EWM29066.1, cds1578 (CDS) Nannochloropsis gaditana

Overview
NameEWM29066.1
Unique Namecds1578
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:988610..990232 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29066.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100024g55.4324.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:988610..990232 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
GO:0007034vacuolar transport
Vocabulary: INTERPRO
TermDefinition
IPR005024Snf7_fam
Homology
BLAST of EWM29066.1 vs. NCBI_GenBank
Match: gi|585111585|gb|EWM29066.1| (hypothetical protein Naga_100024g55 [Nannochloropsis gaditana])

HSP 1 Score: 1097.42 bits (2837), Expect = 0.000e+0
Identity = 540/540 (100.00%), Postives = 540/540 (100.00%), Query Frame = 0
Query:    1 MSSSSVAAGVSCPVCGAQIGSPATCCKILKDWSNESKMLYYFEAVKSDECNVNPEVRRFWADAIVHYLADRKRSFVFNGEEIKLAYTRRSVLSTLCLPRILSELDTTKETCKLSSLTPCVGRVEAPLAARLWRTSWYLTEAGARFSAWTVRTLVVKPVRRAWSYAIGHDGDFDDDTEMREAEDEQIASLRASRVHVGLCEAAAELVTAYFLSRPDLERTVSLSEGGDEGAGDVQGDGGPGGQGGATAGMCSFLHVCRRAASSSPTPSASPASKILRTCSRVDGEVLATVMVRLKLAVQEGSYLKILGRGGGAGSLTAADKTVLDFRIRVNKIDRMLGAQEAQMVESKLRAAGLHSRGLSAQALVEWRRHKKLATSVEKLRGAMVNMLSIYHSIEGQHADMQVFAGLRGGNLALKQQKTAAKAMGLGGVEDVEEALREAQELIDESDELGKILSSPLMNREGPTEDIKEEELLKELEALAIAEAEGQRDVDIEKDATERRRSAKEAEAAVSYDLPDISHLSPIVGKTETVARSSSRVRVVK 540
            MSSSSVAAGVSCPVCGAQIGSPATCCKILKDWSNESKMLYYFEAVKSDECNVNPEVRRFWADAIVHYLADRKRSFVFNGEEIKLAYTRRSVLSTLCLPRILSELDTTKETCKLSSLTPCVGRVEAPLAARLWRTSWYLTEAGARFSAWTVRTLVVKPVRRAWSYAIGHDGDFDDDTEMREAEDEQIASLRASRVHVGLCEAAAELVTAYFLSRPDLERTVSLSEGGDEGAGDVQGDGGPGGQGGATAGMCSFLHVCRRAASSSPTPSASPASKILRTCSRVDGEVLATVMVRLKLAVQEGSYLKILGRGGGAGSLTAADKTVLDFRIRVNKIDRMLGAQEAQMVESKLRAAGLHSRGLSAQALVEWRRHKKLATSVEKLRGAMVNMLSIYHSIEGQHADMQVFAGLRGGNLALKQQKTAAKAMGLGGVEDVEEALREAQELIDESDELGKILSSPLMNREGPTEDIKEEELLKELEALAIAEAEGQRDVDIEKDATERRRSAKEAEAAVSYDLPDISHLSPIVGKTETVARSSSRVRVVK
Sbjct:    1 MSSSSVAAGVSCPVCGAQIGSPATCCKILKDWSNESKMLYYFEAVKSDECNVNPEVRRFWADAIVHYLADRKRSFVFNGEEIKLAYTRRSVLSTLCLPRILSELDTTKETCKLSSLTPCVGRVEAPLAARLWRTSWYLTEAGARFSAWTVRTLVVKPVRRAWSYAIGHDGDFDDDTEMREAEDEQIASLRASRVHVGLCEAAAELVTAYFLSRPDLERTVSLSEGGDEGAGDVQGDGGPGGQGGATAGMCSFLHVCRRAASSSPTPSASPASKILRTCSRVDGEVLATVMVRLKLAVQEGSYLKILGRGGGAGSLTAADKTVLDFRIRVNKIDRMLGAQEAQMVESKLRAAGLHSRGLSAQALVEWRRHKKLATSVEKLRGAMVNMLSIYHSIEGQHADMQVFAGLRGGNLALKQQKTAAKAMGLGGVEDVEEALREAQELIDESDELGKILSSPLMNREGPTEDIKEEELLKELEALAIAEAEGQRDVDIEKDATERRRSAKEAEAAVSYDLPDISHLSPIVGKTETVARSSSRVRVVK 540          
BLAST of EWM29066.1 vs. NCBI_GenBank
Match: gi|1173961993|gb|OQS07836.1| (hypothetical protein THRCLA_00171 [Thraustotheca clavata])

HSP 1 Score: 76.2554 bits (186), Expect = 3.727e-11
Identity = 53/208 (25.48%), Postives = 100/208 (48.08%), Query Frame = 0
Query:  251 SFLHVCRRAASSSPTPSASPASKILRTCSRVDGEVLATVMVRLKLAVQEGSYLKILGRGGGAGSLTAADKTVLDFRIRVNKIDRMLGAQEAQMVESKLRAAGLHSRGLSAQALVEWRRHKKLATSVEKLRGAMVNMLSIYHSIEGQHADMQVFAGLRGGNLALKQQKTAAKAMGLGGVEDVEEALREAQELIDESDELGKILSSPLMN 458
            SFL +CR A+S++    +    + L      + + +A  +V  K A    S +K  G+   +  +   D T+L     ++KI++ L   + ++   +++A     RG + +A+  WR  K + T +E  + A++N++S  H +   H +     G +   LA +  +     + L  VE VEEAL    E+++E  ++ +ILS   MN
Sbjct:  175 SFLSLCRSASSTA----SCHVRRFLEELPPEELQWIAIHLVYTKKAAMTQSAIKFFGKDAKSIEVNECDNTMLLLNHTISKIEKALTTLQTEINTMQIKAIDSKKRGATKEAINFWRHVKLMQTELENRQNALLNLISTKHKLRTMHVNAWTVEGYK---LATESLRITRDTLHL-SVESVEEALSSWNEVVEEQTQIEEILSKDTMN 374          
BLAST of EWM29066.1 vs. NCBI_GenBank
Match: gi|669155402|ref|XP_008613263.1| (hypothetical protein SDRG_09127 [Saprolegnia diclina VS20] >gi|530734898|gb|EQC33140.1| hypothetical protein SDRG_09127 [Saprolegnia diclina VS20])

HSP 1 Score: 67.0106 bits (162), Expect = 3.650e-8
Identity = 82/335 (24.48%), Postives = 144/335 (42.99%), Query Frame = 0
Query:  148 WTVRTLVVKPVRRAWSYAIGHDGDFDDDTEMREAEDEQIASLRASRVHVGLCEAAAELVTAYFLSRPD-LERTVSLSEGGDEGAGDVQGDGGPGGQGGATAGMCSFLHVCRRAASSSPTPSASPASKILRTCSRVDGEVLATVMVRLKLAVQEGSYLKILGRGGGAGSLTAADKTVLDFRIRVNKIDRMLGAQEAQMVESKLRAAGLHSRGLSAQALVEWRRHKKLATSVEKLRGAMVNMLSIYHSIEGQHADMQVFAGLRGGNLALKQQKTAAKAMGLGGVEDVEEALREAQELIDESDELGKILSSPLMNREGPTEDIKEEELLKELEALAIA 481
            W V   V +P+R  W+ ++ H    +DD+  R + D    SL           + A  V AY LS  + L R   L               GP     AT    +F  +CR A+       ASP ++ L   +  + + +A  +V  K AV +   +K++     A ++   D+TVL     ++ ++  L   +A++     +A     RG +A+AL  WR  K L   V++ + A+VN+LS  H +    A   +   L G  LA +  ++   ++ L   + V E L +  +++DE   +  +L++          D   +E   E+E L++A
Sbjct:  115 WFVDVAVKRPMRWGWA-SLWHAIAAEDDS--RLSHDSPYLSLPT-------LASLATHVHAYALSTHEPLARVFCL---------------GPDHVTCATKDH-AFHMLCRAASRHD---EASPPAQFLAAVAADELDYIAFYLVYTKRAVMQAGLIKLVVLDATADAIGDGDRTVLLLYHTISTVETALATLQARVAAVAEKALEAKRRGSAAEALALWRHAKTLQADVDQRQNALVNLLSTKHQLGAMSAQATI---LEGYKLAAESLRSVRASLHL-STDAVAETLADWSDVMDEQRHMDDLLTA--------HADYNVDEAALEMELLSLA 408          
BLAST of EWM29066.1 vs. NCBI_GenBank
Match: gi|1032643148|gb|OAQ24495.1| (SNF7 family protein [Mortierella elongata AG-77])

HSP 1 Score: 63.5438 bits (153), Expect = 5.783e-8
Identity = 50/148 (33.78%), Postives = 79/148 (53.38%), Query Frame = 0
Query:  310 GGAGSLTAADKTVLDFRIRVNKIDRMLGAQEAQMVESKLRAAGLH-SRGLSAQALVEWRRHKKLATSVEKLRGAMVNMLSIYHSIEGQHADMQVFAGLRGGNLALKQQKTAAKAMGLGGVEDVEEALREAQELIDESDELGKILSSPL 456
            G A  +TA D+ +LD +++ +K+ R    +   +VE +LR A  H ++G   +AL+  RR K   + +EK    M N+  +  SIE    + QVFAGL  GN  LK+     K M L    DVE+ + E  + I   +E+ ++LS+ L
Sbjct:    8 GAAAKITAHDRAILDLKVQRDKL-RQYNKRLEGVVEKELRLAKGHLAKGEKQRALLALRRKKFQESLLEKTVLQMTNLDELTMSIEQAMVEKQVFAGLAAGNQVLKE---LHKEMSLA---DVEKLMDETADSIAYQNEIDELLSTRL 148          
BLAST of EWM29066.1 vs. NCBI_GenBank
Match: gi|673015392|ref|XP_008861657.1| (hypothetical protein H310_00596 [Aphanomyces invadans] >gi|574483255|gb|ETW10246.1| hypothetical protein H310_00596 [Aphanomyces invadans])

HSP 1 Score: 65.4698 bits (158), Expect = 1.123e-7
Identity = 105/470 (22.34%), Postives = 179/470 (38.09%), Query Frame = 0
Query:   28 ILKDWSNESKMLYYFEAVKSDECNVNPEVRRFWADAIVHYLADRKR----------SFVFNGEEIKLAYTRRSVLST-LCLPRILSELDTTKETCKLSSLTPCVGRVEAPLAARLWRTSWYLTEAGARFSAWTVRTLVVKPVRRAWSYAIGHDGDFDDDTEMREAEDEQIASLRASRVHVG------LCEAAAELVTAYFLSRPD-LERTVSLSEGGDEGAGDVQGDGGPGGQGGATAGMCSFLHVCRRAASSSPTPSASPASKILRTCSRVDGEVLATVMVRLKLAVQEGSYLKILGRGGGAGSLTAADKTVLDFRIRVNKIDRMLGAQEAQMVESKLRAAGLHSRGLSAQALVEWRRHKKLATSVEKLRGAMVNMLSIYHSIEGQHADMQVFAGLRGGNLALKQQKTAAKAMGLGGVEDVEEALREAQELIDESDELGKILSSPLMNREGPTEDIKEEELLKELEALA 479
              ++W ++ +M    EA+ S     + ++   W  A++  L  R            S +   E +   + R+ V    + L  +LS +   K+   L        +V  P                     W  RT VV P R  W     H              DE   S  A R+  G      + +  A  +  + +S  +  ERT  LS          Q D    G   +    CSF  +C R  +S     A P+  IL+  +  +   +A  +   K AV  G  LKI  RG     +TA D+++L  +  +  ++  +   +A+M E+K +A           ALV  R  K L  S+ + +  ++N+L   H +   H    V  G +  + ++   +    ++GL     V++A+ E Q + DE+ ++  +LSS       P     ++ L  ELEAL+
Sbjct:    3 FFEEWDDDDRM----EALFSSSAIFDAKMLHAWKPAVLWTLRGRATDNSKNSALTPSLLIFPESLARRFVRKGVEPVPVVLNHVLSHMIQDKDLIHLEEFQAMCEQVSLP--------------------RWLFRTAVVTPAR--WGLHSLHSL----------WNDESSTSSAARRIPPGPYLPMEVLKTIAHAIVDFVMSELEPTERTFCLS----------QNDHATCGPRLS----CSFHALCLRVGASISDEMAIPS--ILKDLAPTEFAWIAKYLAWSKQAVIRGDLLKI-HRGQSPALVTAGDESLLVLQHMIATLEVSMAKLQAKMDETKAKAVARKRANNLTDALVYLRHSKTLGDSLAQRQAGLLNLLQTEHQLRDMHVQALVVDGYKVASASMHHVR---DSLGLTA-NAVDDAVAEWQIVADEASQIDVLLSS-----TAPGVAFDDDALAAELEALS 410          
The following BLAST results are available for this feature:
BLAST of EWM29066.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 5
Match NameE-valueIdentityDescription
gi|585111585|gb|EWM29066.1|0.000e+0100.00hypothetical protein Naga_100024g55 [Nannochlorops... [more]
gi|1173961993|gb|OQS07836.1|3.727e-1125.48hypothetical protein THRCLA_00171 [Thraustotheca c... [more]
gi|669155402|ref|XP_008613263.1|3.650e-824.48hypothetical protein SDRG_09127 [Saprolegnia dicli... [more]
gi|1032643148|gb|OAQ24495.1|5.783e-833.78SNF7 family protein [Mortierella elongata AG-77][more]
gi|673015392|ref|XP_008861657.1|1.123e-722.34hypothetical protein H310_00596 [Aphanomyces invad... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1582rna1582Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications