKALHVYDQSSYVTAREPLPNGRVTCLNQNPTETVSCVLAYGRAIILIRRFRTNFGILLFDTVADLFQVSSEQKQRFRFQTDLKTRRPEGNVVAGKERRRSRPNEVDFLSEQGKLVQNALTGSFNTFYQFLFFKELVDVRTWQLGINVAPLTALTIQLWMTTQYLKYRWRAVFQPRGGFTLTLFGRRLSGQKGATFSLGDLVVSNDILYSMYGSYEEPVEVALTMTDSEHIELSYLGLPLHPWSDNEM 791
MKVGKLAFLLCLLIFWYFPRPFTSVETPETHDVNGAMNLDMKDERRPPSAKLAIGGKDEQVEGCFNNFIAKFAVSLAQNNFSNLRCQAICTERGYALAATGGGSQSICWCGNDYPGLPHEVDTFRCDRPCSLDKKTCHLFTCCGDRNGSLFTISWNGEVNPVKHLLGRLSEEYRSSTIFRQNIINDYLLSDNRSSFQLCASDKLPENPPLYLSVGNGCPVGWCKRDGWCYKQHWADPSTYDEAQDKCQLEGGELVNVRSSVQNAFVLSLYAGCLGWLHIESYYEGATLHIDQNFGEISHLQLKPDGSWIALPGYDSDRRVACFACQKACTPPFPALRPHEADEWDIEISAYPSSTYAWCTDCADSYLKNVNTHLYLCVDDQYHLYLSMQPESSWCIWTIKIDPDTGAITFLSHHNAILTYQAERNELTCRSLPSMYHVSRSFVSRNHLMFDGSFLNAPDGLAIFNPSSLPLSIKEHYLRIAVHSLNRRSKSAFIAPRGLQECSMAVWDMSPQSDTFMCRPLVVDNADIGVLGSAATISPLVFKQKALHVYDQSSYVTAREPLPNGRVTCLNQNPTETVSCVLAYGRAIILIRRFRTNFGILLFDTVADLFQVSSEQKQRFRFQTDLKTRRPEGNVVAGKERRRSRPNEVDFLSEQGKLVQNALTGSFNTFYQFLFFKELVDVRTWQLGINVAPLTALTIQLWMTTQYLKYRWRAVFQPRGGFTLTLFGRRLSGQKGATFSLGDLVVSNDILYSMYGSYEEPVEVALTMTDSEHIELSYLGLPLHPWSDNEM
Sbjct: 1 MKVGKLAFLLCLLIFWYFPRPFTSVETPETHDVNGAMNLDMKDERRPPSAKLAIGGKDEQVEGCFNNFIAKFAVSLAQNNFSNLRCQAICTERGYALAATGGGSQSICWCGNDYPGLPHEVDTFRCDRPCSLDKKTCHLFTCCGDRNGSLFTISWNGEVNPVKHLLGRLSEEYRSSTIFRQNIINDYLLSDNRSSFQLCASDKLPENPPLYLSVGNGCPVGWCKRDGWCYKQHWADPSTYDEAQDKCQLEGGELVNVRSSVQNAFVLSLYAGCLGWLHIESYYEGATLHIDQNFGEISHLQLKPDGSWIALPGYDSDRRVACFACQKACTPPFPALRPHEADEWDIEISAYPSSTYAWCTDCADSYLKNVNTHLYLCVDDQYHLYLSMQPESSWCIWTIKIDPDTGAITFLSHHNAILTYQAERNELTCRSLPSMYHVSRSFVSRNHLMFDGSFLNAPDGLAIFNPSSLPLSIKEHYLRIAVHSLNRRSKSAFIAPRGLQECSMAVWDMSPQSDTFMCRPLVVDNADIGVLGSAATISPLVFKQKALHVYDQSSYVTAREPLPNGRVTCLNQNPTETVSCVLAYGRAIILIRRFRTNFGILLFDTVADLFQVSSEQKQRFRFQTDLKTRRPEGNVVAGKERRRSRPNEVDFLSEQGKLVQNALTGSFNTFYQFLFFKELVDVRTWQLGINVAPLTALTIQLWMTTQYLKYRWRAVFQPRGGFTLTLFGRRLSGQKGATFSLGDLVVSNDILYSMYGSYEEPVEVALTMTDSEHIELSYLGLPLHPWSDNEM 791
BLAST of EWM29088.1 vs. NCBI_GenBank
Match: gi|585108919|gb|EWM26828.1| (macrophage mannose receptor 1 [Nannochloropsis gaditana]) HSP 1 Score: 132.88 bits (333), Expect = 4.664e-28 Identity = 81/247 (32.79%), Postives = 116/247 (46.96%), Query Frame = 0
Query: 47 PPSAKLAIGGKDEQVEGCFNNFIAKFAVS---LAQNNFSNLRCQAICTERGYALAATGGGSQSICWCGNDYPGLPHEVDTFRCDRPCSLDKKTCHLFTCCGDRNGSLFTISWNGEVNPVKHLLGRLSEEYRSSTIFRQNIINDYLLS---------DNRSSFQLCASDKLPENPPLYLSVGNGCPVGWCKRDGWCYKQHWADPSTYDEAQDKCQLEGGELVNVRSSVQNAFVLSLYAGCLGWLHIES 281
PP+AK EGCFN+F +S Q + +N+RC+A C G++++AT S C CGN+YP + H V +C +PCS D+ C CCGD G FT+S+ E++ LL L+ +YR Q + L S D + AS + + GNGCP GW CYK+ + + AQ CQ GG L +++ +N FV SL G GWL + +
Sbjct: 83 PPTAK---------TEGCFNDFFTLLQISYGGAGQESLNNIRCRARCAASGFSMSAT---SAQSCHCGNNYPSVFHRVRDTQCSQPCSPDRTVCEESGCCGDAKGKYFTVSFAREIDVTLQLLRTLTFDYRVQNKLFQQHVEGRLASAASLMVASFDGVEAMSSTASTNAQVDG--VIGFGNGCPTGWAVHKRACYKRVSGRLTDFSTAQATCQNMGGNLPMLKTVDENDFVRSLLNGQAGWLGMTA 315 HSP 2 Score: 96.6709 bits (239), Expect = 8.544e-17 Identity = 77/317 (24.29%), Postives = 132/317 (41.64%), Query Frame = 0
Query: 463 IFNPSSL--PLSIKEHYLRIAVHSLNRRSKSAFIAPRGLQECSMAVWDMSPQSDTFMCRPLVVDNADIGVLGSAATISPLV-FKQKALHVYDQSSYVTAREPLPNGRVTCLNQNPTETVSCVLAYGRAIILIRRFRTNFGILLFDTVADLFQVSSEQKQRFRFQTDLKTRRPEGNVVAGKERRRSRPNEVDFLSEQGKLVQNALTGSFNTFYQFLFFKELVDVRTWQLGINVAPLTALTIQLWMTTQYLKYRWRAVFQPRGGFTLTLFGRRLS-GQKGATFSLGDLVVSNDILYSMYGSYEEP--VEVALTMTDSEH 773
+F S+L PL+++ + +AV + +PR C+M ++D++P SD++ C + D + PLV + A D++S ++ R PL NGR C N P ETV+C +AYG + R FG Q F FQ + + G G ++ Y + ++ R W + + V+P + T+Q W++T + Y W+A+ +G F ++ G LS GQ SL L D+ + +G++ P E+ +T+ D E+
Sbjct: 997 VFMASTLIAPLALQNLQISVAVFR-----EDTMESPR---LCTMFIYDLTPNSDSYTCYQVQGDPTGL----------PLVEMEMAAWITQDKTSILSPRSPLENGRTRCENSAPAETVTCNVAYGEGLTFQRELDITFG----------------QYYAFFFQINQGSAAGSGGNFGGYYN---------------------FQAAYTNVYTSQVIRSYIETRNWAVVVPVSPQSLATVQFWISTVDINYVWQAILNAQGSFDISSMGLYLSTGQ-----SLTTLSYLEDLFFYTFGTFAYPSQAEIIITVDDVEN 1253
BLAST of EWM29088.1 vs. NCBI_GenBank
Match: gi|585108885|gb|EWM26794.1| (low affinity immunoglobulin epsilon fc receptor [Nannochloropsis gaditana]) HSP 1 Score: 107.457 bits (267), Expect = 4.121e-20 Identity = 64/226 (28.32%), Postives = 113/226 (50.00%), Query Frame = 0
Query: 60 QVEGCFNNFIAKFAVSLAQNNFSNLRCQAICTERGYALAATGGGSQSICWCGNDYPGLPHEVDTFRCDRPCSLDKKTCHLFTCCGDRNGSLFTISWNGEVNPVKHLLGRLSEEYRSSTIFRQNIINDYLLSDNRSSFQLCASDKLPENPPLYLSVGNG----CPVGWCKRDGWCYKQHWADPSTYDEAQDKCQLEGGELVNVRSSVQNAFVLSLYAGCLGWLHIES 281
+ EGCF+ F + + N CQA C + ++++AT S + C+CGN+YP +V CD PCS DK C ++ CCG R+G+ FT+++ G+ LL +L+ +YR S ++ I L + Q+ +S+ L + G G CP + + G CY + + +Y +A+++CQ +G L + S +N ++ + GW+ + +
Sbjct: 145 KTEGCFSKFDFLLSQTYPAVEIDNRVCQAFCASQRFSVSAT---SLNTCYCGNNYPSAFFKVKDDICDNPCSPDKTYCFVYACCGSRDGTYFTVAFAGQ------LLRQLTYDYRMSNPRLRDHIK--TLMGASAPLQVMSSNGLSTGVVMSGGAGIGLQGSCPDHYSEFKGACYSRVYGKMMSYIQAKERCQEDGASLAVITSREENDYLTRMLFQRPGWIGLSN 359 The following BLAST results are available for this feature:
BLAST of EWM29088.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 3
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|