rna1587, rna1587 (mRNA) Nannochloropsis gaditana

Overview
Namerna1587
Unique Namerna1587
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1211
Alignment locationCM002457.1:1003152..1003835 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100024g49.4358.mrna
Orig protein idgnl|cribi|Naga_100024g49.4358
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:1003152..1003835 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100024g49gene1526Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1587rna1587-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29100.1cds1583Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1587 ID=rna1587|Name=rna1587|organism=Nannochloropsis gaditana|type=mRNA|length=1211bp
ATGAAAGGCCATCGAATGTGCACATGACGTGTCCGAGGCCGCGTCTCCGT
GAGGTCGGACCCCATTTCTGGTCATTACATCGGGCGCAGGGAAGCTTCCT
GGCCTCGGCGGCTACGAGGGCCGGGGCGAGATCCCGCGAGGGGCATCCGC
TCGTCCGGTGTAGCAACTTTTGTGTGCGAGCATCGCGACCGTCGCCTGGC
AGTCTGCTCACATGACCATGAACCTCCAGGGCGGAGTATCGCACACAGAC
AGGGACCGTGGACGAGGAAGGGAAGGGGGCGGTGAAGTGCCAAGACTCGT
CTTTTCGCCCTTAGCCCGCTCTTGAACAAAGTAGTACTTGTGCTGCATAG
CGCCCGCTCGATAGGCTGAGTTTCCTGAGGAATTGAGGACAGAAAGTTTT
CCACTTAGCTTGCCGAACATGAATGCGGACGTACAAAATCAAGAGCTTAT
GCGCCTATTCCGCATCCGGAAGACTGTTCTCAAGATGCTGACGAAGCGTG
GATACAACGTGTTAGAACAGACCCTGGAAGCTACCTTCAGTTCCTTTTCT
GACGATGTGGCGCGGATTTCTTTGGAAAACAACAACTGCACGGCCCGTGA
GGCCTGCACCATCAATGTGGGGAAGATTGATGACGCCGCGGACGTGGTTT
TTGTCTTCTTTTCAGACGATGAGAAGGGATTAGGCACGAAGCCCATTCAA
AAATACGTAGAACGCCTGTTGCAGGCAGGATCAAGCTGCGGAATTATCAT
CTACAGAAACAATATCACGGCAATTGCCAAGAAGCTCCTCCAGCCCGGAG
CCATTCCGGGAGTCAAGCTCGAAGTCTTCAAGGAATCGGAACTTCTGGTT
GATATCACCGAGCACACTTTGGTCCCTGAACACGTTGTCCTGACGCCTGA
TCAGAAGGCAGAGGTCCTAGGTCGGTACAAGCTGAAGGAAAGCCAGTTGC
CGAAGATCCAATCAGCGGATCCAATCGCTCGCTATTATGGATTGCAGCGA
GGGACTGTTGTGAAAATTATTCGGCTGTCAGAGACTGCGGGTCGCTACAT
AACCTATCGTGTCTGCGTGTAAGAGCTCGTGCCTAGGGTCGAAGGCAGCG
TCCTAGAGTGCGAATGCTGACACAAGAGAGAGGGGTGTATTTTTGCAAAG
TAAACGTCCCGTAATTTAAAGGATAGCGTTGTAAAGCATGATACATTTCG
TTTCTTTTCAA
back to top

protein sequence of rna1587

>rna1587-protein ID=rna1587-protein|Name=rna1587|organism=Nannochloropsis gaditana|type=polypeptide|length=192bp
MVTLIVACICKYFKAMDSRPAGPRISMFETSASPSIDPDQDLFPHCLVWS
PLPVLTWFLPFVGHMGIATMDGVMWDFAGPYSIGRHKLAFGPPTRYIQLQ
IPRGREIEYDEAVASANATYSHRTHNLLCDNCHSHCAWALNTFKYKGARW
WNMVVLSLYMLVMGKWVSFLAAIKTLGPAMLVLVIGLTIIYV
back to top

mRNA from alignment at CM002457.1:1003152..1003835-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1587 ID=rna1587|Name=rna1587|organism=Nannochloropsis gaditana|type=mRNA|length=684bp|location=Sequence derived from alignment at CM002457.1:1003152..1003835- (Nannochloropsis gaditana)
ATGGTCACGCTTATGTTTCTCCTTGCGTTTATTGTTGAAAACAGGAGCTT
GAAGCGCAGCATGCCCCATTCCTGAATAAGCATTTGACCTCCCCGCGGGC
CTTCATTTTATTCCACCAGCGTGGCCTGTATCTGTAAATACTTCAAGGCC
ATGGATTCCAGACCAGCGGGGCCTAGGATCAGCATGTTTGAGACCTCTGC
ATCACCTAGCATTGACCCAGACCAAGACCTGTTCCCGCACTGTTTGGTGT
GGTCACCTCTGCCTGTCTTGACATGGTTTTTGCCCTTCGTCGGGCACATG
GGTATTGCGACAATGGATGGGGTAATGTGGGATTTTGCTGGACCCTACTC
GATCGGTAGACATAAACTTGCGTTCGGTCCTCCAACGCGCTATATTCAGT
TGCAAATCCCTCGCGGCAGAGAAATTGAGTACGACGAGGCTGTGGCTTCA
GCCAACGCCACTTATTCTCACCGCACTCATAATCTTCTGTGCGACAACTG
CCACAGTCATTGCGCGTGGGCGCTGAACACATTCAAATACAAAGGTGCAC
GTTGGTGGAATATGGTGGTGCTATCTTTATATATGCTTGTGATGGGCAAG
TGGGTAAGTTTTCTGGCTGCAATCAAGACGTTGGGACCTGCCATGTTAGT
CCTCGTTATTGGATTGACTATTATATACGTGTAG
back to top

Coding sequence (CDS) from alignment at CM002457.1:1003152..1003835-

>rna1587 ID=rna1587|Name=rna1587|organism=Nannochloropsis gaditana|type=CDS|length=1158bp|location=Sequence derived from alignment at CM002457.1:1003152..1003835- (Nannochloropsis gaditana)
CGTGGCCTGTATCTGTAAATACTTCAAGGCCATGGATTCCAGACCAGCGG
GGCCTAGGATCAGCATGTTTGAGACCTCTGCATCACCTAGCATTGACCCA
GACCAAGACCTGTTCCCGCACTGTTTGGTGTGGTCACCTCTGCCTGTCTT
GACATGGTTTTTGCCCTTCGTCGGGCACATGGGTATTGCGACAATGGATG
GGGTAATGTGGGATTTTGCTGGACCCTACTCGATCGGTAGACATAAACTT
GCGTTCGGTCCTCCAACGCGCTATATTCAGTTGCAAATCCCTCGCGGCAG
AGAAATTGAGTACGACGAGGCTGTGGCTTCAGCCAACGCCACTTATTCTC
ACCGCACTCATAATCTTCTGTGCGACAACTGCCACAGTCATTGCGCGTGG
GCGCTGAACACATTCAAATACAAAGGTGCACGTTGGTGGAATATGGTGGT
GCTATCTTTATATATGCTTGTGATGGGCAAGTGGGTAAGTTTTCTGGCTG
CAATCAAGACGTTGGGACCTGCCATGTTAGTCCTCGTTATTGGATTGACT
ATTATATACGTGTAGATGGTCACGCTTATCGTGGCCTGTATCTGTAAATA
CTTCAAGGCCATGGATTCCAGACCAGCGGGGCCTAGGATCAGCATGTTTG
AGACCTCTGCATCACCTAGCATTGACCCAGACCAAGACCTGTTCCCGCAC
TGTTTGGTGTGGTCACCTCTGCCTGTCTTGACATGGTTTTTGCCCTTCGT
CGGGCACATGGGTATTGCGACAATGGATGGGGTAATGTGGGATTTTGCTG
GACCCTACTCGATCGGTAGACATAAACTTGCGTTCGGTCCTCCAACGCGC
TATATTCAGTTGCAAATCCCTCGCGGCAGAGAAATTGAGTACGACGAGGC
TGTGGCTTCAGCCAACGCCACTTATTCTCACCGCACTCATAATCTTCTGT
GCGACAACTGCCACAGTCATTGCGCGTGGGCGCTGAACACATTCAAATAC
AAAGGTGCACGTTGGTGGAATATGGTGGTGCTATCTTTATATATGCTTGT
GATGGGCAAGTGGGTAAGTTTTCTGGCTGCAATCAAGACGTTGGGACCTG
CCATGTTAGTCCTCGTTATTGGATTGACTATTATATACGTGTAGATGGTC
ACGCTTAT
back to top
Synonyms
Publications