rna1582, rna1582 (mRNA) Nannochloropsis gaditana

Overview
Namerna1582
Unique Namerna1582
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length747
Alignment locationCM002457.1:988610..990232 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100024g55.4324.mrna
Orig protein idgnl|cribi|Naga_100024g55.4324
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:988610..990232 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100024g55gene1521Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1582rna1582-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29066.1cds1578Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1582 ID=rna1582|Name=rna1582|organism=Nannochloropsis gaditana|type=mRNA|length=747bp
ATGTCTTTCGATACATGCAAACAGATGCACTTCAGTGGTCGTTGCATTGC
TGCATTGGCCACGTCTTCCCTCGCGTTGAGCAACTCTATCTCTCTTGCCC
GCTCTCGCTCCTCGCCCGCCTTCGTCAGCACCCGTGCTGTCTCTTTGCTC
GCCACGCAACTTTCGGCCTCGTCATCTTCGCACAGCCGTCACTTGTCTAC
CAAGATGAGTGCCGCTTCTAGCCTCTACGACTTCACCGTCAAGGATGCGA
ATGGACAGGATTTTAACCTCGGGGAGTTGAAAGATAAAAAGGCAGTCCTG
GTCGTGAACGTCGCCTCTCAATGCGGCTTCACCCCTCAGTACAAGGGCCT
CCAGGAGCTGCAGGACAAGTATGGGCCCAAGGGATTCACGGTCCTTGCCT
TTCCCTGTAACCAATTTGGGGGTCAGGAACCCGATGCCGCCCCTCAAGTC
TGCCAGTTCGCCAAGGACCGTTTTAAGGCAACCTTCCCCATCATGGACAA
GGTGGACGTCAACGGCAACAACGCTGCGCCTGTCTTCAATTTTTTGAAGG
AGCAGCAACCTGGCTTCCTTACCAACGCGGTCAAATGGAACTTCTCCAAG
TGGCTGATCAAGGACGGCAAACCCATCAAGCGTTACGGCCCTCAAGAGAA
GCCCGAAAGCATCGAGAAGGACGTCCCACAGGGGCTCCGTCTGTGCCCTC
TCAACGGGGTTGGAGAGGGCGGAGGAATCACGCAGATGGACGGTTAG
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protein sequence of rna1582

>rna1582-protein ID=rna1582-protein|Name=rna1582|organism=Nannochloropsis gaditana|type=polypeptide|length=540bp
MSSSSVAAGVSCPVCGAQIGSPATCCKILKDWSNESKMLYYFEAVKSDEC
NVNPEVRRFWADAIVHYLADRKRSFVFNGEEIKLAYTRRSVLSTLCLPRI
LSELDTTKETCKLSSLTPCVGRVEAPLAARLWRTSWYLTEAGARFSAWTV
RTLVVKPVRRAWSYAIGHDGDFDDDTEMREAEDEQIASLRASRVHVGLCE
AAAELVTAYFLSRPDLERTVSLSEGGDEGAGDVQGDGGPGGQGGATAGMC
SFLHVCRRAASSSPTPSASPASKILRTCSRVDGEVLATVMVRLKLAVQEG
SYLKILGRGGGAGSLTAADKTVLDFRIRVNKIDRMLGAQEAQMVESKLRA
AGLHSRGLSAQALVEWRRHKKLATSVEKLRGAMVNMLSIYHSIEGQHADM
QVFAGLRGGNLALKQQKTAAKAMGLGGVEDVEEALREAQELIDESDELGK
ILSSPLMNREGPTEDIKEEELLKELEALAIAEAEGQRDVDIEKDATERRR
SAKEAEAAVSYDLPDISHLSPIVGKTETVARSSSRVRVVK
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mRNA from alignment at CM002457.1:988610..990232+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1582 ID=rna1582|Name=rna1582|organism=Nannochloropsis gaditana|type=mRNA|length=1623bp|location=Sequence derived from alignment at CM002457.1:988610..990232+ (Nannochloropsis gaditana)
ATGTCTTCAAGTTCAGTGGCAGCCGGGGTGTCTTGTCCGGTTTGCGGAGC
CCAGATTGGATCTCCTGCAACGTGTTGCAAGATCCTGAAGGACTGGAGCA
ACGAAAGCAAAATGCTGTATTATTTCGAAGCTGTCAAGAGCGATGAATGT
AATGTCAATCCTGAAGTACGCCGGTTCTGGGCTGATGCGATAGTCCACTA
CCTCGCCGATCGGAAGCGCTCTTTCGTCTTCAATGGGGAAGAGATTAAAC
TTGCTTACACCCGACGCAGCGTTCTCTCCACCTTATGCCTGCCTCGAATC
CTTTCTGAATTGGATACGACGAAAGAAACGTGCAAGCTGTCAAGTCTCAC
ACCTTGTGTTGGCCGTGTAGAGGCCCCTCTTGCTGCAAGGCTATGGCGTA
CATCTTGGTACTTGACCGAGGCAGGCGCAAGATTCAGTGCATGGACGGTA
CGGACATTAGTCGTTAAACCAGTCCGGAGAGCGTGGTCCTATGCAATCGG
ACACGACGGCGACTTTGATGACGATACAGAGAtgagagaggcggaggacg
agcaaaTCGCCTCTCTGAGAGCCTCGCGCGTCCATGTGGGCTTGTGCGAG
GCAGCGGCTGAACTCGTGACTGCGTATTTTCTTAGCCGGCCAGATCTCGA
GCGGACTGTAAGTTTGAGTGAAGGTGGCGACGAAGGGGCAGGCGACGTCC
AGGGTGATGGGGGTcccggcgggcagggaggggcgacggCCGGGATGTGC
TCTTTCCTGCACGTGTGTCGGAGGGCtgcgtcctcgtcgccgaCGCCCTC
GGCCTCTCCGGCGTCCAAAATCCTTCGAACGTGTTCGCGCGTAGATGGCG
AGGTTCTGGCCACGGTCATGGTACGGCTAAAACTGGCAGTGCAAGAAGGC
AGCTACCTCAAGATTCTCGGACGTGGGGGCGGCGCGGGCTCGCTAACAGC
AGCGGACAAGACGGTTCTCGACTTCCGTATTCGGGTGAACAAGATAGACA
GGATGCTGGGCGCACAGGAAGCACAGATGGTAGAGAGCAAGTTGCGGGCA
GCAGGATTGCATTCGAGGGGGCTGAGCGCCCAGGCACTCGTCGAGTGGCG
ACGGCATAAGAAGCTAGCAACGTCTGTAGAAAAGCTCCGGGGGGCAATGG
TGAATATGCTTTCTATCTATCACTCTATCGAAGGACAACATGCTGACATG
CAGGTCTTTGCAGGCTTGCGAGGCGGAAATTTGGCTCTGAAGCAGCAAAA
AACCGCCGCGAAGGCGATGGGactgggaggggtggaggatgtggaggagg
ccctcCGGGAAGCACAGGAGCTCATTGATGAGTCGGATGAGCTGGGTAAA
ATCTTATCCAGCCCCTTAATGAATCGAGAAGGACCAACGGAAGATatcaa
ggaggaagagctcttGAAGGAGCTCGAGGCCTTGGCAATAGCTGAGGCCG
AAGGCCAGCGCGATGTCGACATCGAGAAGGATGCGacggagagaaggagg
agtgcaAAAGAGGCGGAAGCAGCGGTGTCGTACGATTTACCCGACATCAG
CCACCTTTCTCCAATTGTCGGAAAAACAGAGACTGTGGCAAGGTCATCCT
CACGGGTGCGTGTGGTCAAATAG
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Coding sequence (CDS) from alignment at CM002457.1:988610..990232+

>rna1582 ID=rna1582|Name=rna1582|organism=Nannochloropsis gaditana|type=CDS|length=1623bp|location=Sequence derived from alignment at CM002457.1:988610..990232+ (Nannochloropsis gaditana)
ATGTCTTCAAGTTCAGTGGCAGCCGGGGTGTCTTGTCCGGTTTGCGGAGC
CCAGATTGGATCTCCTGCAACGTGTTGCAAGATCCTGAAGGACTGGAGCA
ACGAAAGCAAAATGCTGTATTATTTCGAAGCTGTCAAGAGCGATGAATGT
AATGTCAATCCTGAAGTACGCCGGTTCTGGGCTGATGCGATAGTCCACTA
CCTCGCCGATCGGAAGCGCTCTTTCGTCTTCAATGGGGAAGAGATTAAAC
TTGCTTACACCCGACGCAGCGTTCTCTCCACCTTATGCCTGCCTCGAATC
CTTTCTGAATTGGATACGACGAAAGAAACGTGCAAGCTGTCAAGTCTCAC
ACCTTGTGTTGGCCGTGTAGAGGCCCCTCTTGCTGCAAGGCTATGGCGTA
CATCTTGGTACTTGACCGAGGCAGGCGCAAGATTCAGTGCATGGACGGTA
CGGACATTAGTCGTTAAACCAGTCCGGAGAGCGTGGTCCTATGCAATCGG
ACACGACGGCGACTTTGATGACGATACAGAGAtgagagaggcggaggacg
agcaaaTCGCCTCTCTGAGAGCCTCGCGCGTCCATGTGGGCTTGTGCGAG
GCAGCGGCTGAACTCGTGACTGCGTATTTTCTTAGCCGGCCAGATCTCGA
GCGGACTGTAAGTTTGAGTGAAGGTGGCGACGAAGGGGCAGGCGACGTCC
AGGGTGATGGGGGTcccggcgggcagggaggggcgacggCCGGGATGTGC
TCTTTCCTGCACGTGTGTCGGAGGGCtgcgtcctcgtcgccgaCGCCCTC
GGCCTCTCCGGCGTCCAAAATCCTTCGAACGTGTTCGCGCGTAGATGGCG
AGGTTCTGGCCACGGTCATGGTACGGCTAAAACTGGCAGTGCAAGAAGGC
AGCTACCTCAAGATTCTCGGACGTGGGGGCGGCGCGGGCTCGCTAACAGC
AGCGGACAAGACGGTTCTCGACTTCCGTATTCGGGTGAACAAGATAGACA
GGATGCTGGGCGCACAGGAAGCACAGATGGTAGAGAGCAAGTTGCGGGCA
GCAGGATTGCATTCGAGGGGGCTGAGCGCCCAGGCACTCGTCGAGTGGCG
ACGGCATAAGAAGCTAGCAACGTCTGTAGAAAAGCTCCGGGGGGCAATGG
TGAATATGCTTTCTATCTATCACTCTATCGAAGGACAACATGCTGACATG
CAGGTCTTTGCAGGCTTGCGAGGCGGAAATTTGGCTCTGAAGCAGCAAAA
AACCGCCGCGAAGGCGATGGGactgggaggggtggaggatgtggaggagg
ccctcCGGGAAGCACAGGAGCTCATTGATGAGTCGGATGAGCTGGGTAAA
ATCTTATCCAGCCCCTTAATGAATCGAGAAGGACCAACGGAAGATatcaa
ggaggaagagctcttGAAGGAGCTCGAGGCCTTGGCAATAGCTGAGGCCG
AAGGCCAGCGCGATGTCGACATCGAGAAGGATGCGacggagagaaggagg
agtgcaAAAGAGGCGGAAGCAGCGGTGTCGTACGATTTACCCGACATCAG
CCACCTTTCTCCAATTGTCGGAAAAACAGAGACTGTGGCAAGGTCATCCT
CACGGGTGCGTGTGGTCAAATAG
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Synonyms
Publications