|
|
Properties
| Property Name | Value |
|---|
| Product | dna-directed rna polymerases ii 24 kda |
| Orig transcript id | gnl|cribi|Naga_100024g50.4309.mrna |
| Orig protein id | gnl|cribi|Naga_100024g50.4309 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002457.1 | supercontig | CM002457.1:1001215..1003034 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna1586 ID=rna1586|Name=rna1586|organism=Nannochloropsis gaditana|type=mRNA|length=4097bp
CTCACGGAGACGCGGCCTCGGACACGTCATGTGCACATTCGATGGCCTTT
CATGACACCCTTTGGGACCCGCGGCGAGCGGCAGTGCCTCTCTTGGGGTA
TATTCACCGCCTTTGCGCACCTTGAACGTGCGTGCGCGAGACTTTCCCTC
ACACTGCAACCTTCTCCGAATGTATGTCTAAAACCTTGTGTCGTTCGAAC
AAATGTCCTGACCCGCTTCCGTGCCACAAAATCCCGCCGTCGGTGCACAG
TGAGAAGACCTAGGCTCAAGAGGCGGGGTTCAAGTTGTCGTAAATGACTT
CGGGTGTTGGCAGTGGGGACAGCCCCTTGGCTCCCCCGGATGCCAGCCAT
CCCTCCGCCTGGTCGAGCCTGGCGGCAACGCCCACCTCTTGTCCCAAGAA
TATACGGGAAGACGCAGAGAGGGCGGAAAGCGCAAATATGGCCAAGACCC
CGAACGATAATTTCGTTTGGCAGTCGCAGCAGCAGCAGCAGCGGCGCCAG
TACGAAGAGAGTCAGCAGCATCTGGAGCAGCAACAGCAACAAGAGATCTT
GGAGGCGCCGCACTATGCATCTGACCAAGGCGGGGTCTGGGAAGACGAAG
AGGGCATGGTGGATGTAGAAGCGATGGTTACCGATGAACTAGGGGGCAGT
CGAACATCTTTAAGCAGCATGCATTCGCAAGAACAAATGATTCATTTGCT
CCCCGAGAAAAACCCCTCGTACGGATTCAAGGAACGGCAGGCATCTTTGT
CTTGCCGTTACCGCCGACAAAGGCACAAGGTGGCCGGAGACAAATGGAAG
ACTATTGGGATGGGAGGTAACCGCGAATCGCACCCGGATCTGACCCAGCA
GCATCGCAGCCCTTCAGACGGGAGCCTGGGGGAGCGGGGGGGAATGGGTG
GCAGGCCGCCTTTGTCCATGACGCATGCCTCCCCCCGCAACGGGCTTAGC
AGGGAGGGGAAGCGGCAAGAGGGCGGAAGTATGACTGGTGCTGTGAGTGG
CAGCAATGGATGGCGCAATGACCCTCCGAATCGAGTGCACTTGGCGACGA
TTCACAGCTTGAACAACGGGCCGGGTCGCCCCCCGGTAAGCCCATTCCAG
ACAAGCCCCAACGAGGACAAGGCACAGCCCTGCTCTTCCTCTGTCGCGCA
GCAGACACGAGAGCCTTGCCATCCCTGCGTGGAGGAGCAGAAGGATCTCC
CCCTCCGCCGAAAGGCCTCGACTGGCCCGCCCGCGGCCCCACCCACCCTG
CGGTCTCGAAGCAGCAGCCGGAGCCCAGCCAAGGGCAAGCGCGGAGACAC
CGGCTTTTCCTCCAGCGTGTCCACATCCTCTCACCGGTCTTCCTCTTGCA
AGCCGCGCCGTCGCGGCCCGCACGACGATTCGATGCGAGTCAGGGCCTCC
CACGCCTTGGCCGCCCTGGTCCACGACATCAACACGCACTCCCGGGCTCT
GATAGGCAAATTTGTGAAGGCCGCGGACGATACCTTCCTAGGGGTGACGG
CGCCCGCAATGGGCCTCTTTCTCACATTTGCGCACGACCTACCGCGCGCC
GTCCACCGTGTGCATTTCGAGAAGGACCTGCGTATGCCCATGCCCCGCCG
CAAGGGGGAAGATACTCGGCACTCCCTCTCCTTCATGTTCCTCCAACCTA
TCCATAGCGGTCGCGGTCGCAAGTATCCCACAGTTCTGGTTCGGAACCCG
TACGGACGCTTGACCTTCTTTTATTTCTTTTACCTCTTTGCCCAACGGGG
CTACAACGTGGTGGTGCAGGACGTACGGGGCCGTGGGGAGTCGACAGGGG
TGTTCGACTGCCTCCACGACCACGACGACGGGCAGGCCACCCTCGAGTGG
ATCACGTCCCAGCCCTGGTACTCTCCCGAGCACGGCATCGGCCTCCTGGG
CATGTCGTACAACGGCTTTGTCTTGTACTCTACTTTCAAGGACCCCGCGA
TTCCCGTGCATCCCGCCGTCAAGGCCGTGGTGCCCATCAACACCACGTCA
CGGCTCTCCACAATGTCCTACCGGGACGGCCCCCTGCATTTGGAGCTGAT
CATTCGCTGGTCGGGCTACCTGTGGACGCTAACCCGGGACACCACCTCCT
TACTGGCCTTGTTGCTTTCTTTGGGCAACGGGTTGATGTTTCTAGGCTAC
TTTGGGCTCTTCGATCATCCCCGTCTTGTTCGCGCCCTCCGACATTTGCC
AGTGGAGGAGATAACCCACATGGTCACGGGGGTGCAACTGAACCGGTTTC
AGATGTTCCTTTCCCCTCCGGGCTGCGATTTTGTCAAAGCTCGCGATGCC
TCAGCTGCCCTTCGTCCCGACCTGCCTCCTGCACAGATTCACGCATCCTG
GTATGACATCTTTTTGATCGATTCTTTCTTTGACTTCAACACCCTGGTGG
CGGCAGGGAACCGAGGGGCGCGGCTGATGATCAGCAGCGACTACCATGTC
AAGCGTTATTTCCACTACGGCGTCCTGGTTCGCGAGGCTTTGACGCATTT
CAAGCGGTACCTGCGCCGCGAGCCGTTGCCCTACACCGATGCGGCGGAGG
AGGAGGAACGAGTGACCATGCAGATCATTCACGCGGCGCCGGGACTGGAA
TGGATGGGACTCCCATCCTGGCCTCCAGCCGCGTCATTTCATGTCCCTCT
CTACCTCTCATCAGAGGGAGGATTGGTCTTTGGCCCCGGAGCGGCTTCGA
AGGGCGCCAGCTACCCTGGCCAGGGAGAGGAGTGCTTGGTCCCAGGCGAA
CGGCGCTACACCTATTTCCCCTCGGACCCGACCCCGAGTGTGGGTGGAAA
CGGAATCGGCTTCTTGGACGCCGGCGAGCGGGTGCAAAACCAGTTGGAAG
CATCCAGGGGAGGTAGAGACCTGCTGGTGTACACGAGTGGGGTGTTGGAG
GAGGACATGTACGTGATCGGCAGCCCCCGGGCGGAACTCCACGTCCGTTG
TATGTCTCCACGCGCGAAGCAAGCAGACTTTGTCGTCCGCCTCTGCGACG
TGTCGCCCGACGGGACGTCACGGAACGTCTGCGACGGCGTTCGTCGTGTT
GACTTTTCGGATGTGGAGAGGCTGGAGGCGCAGGGGATGGAGGGAGAGGG
AGGAAAGACGATGAGCGTGGCGGTGGAAGTGTATCCTACCGCGGTGCGAT
TTCCCAAGGGGCACCGGGTGCGGGTACATGTGGCCTCGGCAGGTTTTATC
CGGTGGGAGAGAAATGTCATGGGTTATGGATACCCCTCTTTCATACCTGT
GCGGTTTGAGGTATTGCACGGCGGGGAGGAGGGGGGTTGGGGTGGATCGG
TGCTTCATCTGCCATTAGTTCCCAGGGAATCTCTGGTGCCAAGTCGAGTA
CGGAAATAAAAGGCGAGACAAACGGGGTTGATAGAGAAAGAAAGGTTTTG
CAATTTTGGGAAACAGCTTCTGGTGAAGCGAAAATTGTCGTCCAAAAATA
ATTTTGGAACGATGCTGTGAAGCAGGTGCACAGACCGTAAGCAGATTAGA
CATGAATGGGAGTATACATTAAGAGATGCGGTTATCAGGCAGCGGGCAGG
TTGAGTCGTGGAAATTTTGAGTCGAAGGTGAAAAGAGGTGCAGTAGGAGG
ATGACGAGCAGACAATTTTGAGCACTGTTTGGCTCGTGTGACACGGGTAA
GTGGATCGATGACTTTGGCTTTCAAAGATAAAGGAGCCTGCCACCATTTT
TGAAAAAAAGGATGACTCTGCTGGGATTTTTGGAATGTGGCCTAATTATC
TGCAGGAGGGGAGCGATGGTGAAAGAGAACAAAAAAGGTGAAGAGAAAGA
ATGCGGAGGAAGCATCTTTATAGGAATTTGCAAACGGAAAGTGGGTGCTG
ACATGGAAGTTTTCACTTCGCTGCCTGGTTTTGTCGTGCTTTTGCAGACC
ATAGGTGTTTTCAGTGCGTCAGTTTGGATCTACTTAGCTGGGAGGGATGG
GACATAATAGTTTTATATTGGAATCTTATCACTGTCGAAAAATTGTCGAT
GCACAAGTAGATGACCGCTGTCGACGCTTCAACAGAGAGGAGATAGCGCC
ACGAGCATGGTCAAAGGATAAAATATAAAACACTGCAATAGTTCTTA back to topprotein sequence of rna1586 >rna1586-protein ID=rna1586-protein|Name=rna1586|organism=Nannochloropsis gaditana|type=polypeptide|length=217bp
MNADVQNQELMRLFRIRKTVLKMLTKRGYNVLEQTLEATFSSFSDDVARI
SLENNNCTAREACTINVGKIDDAADVVFVFFSDDEKGLGTKPIQKYVERL
LQAGSSCGIIIYRNNITAIAKKLLQPGAIPGVKLEVFKESELLVDITEHT
LVPEHVVLTPDQKAEVLGRYKLKESQLPKIQSADPIARYYGLQRGTVVKI
IRLSETAGRYITYRVCV back to topmRNA from alignment at CM002457.1:1001215..1003034+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna1586 ID=rna1586|Name=rna1586|organism=Nannochloropsis gaditana|type=mRNA|length=1820bp|location=Sequence derived from alignment at CM002457.1:1001215..1003034+ (Nannochloropsis gaditana)
ATGAAAGGCCATCGAATGTGCACATGACGTGTCCGAGGCCGCGTCTCCGT
GAGGTCGGACCCCATTTCTGGTCATTACATCGGGCGCAGGGAAGCTTCCT
GGCCTCGGCGGCTACGAGGGCCGGGGCGAGATCCCGCGAGGGGCATCCGC
TCGTCCGGTGTAGCAACTTTTGTGTGCGAGCATCGCGACCGTCGCCTGGC
AGTCTGCTCACATGACCATGAACCTCCAGGGCGGAGTATCGCACACAGAC
AGGgaccgtggacgaggaagggaagggggcggtgaAGTGCCAAGACTCGT
CTTTTCGCCCTTAGCCCGCTCTTGAACAAAGTAGTACTTGTGCTGCATAG
CGCCCGCTCGATAGGCTGAGTTTCCTGAGGAATTGAGGTAAATTTGGCTT
CTATATTTGCATACTATTTCTGCATGTTATCTTTCATTTCTCTGTGTCTT
GCTTGCTGGCTGACTGTGGATTTGGTGTCATCCCTAATTCGATCGAGTAG
GACTCGTGGCGGATATGAGTGTCTGTACCTCCCGGTTGAGATGTCTCTTT
TCCGATCATACATTGTTGGTGACGCCTAACCTGACTTCAAAAGACATTAT
CAATTGCTTTTTTAAAGCTGGAATTATCAAGTGACTGAAGAGTTGGAGAG
AGATGCCTCTTACCCGTTGATCATGCCAAGAAAATTTCCACACGTTCCAT
CTCTCGACGATCACACTTCAGGACAGAAAGTTTTCCACTTAGCTTGCCGA
ACATGAATGCGGACGTACAAAATCAAGAGCTTATGCGCCTATTCCGCATC
CGGAAGACTGTTCTCAAGATGCTGACGAAGCGTGGATACAACGTGTTAGA
ACAGACCCTGGAAGCTACCTTCAGTTCCTTTTCTGACGATGTGGCGCGGA
TTTCTTTGGAAAACAACAACTGCACGGCCCGTGAGGCCTGCACCATCAAT
GTGGGGAAGATTGATGACGCCGCGGACGTGGTTTTTGTCTTCTTTTCAGA
CGATGAGAAGGTAAACGTGAAGGGTGCTGTCGAGGAAAAGTAGTTTCGTT
TGATCCCTGATCATGGCATGCTTGCAATACTTTACAGGGATTAGGCACGA
AGCCCATTCAAAAATACGTAGAACGCCTGTTGCAGGCAGGATCAAGCTGC
GGAATTATCATCTACAGAAACAATATCACGGCAATTGCCAAgaagctcct
ccagcccggAGCCATTCCGGGAGTCAAGCTCGAAGTCTTCAAGGTAAGGG
GAGCAGTGAGGTATGAAATGGGACTTGAGTCTGTGCAAATCTATGTTGGT
GTACTCTTACTGCGGGAATGCGCGGAAACCCGGTCGATGTAGGTGTCCTC
GTCTGAGACCTGGAGCACCTTCTTCCTAATGCAGGGCACAGACAAATAAC
CGACTCCCTACACCTTTCTCACAATTTTTAATCACTGAAAGGAATCGGAA
CTTCTGGTTGATATCACCGAGCACACTTTGGTCCCTGAACACGTTGTCCT
GACGCCTGATCAGAAGGCAGAGGTCCTAGGTCGGTACAAGCTGAAGGAAA
GCCAGTTGCCGAAGATCCAATCAGCGGATCCAATCGCTCGCTATTATGGA
TTGCAGCGAGGGACTGTTGTGAAAATTATTCGGCTGTCAGAGACTGCGGG
TCGCTACATAACCTATCGTGTCTGCGTGTAAGAGCTCGTGCCTAGGGTCG
AAGGCAGCGTCCTAGAGTGCGAATGCTGACacaagagagaggggtgtATT
TTTGCAAAGTAAACGTCCCGTAATTTAAAGGATAGCGTTGTAAAGCATGA
TACATTTCGTTTCTTTTCAA back to topCoding sequence (CDS) from alignment at CM002457.1:1001215..1003034+ >rna1586 ID=rna1586|Name=rna1586|organism=Nannochloropsis gaditana|type=CDS|length=1962bp|location=Sequence derived from alignment at CM002457.1:1001215..1003034+ (Nannochloropsis gaditana)
ATGAATGCGGACGTACAAAATCAAGAGCTTATGCGCCTATTCCGCATCCG
GAAGACTGTTCTCAAGATGCTGACGAAGCGTGGATACAACGTGTTAGAAC
AGACCCTGGAAGCTACCTTCAGTTCCTTTTCTGACGATGTGGCGCGGATT
TCTTTGGAAAACAACAACTGCACGGCCCGTGAGGCCTGCACCATCAATGT
GGGGAAGATTGATGACGCCGCGGACGTGGTTTTTGTCTTCTTTTCAGACG
ATGAGAAGGGATTAGGCACGAAGCCCATTCAAAAATACGTAGAACGCCTG
TTGCAGGCAGGATCAAGCTGCGGAATTATCATCTACAGAAACAATATCAC
GGCAATTGCCAAgaagctcctccagcccggAGCCATTCCGGGAGTCAAGC
TCGAAGTCTTCAAGGAATCGGAACTTCTGGTTGATATCACCGAGCACACT
TTGGTCCCTGAACACGTTGTCCTGACGCCTGATCAGAAGGCAGAGGTCCT
AGGTCGGTACAAGCTGAAGGAAAGCCAGTTGCCGAAGATCCAATCAGCGG
ATCCAATCGCTCGCTATTATGGATTGCAGCGAGGGACTGTTGTGAAAATT
ATTCGGCTGTCAGAGACTGCGGGTCGCTACATAACCTATCGTGTCTGCGT
GTAAATGAATGCGGACGTACAAAATCAAGAGCTTATGCGCCTATTCCGCA
TCCGGAAGACTGTTCTCAAGATGCTGACGAAGCGTGGATACAACGTGTTA
GAACAGACCCTGGAAGCTACCTTCAGTTCCTTTTCTGACGATGTGGCGCG
GATTTCTTTGGAAAACAACAACTGCACGGCCCGTGAGGCCTGCACCATCA
ATGTGGGGAAGATTGATGACGCCGCGGACGTGGTTTTTGTCTTCTTTTCA
GACGATGAGAAGGGATTAGGCACGAAGCCCATTCAAAAATACGTAGAACG
CCTGTTGCAGGCAGGATCAAGCTGCGGAATTATCATCTACAGAAACAATA
TCACGGCAATTGCCAAgaagctcctccagcccggAGCCATTCCGGGAGTC
AAGCTCGAAGTCTTCAAGGAATCGGAACTTCTGGTTGATATCACCGAGCA
CACTTTGGTCCCTGAACACGTTGTCCTGACGCCTGATCAGAAGGCAGAGG
TCCTAGGTCGGTACAAGCTGAAGGAAAGCCAGTTGCCGAAGATCCAATCA
GCGGATCCAATCGCTCGCTATTATGGATTGCAGCGAGGGACTGTTGTGAA
AATTATTCGGCTGTCAGAGACTGCGGGTCGCTACATAACCTATCGTGTCT
GCGTGTAAATGAATGCGGACGTACAAAATCAAGAGCTTATGCGCCTATTC
CGCATCCGGAAGACTGTTCTCAAGATGCTGACGAAGCGTGGATACAACGT
GTTAGAACAGACCCTGGAAGCTACCTTCAGTTCCTTTTCTGACGATGTGG
CGCGGATTTCTTTGGAAAACAACAACTGCACGGCCCGTGAGGCCTGCACC
ATCAATGTGGGGAAGATTGATGACGCCGCGGACGTGGTTTTTGTCTTCTT
TTCAGACGATGAGAAGGGATTAGGCACGAAGCCCATTCAAAAATACGTAG
AACGCCTGTTGCAGGCAGGATCAAGCTGCGGAATTATCATCTACAGAAAC
AATATCACGGCAATTGCCAAgaagctcctccagcccggAGCCATTCCGGG
AGTCAAGCTCGAAGTCTTCAAGGAATCGGAACTTCTGGTTGATATCACCG
AGCACACTTTGGTCCCTGAACACGTTGTCCTGACGCCTGATCAGAAGGCA
GAGGTCCTAGGTCGGTACAAGCTGAAGGAAAGCCAGTTGCCGAAGATCCA
ATCAGCGGATCCAATCGCTCGCTATTATGGATTGCAGCGAGGGACTGTTG
TGAAAATTATTCGGCTGTCAGAGACTGCGGGTCGCTACATAACCTATCGT
GTCTGCGTGTAA back to top
|