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Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100024g48.4316.mrna |
| Orig protein id | gnl|cribi|Naga_100024g48.4316 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002457.1 | supercontig | CM002457.1:1004017..1005778 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna1588 ID=rna1588|Name=rna1588|organism=Nannochloropsis gaditana|type=mRNA|length=579bp
ATGGTCACGCTTATCGTGGCCTGTATCTGTAAATACTTCAAGGCCATGGA
TTCCAGACCAGCGGGGCCTAGGATCAGCATGTTTGAGACCTCTGCATCAC
CTAGCATTGACCCAGACCAAGACCTGTTCCCGCACTGTTTGGTGTGGTCA
CCTCTGCCTGTCTTGACATGGTTTTTGCCCTTCGTCGGGCACATGGGTAT
TGCGACAATGGATGGGGTAATGTGGGATTTTGCTGGACCCTACTCGATCG
GTAGACATAAACTTGCGTTCGGTCCTCCAACGCGCTATATTCAGTTGCAA
ATCCCTCGCGGCAGAGAAATTGAGTACGACGAGGCTGTGGCTTCAGCCAA
CGCCACTTATTCTCACCGCACTCATAATCTTCTGTGCGACAACTGCCACA
GTCATTGCGCGTGGGCGCTGAACACATTCAAATACAAAGGTGCACGTTGG
TGGAATATGGTGGTGCTATCTTTATATATGCTTGTGATGGGCAAGTGGGT
AAGTTTTCTGGCTGCAATCAAGACGTTGGGACCTGCCATGTTAGTCCTCG
TTATTGGATTGACTATTATATACGTGTAG back to topprotein sequence of rna1588 >rna1588-protein ID=rna1588-protein|Name=rna1588|organism=Nannochloropsis gaditana|type=polypeptide|length=390bp
MQSRKIALKVFASIFLVLFCMNALVLDMPISIFSETTQHTQLRATPCPAS
SLLEDILVVISYHWNVGKLVYLTSMLDLIQTYETKVDVLIVTNNDKALHK
FLAARGYIEKSNPTIQLWQAPTSNDSNKYSLLWVHRQAIEKAVERHPNYT
SIFYMEDDTHLSWPTVVSWALDTEVLEPLNFTRCNYRTEVDAETGDFNVL
DYPYFLSITSESVLDATRNTDFLRLQERLRKQPALDCGKHHDKTRWSVGV
HDRFISPTYPYQGMWMATRAQLARFMAHPYWKKKIASTATLPAGMGMGYP
ERTTVMNLLINVPEGFRSNCMVPFILSDQGDGILKPTLPSVARVEHMRNG
YSSEPGPLGKIHVHLAITGDVLLPRESEEMKAQEAGGNVS back to topmRNA from alignment at CM002457.1:1004017..1005778+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna1588 ID=rna1588|Name=rna1588|organism=Nannochloropsis gaditana|type=mRNA|length=1762bp|location=Sequence derived from alignment at CM002457.1:1004017..1005778+ (Nannochloropsis gaditana)
TAGCGAAGAGCAATCGGGTCCTTGTTGGTCTTATTCACTTCTTTGAGATA
TTTTTACTGATTGGATCCCTTCAGTGGCTTTTCCTGGCCGTATTAGAGGC
ATATTCAGATTTAGCGAAGCCGCATTTATGAAATATTCGACTATCCCCCA
CCCACCACATGCCCATTCCTTGTGCCCGTGAGCCACAGGGTCTATCAAGA
GTAACGGCGGTTAAAGCTTTCCTCGAGATGTTGAGATAGGTGACTTTTAA
TCCGATGAACTGCCTTTGGGACCTCTTGCAGTCGTGAATATGTGTTGAAC
GCTACACCAATAAATAAGCAAGGTAAAAGTATTAGTCTCATCCATTCTTT
AAGCATGAATTTTCTCCTGCTTCCATGCGTGAAAACGGTCGTCATCGAGG
TCTTGCTTTGGCTATAACCGATGAGTAATCATGCAATATACGTACAATTA
CATTTATTCGTTCAGCTGCAGGGGAGATAGGAATAAAAGCTGTGATGCAG
TCAAGAAAGATAGCATTGAAGGTCTTcgcttccattttcttggtACTCTT
CTGCATGAATGCCTTGGTCCTGGACATGCCTATTTCCATTTTTAGCGAAA
CGACACAGCATACCCAGCTCCGAGCAACACCATGTCCTGCCTCATCATTA
CTTGAAGATATCCTTGTAGTCATATCATATCATTGGAACGTTGGTAAACT
CGTGTACCTCACTTCCATGCTCGATCTTATTCAGACCTACGAGACTAAAG
TTGACGTCCTCATCGTTACAAATAATGATAAGGCTCTACATAAGTTTCTA
GCCGCAAGGGGATACATTGAAAAGAGCAATCCCACCATCCAACTATGGCA
AGCTCCCACGTCCAACGACTCGAATAAATACTCATTACTTTGGGTTCACA
GGCAGGCGATTGAAAAGGCTGTGGAAAGGCATCCCAATTATACGTCGATA
TTCTACATGGAAGACGACACGCACTTGTCCTGGCCGACTGTAGTTTCCTG
GGCATTAGATACAGAAGTCCTTGAGCCGTTGAACTTCACGCGCTGTAACT
ATCGAACAGAGGTGGATGCAGAGACGGGGGACTTCAACGTGTTGGATTAT
CCATATTTTTTAAGCATCACCAGCGAAAGTGTGCTGGACGCAACTCGAAA
TACCGATTTCTTACGTCTACAGGAACGGCTCAGAAAACAACCCGCGCTCG
ATTGTGGGAAGCATCACGACAAGACACGATGGTCTGTCGGCGTCCATGAT
CGGTTCATCTCACCGACATATCCATATCAAGGCATGTGGATGGCCACACG
CGCCCAGCTTGCCCGCTTCATGGCACATCCTTactggaagaaaaaaatcg
cTTCGACTGCCACATTGCCCGCAGGCATGGGGATGGGGTACCCCGAGCGC
ACTACGGTGATGAACTTGCTGATCAACGTGCCTGAAGGCTTTCGTTCCAA
CTGTATGGTGCCCTTTATCCTCAGCGATCAAGGTGATGGGATCCTGAAGC
CCACTCTGCCGTCGGTTGCCCGTGTTGAGCACATGCGAAATGGATATTCC
TCCGAGCCGGGCCCACTCGGGAAAATCCATGTGCATCTAGCGATCACAGG
Agatgtccttcttcctcgcgagagcgaggagatgaaagcgcaggaggcag
gaggaaatgtGTCATGAGGGAAAGCGCACAAAGGTGGAATGGAAATACTC
CTCGAAAGGAATTGTATAAAATAAATGTCGAGGGAAACATCATTTGATTT
GACCATGAACAC back to topCoding sequence (CDS) from alignment at CM002457.1:1004017..1005778+ >rna1588 ID=rna1588|Name=rna1588|organism=Nannochloropsis gaditana|type=CDS|length=1173bp|location=Sequence derived from alignment at CM002457.1:1004017..1005778+ (Nannochloropsis gaditana)
ATGCAGTCAAGAAAGATAGCATTGAAGGTCTTcgcttccattttcttggt
ACTCTTCTGCATGAATGCCTTGGTCCTGGACATGCCTATTTCCATTTTTA
GCGAAACGACACAGCATACCCAGCTCCGAGCAACACCATGTCCTGCCTCA
TCATTACTTGAAGATATCCTTGTAGTCATATCATATCATTGGAACGTTGG
TAAACTCGTGTACCTCACTTCCATGCTCGATCTTATTCAGACCTACGAGA
CTAAAGTTGACGTCCTCATCGTTACAAATAATGATAAGGCTCTACATAAG
TTTCTAGCCGCAAGGGGATACATTGAAAAGAGCAATCCCACCATCCAACT
ATGGCAAGCTCCCACGTCCAACGACTCGAATAAATACTCATTACTTTGGG
TTCACAGGCAGGCGATTGAAAAGGCTGTGGAAAGGCATCCCAATTATACG
TCGATATTCTACATGGAAGACGACACGCACTTGTCCTGGCCGACTGTAGT
TTCCTGGGCATTAGATACAGAAGTCCTTGAGCCGTTGAACTTCACGCGCT
GTAACTATCGAACAGAGGTGGATGCAGAGACGGGGGACTTCAACGTGTTG
GATTATCCATATTTTTTAAGCATCACCAGCGAAAGTGTGCTGGACGCAAC
TCGAAATACCGATTTCTTACGTCTACAGGAACGGCTCAGAAAACAACCCG
CGCTCGATTGTGGGAAGCATCACGACAAGACACGATGGTCTGTCGGCGTC
CATGATCGGTTCATCTCACCGACATATCCATATCAAGGCATGTGGATGGC
CACACGCGCCCAGCTTGCCCGCTTCATGGCACATCCTTactggaagaaaa
aaatcgcTTCGACTGCCACATTGCCCGCAGGCATGGGGATGGGGTACCCC
GAGCGCACTACGGTGATGAACTTGCTGATCAACGTGCCTGAAGGCTTTCG
TTCCAACTGTATGGTGCCCTTTATCCTCAGCGATCAAGGTGATGGGATCC
TGAAGCCCACTCTGCCGTCGGTTGCCCGTGTTGAGCACATGCGAAATGGA
TATTCCTCCGAGCCGGGCCCACTCGGGAAAATCCATGTGCATCTAGCGAT
CACAGGAgatgtccttcttcctcgcgagagcgaggagatgaaagcgcagg
aggcaggaggaaatgtGTCATGA back to top
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