EWM29058.1, cds1584 (CDS) Nannochloropsis gaditana

Overview
NameEWM29058.1
Unique Namecds1584
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:1004511..1005683 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29058.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100024g48.4316.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:1004511..1005683 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM29058.1 vs. NCBI_GenBank
Match: gi|585111577|gb|EWM29058.1| (hypothetical protein Naga_100024g48 [Nannochloropsis gaditana])

HSP 1 Score: 818.535 bits (2113), Expect = 0.000e+0
Identity = 390/390 (100.00%), Postives = 390/390 (100.00%), Query Frame = 0
Query:    1 MQSRKIALKVFASIFLVLFCMNALVLDMPISIFSETTQHTQLRATPCPASSLLEDILVVISYHWNVGKLVYLTSMLDLIQTYETKVDVLIVTNNDKALHKFLAARGYIEKSNPTIQLWQAPTSNDSNKYSLLWVHRQAIEKAVERHPNYTSIFYMEDDTHLSWPTVVSWALDTEVLEPLNFTRCNYRTEVDAETGDFNVLDYPYFLSITSESVLDATRNTDFLRLQERLRKQPALDCGKHHDKTRWSVGVHDRFISPTYPYQGMWMATRAQLARFMAHPYWKKKIASTATLPAGMGMGYPERTTVMNLLINVPEGFRSNCMVPFILSDQGDGILKPTLPSVARVEHMRNGYSSEPGPLGKIHVHLAITGDVLLPRESEEMKAQEAGGNVS 390
            MQSRKIALKVFASIFLVLFCMNALVLDMPISIFSETTQHTQLRATPCPASSLLEDILVVISYHWNVGKLVYLTSMLDLIQTYETKVDVLIVTNNDKALHKFLAARGYIEKSNPTIQLWQAPTSNDSNKYSLLWVHRQAIEKAVERHPNYTSIFYMEDDTHLSWPTVVSWALDTEVLEPLNFTRCNYRTEVDAETGDFNVLDYPYFLSITSESVLDATRNTDFLRLQERLRKQPALDCGKHHDKTRWSVGVHDRFISPTYPYQGMWMATRAQLARFMAHPYWKKKIASTATLPAGMGMGYPERTTVMNLLINVPEGFRSNCMVPFILSDQGDGILKPTLPSVARVEHMRNGYSSEPGPLGKIHVHLAITGDVLLPRESEEMKAQEAGGNVS
Sbjct:    1 MQSRKIALKVFASIFLVLFCMNALVLDMPISIFSETTQHTQLRATPCPASSLLEDILVVISYHWNVGKLVYLTSMLDLIQTYETKVDVLIVTNNDKALHKFLAARGYIEKSNPTIQLWQAPTSNDSNKYSLLWVHRQAIEKAVERHPNYTSIFYMEDDTHLSWPTVVSWALDTEVLEPLNFTRCNYRTEVDAETGDFNVLDYPYFLSITSESVLDATRNTDFLRLQERLRKQPALDCGKHHDKTRWSVGVHDRFISPTYPYQGMWMATRAQLARFMAHPYWKKKIASTATLPAGMGMGYPERTTVMNLLINVPEGFRSNCMVPFILSDQGDGILKPTLPSVARVEHMRNGYSSEPGPLGKIHVHLAITGDVLLPRESEEMKAQEAGGNVS 390          
BLAST of EWM29058.1 vs. NCBI_GenBank
Match: gi|585103431|gb|EWM22808.1| (hypothetical protein Naga_100178g6 [Nannochloropsis gaditana])

HSP 1 Score: 594.349 bits (1531), Expect = 0.000e+0
Identity = 284/388 (73.20%), Postives = 326/388 (84.02%), Query Frame = 0
Query:    1 MQSRKIALKVFASIFLVLFCMNALVLDMPISIFSETTQHTQLRATPCPASSLLEDILVVISYHWNVGKLVYLTSMLDLIQTYETKVDVLIVTNNDKALHKFLAARGYIEKSNPTIQLWQAPTSNDSNKYSLLWVHRQAIEKAVERHPNYTSIFYMEDDTHLSWPTVVSWALDTEVLEPLNFTRCNYRTEVDAETGDFNVLDYPYF-LSITSESVLDATRNTDFLRLQERLRKQPALDCGKHHDKTRWSVGVHDRFISPTYPYQGMWMATRAQLARFMAHPYWKKKIASTATLPAGMGMGYPERTTVMNLLINVPEGFRSNCMVPFILSDQGDGILKPTLPSVARVEHMRNGYSSE-PGPLGKIHVHLAITGDVLLPRESEEMKAQEAG 386
            M+ R   L+  A  F VLFC++  +L+M IS + +T QH QL A P  ASSLLEDILVVISYHWNVGKLVYLT+MLDLIQTYET+VDVLIVT+ND+ALHK LAA GY+  SNPT+QLWQAPT++D +KYSLLW HRQAIE AVERHP YTSIFYMEDDTHL+WPTVVSWALDTE+LEPLNFTRC YRTEVD +TGDFN++DY    L IT ++VLDATRN DF+R+QERL+KQPAL CG+H DKT+W+ GVHDRF+SPT PYQGMWMATRAQLARFMAH +W K++A  ATL A M MGYPER+TVMNLLINVPEGFRSNCMVPF+LSDQ DG+LKP LP VARVEHMRNGYS +   PLGK H+ +AI G +LLPRE EEMKA+E  
Sbjct:    1 MRIRIRTLQAAAFAFSVLFCIHVFLLNMSISNWGKTRQHMQLAAKPSLASSLLEDILVVISYHWNVGKLVYLTAMLDLIQTYETRVDVLIVTDNDEALHKILAAWGYMGNSNPTLQLWQAPTTDDKHKYSLLWAHRQAIEDAVERHPGYTSIFYMEDDTHLTWPTVVSWALDTEILEPLNFTRCIYRTEVDVKTGDFNMMDYTNTPLCITRKNVLDATRNDDFVRIQERLKKQPALRCGRHRDKTQWTCGVHDRFVSPTEPYQGMWMATRAQLARFMAHSFWIKEMALNATLAADMIMGYPERSTVMNLLINVPEGFRSNCMVPFVLSDQYDGVLKPILPLVARVEHMRNGYSPDTTTPLGKTHLQVAIKGKILLPREREEMKAREKA 388          
BLAST of EWM29058.1 vs. NCBI_GenBank
Match: gi|545362251|ref|XP_005646369.1| (hypothetical protein COCSUDRAFT_66698 [Coccomyxa subellipsoidea C-169] >gi|384248341|gb|EIE21825.1| hypothetical protein COCSUDRAFT_66698 [Coccomyxa subellipsoidea C-169])

HSP 1 Score: 110.153 bits (274), Expect = 2.251e-23
Identity = 87/311 (27.97%), Postives = 140/311 (45.02%), Query Frame = 0
Query:   49 ASSLLEDILVVISYHWNVGKLVYLTSMLDLIQTYETKVDVLIVTNNDKALHKFLAARGYIEKSNPTIQLWQAPTSNDS-NKYSLLWVHRQAIEKAVERHPNYTSIFYMEDDTHLSWPTVVSWALDTEVLEPLNFTRCNYRTEVDAETGDFNVLDYPYFLSITSESVLDATRNTDFLRLQERLRKQPALDCGKHHDKTRWSVGVHDRFISPTYPYQGMWMATRAQLARFMAHPYWKKKIASTATLP-AGMGMGYPERTTVMNLLINVPEGFRSNCMVPFILSDQGDGILK----PTLPSVARVEHMRNGYSS 353
            +  LLE + V +++HW+V  L  L   +  I  Y T V + I++N  + L      R  I +       W   T+    +   L +VHR  +++A  ++ +YT+  Y+E D ++ WP ++ WA DT +LEPL F R  YR E    TG   + D    ++IT+             +L+ R R +  L   KH             F+    PY  +W+ATR+QLA+F+    W  +    A    A  G+ +          ++VP+GF S  +VP+       G+ +    P +   A +EHM N Y S
Sbjct:   92 SGPLLEHMFVCVTFHWDVSGLTLLRQAVMTISHYPTTVTMCIISNRPELL------RQAIREWGSGADHWVCGTNQTLLDPLHLAFVHRSYMDQAF-KNKDYTTFMYLEHDMNVPWPALLGWAADTPLLEPLGFQRGFYRVEPSQHTGLPTLTDQIGRINITAYEK----------KLRVRFRDEVDLVKEKH-------------FVQLPNPYFAVWVATRSQLAKFLRSAQWDVRYKPWAVRAMAACGLQF----------VDVPKGFFSAAVVPY-----NPGVPQQRQPPRMNVHAAIEHMSNKYCS 357          
BLAST of EWM29058.1 vs. NCBI_GenBank
Match: gi|545362249|ref|XP_005646368.1| (hypothetical protein COCSUDRAFT_56274 [Coccomyxa subellipsoidea C-169] >gi|384248340|gb|EIE21824.1| hypothetical protein COCSUDRAFT_56274 [Coccomyxa subellipsoidea C-169])

HSP 1 Score: 83.9593 bits (206), Expect = 7.782e-15
Identity = 79/279 (28.32%), Postives = 124/279 (44.44%), Query Frame = 0
Query:   79 IQTYETKVDVLIVTNNDKALHKFLAARGYIEKSNPTIQLWQAPTSNDSNKYSLLWVHRQAIEKAVER-HPNYTSIFYMEDDTHLSWPTVVSWALDTEVLEPLNFTRCNYRTEVDAETGDFNVLDYPYFLSITSESVLDATRNTDFLRLQERLRKQPALDCGKHHDKTRWSVG---VHDR-FISPTYPYQGMWMATRAQLARFMAHPYWKKKIASTATLP-AGMGMGYPERTTVMNLLINVPEGFRSNCMVPFILSDQGDGILKPTLPSVARVEHMRNGY 351
            ++ Y TKV + ++TN  + L   LA + +  ++     L  +P +  S++Y L + HR  +E+A++   P YT+  Y+E D  LSW  ++ WA D  VL  L F R  YR E   + G          L +T +               ER++    L       +TR  +G   V ++ F+    PY GMW+A R +L  F     W K+I    T   A  G+ +          I  P+GF S+ +VP+   D   G     L + + VEH+ N Y
Sbjct:    7 LERYPTKVAIRVLTNQPQRLR--LALQSWSSQA-----LVCSPEAALSHRYQLAFAHRTYMEEALKSTDPEYTAFIYLESDIRLSWRALLGWAADEPVLSRLGFQRAFYRVEPIEQNG---------LLGLTDQ--------------MERVQ----LATYPRTVRTRAMLGEEIVQEKYFLQLPNPYMGMWIADRDRLVNFTTSLQWTKEIDPWDTREMAACGLQF----------IGTPDGFVSSAVVPY---DPESG----QLDADSAVEHLSNKY 234          
BLAST of EWM29058.1 vs. NCBI_GenBank
Match: gi|585099609|gb|EWM20191.1| (hypothetical protein Naga_101107g2 [Nannochloropsis gaditana] >gi|585099610|gb|EWM20192.1| hypothetical protein Naga_101107g2 [Nannochloropsis gaditana] >gi|585099611|gb|EWM20193.1| hypothetical protein Naga_101107g2 [Nannochloropsis gaditana])

HSP 1 Score: 80.1073 bits (196), Expect = 5.391e-13
Identity = 85/317 (26.81%), Postives = 132/317 (41.64%), Query Frame = 0
Query:   40 TQLRATPCPASSLLEDILVVISYHWNVGKLVYLTSMLDLIQTYETKVDVLIVTNNDKALHKFLAARGYIEKSNPTIQLWQAPTSNDSNKYSLLWVHRQAIEKAVERHPNYTSIFYMEDDTHLSWPTVVSWALDTEVLEPLNFTRCNYRTEVDAETGDFNVLDYPYFLSITSESVLDATRNTDFLRLQERLRKQPALDCGKHHDKTRWSVGVHDRFISPTYPYQGMWMATRAQLARFMAHPYWKKKIASTATLPAGMGMGYPERTTVMNLLINVPEGFRSNCMVPFILSDQGDGILKPTLPSVARVEHMRNGYSSEPG 356
            +Q R TP    +LL  I V IS+H+NV +L YL+  L+ +  ++   DV I TN    L  +L         +  + L Q    N S    L W  R+A++ A +   +Y +  ++EDD  ++W  ++ W  D ++L+  NFTR   R E+    G+ + LD+            DA           RL   P  D G+       + G           Y GM++ATR Q+  F+   +W   IA       G   G  + +  +  L NVPEG+    ++PF        I    +   A + H  N Y   P 
Sbjct:   61 SQSRQTP----TLLGRIHVSISFHFNVQRLTYLSRNLETMSLWDNVPDVCIGTNEPSKLLAYLQNPVTGTAFSRKVTLCQ--IKNLSLPNLLNWRTREAMQLAFQSSVHYNTFVFVEDDVFITWDKMLKWEEDIQILKAHNFTRTFLRYEISPLNGEPHTLDFH-----------DAG--------PSRLVSFPQQD-GQDAKYFVQAGGFEG-------TYAGMFVATRQQMLDFINSSFW-SFIADRFCCDEG---GREDASWKIQSL-NVPEGWDKTGLLPF-------NITTGRVDDRALLFHQPNNYYGRPA 332          
BLAST of EWM29058.1 vs. NCBI_GenBank
Match: gi|585099629|gb|EWM20203.1| (hypothetical protein Naga_100947g2 [Nannochloropsis gaditana])

HSP 1 Score: 77.7962 bits (190), Expect = 2.787e-12
Identity = 88/328 (26.83%), Postives = 136/328 (41.46%), Query Frame = 0
Query:   29 PISIFSETTQHTQLRATPCPASSLLEDILVVISYHWNVGKLVYLTSMLDLIQTYETKVDVLIVTNNDKALHKFLAARGYIEKSNPTIQLWQAPTSNDSNKYSLLWVHRQAIEKAVERHPNYTSIFYMEDDTHLSWPTVVSWALDTEVLEPLNFTRCNYRTEVDAETGDFNVLDYPYFLSITSESVLDATRNTDFLRLQERLRKQPALDCGKHHDKTRWSVGVHDRFISPTYPYQGMWMATRAQLARFMAHPYWKKKIASTATLPAGMGMGYPERTTVMNLLINVPEGFRSNCMVPFILSDQGDGILKPTLPSVARVEHMRNGYSSEPG 356
            P   FS+    +Q R TP    +LL  I V IS+H+NV +L YL+  L+ +  ++   DV I TN    L  +L         +  + L Q   +N S    L W  R+A++ A +   +Y +  ++EDD  ++W  ++ W  D+++L+  NFTR   R E+    G+ + LD+            DA           RL   P  D G+       + G           Y GM++ATR Q+  F+   +W   IA       G      E  +     INVPEG+    ++PF        I    +   A + H  N Y   P 
Sbjct:   52 PYKTFSKLG--SQSRQTP----TLLGRIHVSISFHFNVQRLTYLSRNLETMSLWDNVPDVCIGTNEPSKLLAYLQNPVTGTAFSRKVTLCQ--INNLSLPNLLNWRTREAMQLAFQSSVHYNTFVFVEDDVFITWDKMLKWEEDSQMLKAHNFTRTFLRYEISPLNGEPHTLDFH-----------DAG--------PSRLVAFPQQD-GEDAKYFVQAGGFEG-------TYAGMFVATRQQMLDFINSSFW-SFIADRFCCDEGG----REDASWKIQSINVPEGWDKTGLLPF-------NITTGRVDDRALLFHQPNNYYGRPA 332          
The following BLAST results are available for this feature:
BLAST of EWM29058.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 6
Match NameE-valueIdentityDescription
gi|585111577|gb|EWM29058.1|0.000e+0100.00hypothetical protein Naga_100024g48 [Nannochlorops... [more]
gi|585103431|gb|EWM22808.1|0.000e+073.20hypothetical protein Naga_100178g6 [Nannochloropsi... [more]
gi|545362251|ref|XP_005646369.1|2.251e-2327.97hypothetical protein COCSUDRAFT_66698 [Coccomyxa s... [more]
gi|545362249|ref|XP_005646368.1|7.782e-1528.32hypothetical protein COCSUDRAFT_56274 [Coccomyxa s... [more]
gi|585099609|gb|EWM20191.1|5.391e-1326.81hypothetical protein Naga_101107g2 [Nannochloropsi... [more]
gi|585099629|gb|EWM20203.1|2.787e-1226.83hypothetical protein Naga_100947g2 [Nannochloropsi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1588rna1588Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications