EWM29058.1, cds1584 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
Homology
BLAST of EWM29058.1 vs. NCBI_GenBank
Match: gi|585111577|gb|EWM29058.1| (hypothetical protein Naga_100024g48 [Nannochloropsis gaditana]) HSP 1 Score: 818.535 bits (2113), Expect = 0.000e+0 Identity = 390/390 (100.00%), Postives = 390/390 (100.00%), Query Frame = 0
Query: 1 MQSRKIALKVFASIFLVLFCMNALVLDMPISIFSETTQHTQLRATPCPASSLLEDILVVISYHWNVGKLVYLTSMLDLIQTYETKVDVLIVTNNDKALHKFLAARGYIEKSNPTIQLWQAPTSNDSNKYSLLWVHRQAIEKAVERHPNYTSIFYMEDDTHLSWPTVVSWALDTEVLEPLNFTRCNYRTEVDAETGDFNVLDYPYFLSITSESVLDATRNTDFLRLQERLRKQPALDCGKHHDKTRWSVGVHDRFISPTYPYQGMWMATRAQLARFMAHPYWKKKIASTATLPAGMGMGYPERTTVMNLLINVPEGFRSNCMVPFILSDQGDGILKPTLPSVARVEHMRNGYSSEPGPLGKIHVHLAITGDVLLPRESEEMKAQEAGGNVS 390
MQSRKIALKVFASIFLVLFCMNALVLDMPISIFSETTQHTQLRATPCPASSLLEDILVVISYHWNVGKLVYLTSMLDLIQTYETKVDVLIVTNNDKALHKFLAARGYIEKSNPTIQLWQAPTSNDSNKYSLLWVHRQAIEKAVERHPNYTSIFYMEDDTHLSWPTVVSWALDTEVLEPLNFTRCNYRTEVDAETGDFNVLDYPYFLSITSESVLDATRNTDFLRLQERLRKQPALDCGKHHDKTRWSVGVHDRFISPTYPYQGMWMATRAQLARFMAHPYWKKKIASTATLPAGMGMGYPERTTVMNLLINVPEGFRSNCMVPFILSDQGDGILKPTLPSVARVEHMRNGYSSEPGPLGKIHVHLAITGDVLLPRESEEMKAQEAGGNVS
Sbjct: 1 MQSRKIALKVFASIFLVLFCMNALVLDMPISIFSETTQHTQLRATPCPASSLLEDILVVISYHWNVGKLVYLTSMLDLIQTYETKVDVLIVTNNDKALHKFLAARGYIEKSNPTIQLWQAPTSNDSNKYSLLWVHRQAIEKAVERHPNYTSIFYMEDDTHLSWPTVVSWALDTEVLEPLNFTRCNYRTEVDAETGDFNVLDYPYFLSITSESVLDATRNTDFLRLQERLRKQPALDCGKHHDKTRWSVGVHDRFISPTYPYQGMWMATRAQLARFMAHPYWKKKIASTATLPAGMGMGYPERTTVMNLLINVPEGFRSNCMVPFILSDQGDGILKPTLPSVARVEHMRNGYSSEPGPLGKIHVHLAITGDVLLPRESEEMKAQEAGGNVS 390
BLAST of EWM29058.1 vs. NCBI_GenBank
Match: gi|585103431|gb|EWM22808.1| (hypothetical protein Naga_100178g6 [Nannochloropsis gaditana]) HSP 1 Score: 594.349 bits (1531), Expect = 0.000e+0 Identity = 284/388 (73.20%), Postives = 326/388 (84.02%), Query Frame = 0
Query: 1 MQSRKIALKVFASIFLVLFCMNALVLDMPISIFSETTQHTQLRATPCPASSLLEDILVVISYHWNVGKLVYLTSMLDLIQTYETKVDVLIVTNNDKALHKFLAARGYIEKSNPTIQLWQAPTSNDSNKYSLLWVHRQAIEKAVERHPNYTSIFYMEDDTHLSWPTVVSWALDTEVLEPLNFTRCNYRTEVDAETGDFNVLDYPYF-LSITSESVLDATRNTDFLRLQERLRKQPALDCGKHHDKTRWSVGVHDRFISPTYPYQGMWMATRAQLARFMAHPYWKKKIASTATLPAGMGMGYPERTTVMNLLINVPEGFRSNCMVPFILSDQGDGILKPTLPSVARVEHMRNGYSSE-PGPLGKIHVHLAITGDVLLPRESEEMKAQEAG 386
M+ R L+ A F VLFC++ +L+M IS + +T QH QL A P ASSLLEDILVVISYHWNVGKLVYLT+MLDLIQTYET+VDVLIVT+ND+ALHK LAA GY+ SNPT+QLWQAPT++D +KYSLLW HRQAIE AVERHP YTSIFYMEDDTHL+WPTVVSWALDTE+LEPLNFTRC YRTEVD +TGDFN++DY L IT ++VLDATRN DF+R+QERL+KQPAL CG+H DKT+W+ GVHDRF+SPT PYQGMWMATRAQLARFMAH +W K++A ATL A M MGYPER+TVMNLLINVPEGFRSNCMVPF+LSDQ DG+LKP LP VARVEHMRNGYS + PLGK H+ +AI G +LLPRE EEMKA+E
Sbjct: 1 MRIRIRTLQAAAFAFSVLFCIHVFLLNMSISNWGKTRQHMQLAAKPSLASSLLEDILVVISYHWNVGKLVYLTAMLDLIQTYETRVDVLIVTDNDEALHKILAAWGYMGNSNPTLQLWQAPTTDDKHKYSLLWAHRQAIEDAVERHPGYTSIFYMEDDTHLTWPTVVSWALDTEILEPLNFTRCIYRTEVDVKTGDFNMMDYTNTPLCITRKNVLDATRNDDFVRIQERLKKQPALRCGRHRDKTQWTCGVHDRFVSPTEPYQGMWMATRAQLARFMAHSFWIKEMALNATLAADMIMGYPERSTVMNLLINVPEGFRSNCMVPFVLSDQYDGVLKPILPLVARVEHMRNGYSPDTTTPLGKTHLQVAIKGKILLPREREEMKAREKA 388
BLAST of EWM29058.1 vs. NCBI_GenBank
Match: gi|545362251|ref|XP_005646369.1| (hypothetical protein COCSUDRAFT_66698 [Coccomyxa subellipsoidea C-169] >gi|384248341|gb|EIE21825.1| hypothetical protein COCSUDRAFT_66698 [Coccomyxa subellipsoidea C-169]) HSP 1 Score: 110.153 bits (274), Expect = 2.251e-23 Identity = 87/311 (27.97%), Postives = 140/311 (45.02%), Query Frame = 0
Query: 49 ASSLLEDILVVISYHWNVGKLVYLTSMLDLIQTYETKVDVLIVTNNDKALHKFLAARGYIEKSNPTIQLWQAPTSNDS-NKYSLLWVHRQAIEKAVERHPNYTSIFYMEDDTHLSWPTVVSWALDTEVLEPLNFTRCNYRTEVDAETGDFNVLDYPYFLSITSESVLDATRNTDFLRLQERLRKQPALDCGKHHDKTRWSVGVHDRFISPTYPYQGMWMATRAQLARFMAHPYWKKKIASTATLP-AGMGMGYPERTTVMNLLINVPEGFRSNCMVPFILSDQGDGILK----PTLPSVARVEHMRNGYSS 353
+ LLE + V +++HW+V L L + I Y T V + I++N + L R I + W T+ + L +VHR +++A ++ +YT+ Y+E D ++ WP ++ WA DT +LEPL F R YR E TG + D ++IT+ +L+ R R + L KH F+ PY +W+ATR+QLA+F+ W + A A G+ + ++VP+GF S +VP+ G+ + P + A +EHM N Y S
Sbjct: 92 SGPLLEHMFVCVTFHWDVSGLTLLRQAVMTISHYPTTVTMCIISNRPELL------RQAIREWGSGADHWVCGTNQTLLDPLHLAFVHRSYMDQAF-KNKDYTTFMYLEHDMNVPWPALLGWAADTPLLEPLGFQRGFYRVEPSQHTGLPTLTDQIGRINITAYEK----------KLRVRFRDEVDLVKEKH-------------FVQLPNPYFAVWVATRSQLAKFLRSAQWDVRYKPWAVRAMAACGLQF----------VDVPKGFFSAAVVPY-----NPGVPQQRQPPRMNVHAAIEHMSNKYCS 357
BLAST of EWM29058.1 vs. NCBI_GenBank
Match: gi|545362249|ref|XP_005646368.1| (hypothetical protein COCSUDRAFT_56274 [Coccomyxa subellipsoidea C-169] >gi|384248340|gb|EIE21824.1| hypothetical protein COCSUDRAFT_56274 [Coccomyxa subellipsoidea C-169]) HSP 1 Score: 83.9593 bits (206), Expect = 7.782e-15 Identity = 79/279 (28.32%), Postives = 124/279 (44.44%), Query Frame = 0
Query: 79 IQTYETKVDVLIVTNNDKALHKFLAARGYIEKSNPTIQLWQAPTSNDSNKYSLLWVHRQAIEKAVER-HPNYTSIFYMEDDTHLSWPTVVSWALDTEVLEPLNFTRCNYRTEVDAETGDFNVLDYPYFLSITSESVLDATRNTDFLRLQERLRKQPALDCGKHHDKTRWSVG---VHDR-FISPTYPYQGMWMATRAQLARFMAHPYWKKKIASTATLP-AGMGMGYPERTTVMNLLINVPEGFRSNCMVPFILSDQGDGILKPTLPSVARVEHMRNGY 351
++ Y TKV + ++TN + L LA + + ++ L +P + S++Y L + HR +E+A++ P YT+ Y+E D LSW ++ WA D VL L F R YR E + G L +T + ER++ L +TR +G V ++ F+ PY GMW+A R +L F W K+I T A G+ + I P+GF S+ +VP+ D G L + + VEH+ N Y
Sbjct: 7 LERYPTKVAIRVLTNQPQRLR--LALQSWSSQA-----LVCSPEAALSHRYQLAFAHRTYMEEALKSTDPEYTAFIYLESDIRLSWRALLGWAADEPVLSRLGFQRAFYRVEPIEQNG---------LLGLTDQ--------------MERVQ----LATYPRTVRTRAMLGEEIVQEKYFLQLPNPYMGMWIADRDRLVNFTTSLQWTKEIDPWDTREMAACGLQF----------IGTPDGFVSSAVVPY---DPESG----QLDADSAVEHLSNKY 234
BLAST of EWM29058.1 vs. NCBI_GenBank
Match: gi|585099609|gb|EWM20191.1| (hypothetical protein Naga_101107g2 [Nannochloropsis gaditana] >gi|585099610|gb|EWM20192.1| hypothetical protein Naga_101107g2 [Nannochloropsis gaditana] >gi|585099611|gb|EWM20193.1| hypothetical protein Naga_101107g2 [Nannochloropsis gaditana]) HSP 1 Score: 80.1073 bits (196), Expect = 5.391e-13 Identity = 85/317 (26.81%), Postives = 132/317 (41.64%), Query Frame = 0
Query: 40 TQLRATPCPASSLLEDILVVISYHWNVGKLVYLTSMLDLIQTYETKVDVLIVTNNDKALHKFLAARGYIEKSNPTIQLWQAPTSNDSNKYSLLWVHRQAIEKAVERHPNYTSIFYMEDDTHLSWPTVVSWALDTEVLEPLNFTRCNYRTEVDAETGDFNVLDYPYFLSITSESVLDATRNTDFLRLQERLRKQPALDCGKHHDKTRWSVGVHDRFISPTYPYQGMWMATRAQLARFMAHPYWKKKIASTATLPAGMGMGYPERTTVMNLLINVPEGFRSNCMVPFILSDQGDGILKPTLPSVARVEHMRNGYSSEPG 356
+Q R TP +LL I V IS+H+NV +L YL+ L+ + ++ DV I TN L +L + + L Q N S L W R+A++ A + +Y + ++EDD ++W ++ W D ++L+ NFTR R E+ G+ + LD+ DA RL P D G+ + G Y GM++ATR Q+ F+ +W IA G G + + + L NVPEG+ ++PF I + A + H N Y P
Sbjct: 61 SQSRQTP----TLLGRIHVSISFHFNVQRLTYLSRNLETMSLWDNVPDVCIGTNEPSKLLAYLQNPVTGTAFSRKVTLCQ--IKNLSLPNLLNWRTREAMQLAFQSSVHYNTFVFVEDDVFITWDKMLKWEEDIQILKAHNFTRTFLRYEISPLNGEPHTLDFH-----------DAG--------PSRLVSFPQQD-GQDAKYFVQAGGFEG-------TYAGMFVATRQQMLDFINSSFW-SFIADRFCCDEG---GREDASWKIQSL-NVPEGWDKTGLLPF-------NITTGRVDDRALLFHQPNNYYGRPA 332
BLAST of EWM29058.1 vs. NCBI_GenBank
Match: gi|585099629|gb|EWM20203.1| (hypothetical protein Naga_100947g2 [Nannochloropsis gaditana]) HSP 1 Score: 77.7962 bits (190), Expect = 2.787e-12 Identity = 88/328 (26.83%), Postives = 136/328 (41.46%), Query Frame = 0
Query: 29 PISIFSETTQHTQLRATPCPASSLLEDILVVISYHWNVGKLVYLTSMLDLIQTYETKVDVLIVTNNDKALHKFLAARGYIEKSNPTIQLWQAPTSNDSNKYSLLWVHRQAIEKAVERHPNYTSIFYMEDDTHLSWPTVVSWALDTEVLEPLNFTRCNYRTEVDAETGDFNVLDYPYFLSITSESVLDATRNTDFLRLQERLRKQPALDCGKHHDKTRWSVGVHDRFISPTYPYQGMWMATRAQLARFMAHPYWKKKIASTATLPAGMGMGYPERTTVMNLLINVPEGFRSNCMVPFILSDQGDGILKPTLPSVARVEHMRNGYSSEPG 356
P FS+ +Q R TP +LL I V IS+H+NV +L YL+ L+ + ++ DV I TN L +L + + L Q +N S L W R+A++ A + +Y + ++EDD ++W ++ W D+++L+ NFTR R E+ G+ + LD+ DA RL P D G+ + G Y GM++ATR Q+ F+ +W IA G E + INVPEG+ ++PF I + A + H N Y P
Sbjct: 52 PYKTFSKLG--SQSRQTP----TLLGRIHVSISFHFNVQRLTYLSRNLETMSLWDNVPDVCIGTNEPSKLLAYLQNPVTGTAFSRKVTLCQ--INNLSLPNLLNWRTREAMQLAFQSSVHYNTFVFVEDDVFITWDKMLKWEEDSQMLKAHNFTRTFLRYEISPLNGEPHTLDFH-----------DAG--------PSRLVAFPQQD-GEDAKYFVQAGGFEG-------TYAGMFVATRQQMLDFINSSFW-SFIADRFCCDEGG----REDASWKIQSINVPEGWDKTGLLPF-------NITTGRVDDRALLFHQPNNYYGRPA 332 The following BLAST results are available for this feature:
BLAST of EWM29058.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 6
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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