|
|
Properties
| Property Name | Value |
|---|
| Product | rab11 family gtpase |
| Orig transcript id | gnl|cribi|Naga_100024g60.4320.mrna |
| Orig protein id | gnl|cribi|Naga_100024g60.4320 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002457.1 | supercontig | CM002457.1:974127..975437 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna1577 ID=rna1577|Name=rna1577|organism=Nannochloropsis gaditana|type=mRNA|length=1734bp
ATGCACAGTAAATACATGGCTTCATTAAAGTATAAAGATGCGGCTTTCAC
TGTGGAAAGTCCTGATGTGACTTACACGGGGGATGAAATACTGGCAAAAT
ATACGTACGAGACTGTTGTTATCGAGGGCACAAAGGCAATACCTACCAAG
ACCCTCTTCACGTTCAAAACTAAACGGCACGTGCCCAAGACGGGCTTGAT
GCTCGTTGGATGGGGCGGAAACAACGGCACCACCACCACTGCGGGCATCC
TGGCGAACCGGATGAAATTATCATGGCGCACAAAGGAAGGCGAGCGACAC
GCCAATTACTTCGGTTCTTTGACTCAGGCCTCAACGGTGCGCCTCGGAAA
TGACAAGTTTGGTAACTCTGTGTACGTGCCATTCCACCGGCTCCTCCCCA
TGCTGCATCCCAATGACCTGGTGATAGGCGGGTGGGACATCTCCAAGCAG
GATCTGGGAGATGCCATGCGGCGGGCGCAAGTGCTGGACGCGGGATTGCA
GGATCAGCTTTATCCGCACATGAAGGCTTTGCAGCCCTTGCCCTCCATCT
ATTTCCCGGACTTCATCGCCGCCAACCAAGCCGACCGAGCGGACAACGTC
TTGACGGGCTCGAAGCAAGAGCAATTGGACGCGGTGCGTGCGCACATCCG
TGACTTCAAGGCCTCCCACAGCTTGGAGAAGGTGATAGTTCTGTGGACCG
CCAACACGGAGCGGTTCGCCGCGGTGGAGGAAGGAAACAACGACACGGCC
GAAAACCTTCTAGCCGCTATCGAGCGGGAGGAGGAAGAGCTCTCCCCCTC
AACCCTCTTCGCGGTGGCATCTATCTTGGAGGGTTGCTCTTACATCAATG
GGTCGCCCCAGAACACATTCGTTCCCGGCGTGATCGACTTGGCTCAGCAA
AGGGGGGTTTATGTAGGCGGCGACGACTTCAAGAGCGGGCAGACGAAGAT
GAAGTCGGTGCTCGTGGACTTTCTCGTCTCCGCGGGCATCAAGCCTACCT
CCATCGTCAGCTACAACCACCTGGGCAACAACGACGGGAAGAACCTGTCG
GCACCGCAAACCTTCCGTTCCAAGGAGATCTCCAAAAGCAACGTGGTGGA
CGACATGGTCGCGTCCAACCGCTTGCTTTACGCGGAAGACGAGCATCCTG
ACCACGTGGTCGTCATCAAGTATGTCCCTTGCGTGGGGGACTCCAAGCGT
GCCATGGACGAGTATACTTCGGAGATATTCATGGGAGGGACCAACACGAT
CGTGATGCACAATACGTGCGAAGACTCGCTCCTTGCTACGCCCCTCATCT
ACGACCTCGTCGTGCTGACCGAGATGGCCGAGCGCATCACCGTGAGAAGG
GAAGGCGAGGGCGACGGTACATTTGAATCCTTTGCCAGCGTGCTGTCGCT
CCTCTCTTACTTGATCAAAGCCCCTCTTGTCCCTCCGGGCACGCCGGTTG
TGAATGCGCTCTTTGCGCAGAGACAATGCATAGTTAACATTTTCCGGGCC
TGCCTGGGACTTCCGCCTGATAACAACATGCTGCTCGAGCATAAATTGGT
GGATTTTATGGGCATGGCAGAAAGTAGGAACCACGGCCCTGTCCTTGTCT
GGCTTGATTTGGTGTTTACAACCAGGCAATTGATACGGGAAAAAAGAGTG
ACAGAAGGCATGAGGTTTGTGCTTTATCTCTTGCTATGCCCATTGACTCT
TGCAGGTCAAGACTCGGGGGTAGATAGTCGCTAG back to topprotein sequence of rna1577 >rna1577-protein ID=rna1577-protein|Name=rna1577|organism=Nannochloropsis gaditana|type=polypeptide|length=326bp
MAGGKDETYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFA
TKSIKAADGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKRVT
FDNVERWLKELREHADQSIVVMLVGNKSDLRHLRTVPTEDAMRFAEENRL
AFIETSALDASGVDTAFHRILTEIHSLLSKKSMAGNDGGFGQAIGVGQKI
ALSSNPPANKATASFQQCCKGKGTEKLSLKISSRTCQHFTRGSREAEHRD
MHSGFLRRHGEVNARLSGFRLHFSSRIVGELVCFAPPQPFLVPASIPSCK
MRCLKAARYGWKKCKRKKGKQGAISC back to topmRNA from alignment at CM002457.1:974127..975437- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna1577 ID=rna1577|Name=rna1577|organism=Nannochloropsis gaditana|type=mRNA|length=1311bp|location=Sequence derived from alignment at CM002457.1:974127..975437- (Nannochloropsis gaditana)
ATGGCGGGCGGCAAGGATGAGACATACGACTACCTTTTCAAAGGTATATT
GATCGAACGGGAGGGGACGGTTTGGCAGAGTAAAGCAGCTAGCTTTGCGC
TTGAATTCTGTTTCCCTAAAATGAGTAAAGTGGGGAATTTTAATTACGGA
TCACACCCTTTTTCTCCTTTTTTTTCACATTTCAGTGGTCCTGATCGGAG
ATTCCGGGGTCGGAAAATCCAACCTTCTATCGCGTTTCACCCGCAACGAG
TTTAACCTAGAGAGTAAAAGCACGATAGGCGTGGAATTTGCCACCAAAAG
TATCAAAGCTGCGGACGGAAAAGTCATCAAGGCTCAGATTTGGGACACAG
CGGGGCAGGTATGTCAATTTGCGAGGAAAGGTTGGTGGGGTGGTGATTCA
GCTCTGATTCGTGTTGCTCGATGCTGCCTTTCCGCCTTTTTGGATGTCCT
TCGTTCTCTCATCCATCCTTCTTTTGCTTGTGTAGGAGCGGTACCGGGCA
ATCACCAGCGCCTACTATCGGGGGGCCGTCGGGGCCCTCCTGGTTTACGA
TATCTCCAAGCGCGTCACCTTCGACAACGTGGAGCGCTGGTTGAAAGAGT
TACGCGAGCATGCAGATCAGTCGATCGTGGTGATGTTGGTTGGCAATAAA
AGCGACTTGCGGCATTTGCGGACAGTGCCGACAGAGGATGCCATGCGTTT
TGCCGAAGAGAACCGCCTGGCCTTTATCGAGACCTCCGCTTTGGACGCGT
CGGGCGTGGACACGGCCTTCCACCGGATCCTCACAGAGATTCATTCCTTG
CTATCCAAAAAGTCCATGGCGGGAAATGACGGGGGGTTCGGGCAGGCCAT
CGGGGTAGGACAGAAGATCGCCTTATCGAGCAACCCGCCCGCGAACAAGG
CGACGGCGAGCTTTCAACAATGCTGTAAGTCGCTTTGATCGCAGCGCGGG
GAGAGATCGATCAAAGATTAATTTGAGATGAACAAAGAGAGGGAAGGGGA
CGGAGAAGCTCAGCTTGAAGATTTCTTCGAGAACTTGCCAGCATTTTACA
CGGGGGAGCAGAGAGGCTGAACATCGCGATATGCATTCGGGGTTTCTTAG
GCGACACGGAGAAGTGAACGCCAGATTGTCTGGCTTCAGGTTGCATTTCT
CGTCTCGAATTGTTGGTGAGTTGGTATGTTTTGCTCCTCCTCAGCCTTTT
TTGGTCCCAGCCTCCATTCCTTCATGTAAAATGCGTTGTCTCAAAGCGGC
CCGTTATGGGTGGAAAAAATGTAAAAGAAAAAAGGGCAAGCAAGGAGCTA
TTTCATGCTGA back to topCoding sequence (CDS) from alignment at CM002457.1:974127..975437- >rna1577 ID=rna1577|Name=rna1577|organism=Nannochloropsis gaditana|type=CDS|length=3924bp|location=Sequence derived from alignment at CM002457.1:974127..975437- (Nannochloropsis gaditana)
AGGGAAGGGGACGGAGAAGCTCAGCTTGAAGATTTCTTCGAGAACTTGCC
AGCATTTTACACGGGGGAGCAGAGAGGCTGAACATCGCGATATGCATTCG
GGGTTTCTTAGGCGACACGGAGAAGTGAACGCCAGATTGTCTGGCTTCAG
GTTGCATTTCTCGTCTCGAATTGTTGGTGAGTTGGTATGTTTTGCTCCTC
CTCAGCCTTTTTTGGTCCCAGCCTCCATTCCTTCATGTAAAATGCGTTGT
CTCAAAGCGGCCCGTTATGGGTGGAAAAAATGTAAAAGAAAAAAGGGCAA
GCAAGGAGCTATTTCATGCTGAGAGCGGTACCGGGCAATCACCAGCGCCT
ACTATCGGGGGGCCGTCGGGGCCCTCCTGGTTTACGATATCTCCAAGCGC
GTCACCTTCGACAACGTGGAGCGCTGGTTGAAAGAGTTACGCGAGCATGC
AGATCAGTCGATCGTGGTGATGTTGGTTGGCAATAAAAGCGACTTGCGGC
ATTTGCGGACAGTGCCGACAGAGGATGCCATGCGTTTTGCCGAAGAGAAC
CGCCTGGCCTTTATCGAGACCTCCGCTTTGGACGCGTCGGGCGTGGACAC
GGCCTTCCACCGGATCCTCACAGAGATTCATTCCTTGCTATCCAAAAAGT
CCATGGCGGGAAATGACGGGGGGTTCGGGCAGGCCATCGGGGTAGGACAG
AAGATCGCCTTATCGAGCAACCCGCCCGCGAACAAGGCGACGGCGAGCTT
TCAACAATGCTGTAATGGTCCTGATCGGAGATTCCGGGGTCGGAAAATCC
AACCTTCTATCGCGTTTCACCCGCAACGAGTTTAACCTAGAGAGTAAAAG
CACGATAGGCGTGGAATTTGCCACCAAAAGTATCAAAGCTGCGGACGGAA
AAGTCATCAAGGCTCAGATTTGGGACACAGCGGGGCAGATGGCGGGCGGC
AAGGATGAGACATACGACTACCTTTTCAAAGAGGGAAGGGGACGGAGAAG
CTCAGCTTGAAGATTTCTTCGAGAACTTGCCAGCATTTTACACGGGGGAG
CAGAGAGGCTGAACATCGCGATATGCATTCGGGGTTTCTTAGGCGACACG
GAGAAGTGAACGCCAGATTGTCTGGCTTCAGGTTGCATTTCTCGTCTCGA
ATTGTTGGTGAGTTGGTATGTTTTGCTCCTCCTCAGCCTTTTTTGGTCCC
AGCCTCCATTCCTTCATGTAAAATGCGTTGTCTCAAAGCGGCCCGTTATG
GGTGGAAAAAATGTAAAAGAAAAAAGGGCAAGCAAGGAGCTATTTCATGC
TGAGAGCGGTACCGGGCAATCACCAGCGCCTACTATCGGGGGGCCGTCGG
GGCCCTCCTGGTTTACGATATCTCCAAGCGCGTCACCTTCGACAACGTGG
AGCGCTGGTTGAAAGAGTTACGCGAGCATGCAGATCAGTCGATCGTGGTG
ATGTTGGTTGGCAATAAAAGCGACTTGCGGCATTTGCGGACAGTGCCGAC
AGAGGATGCCATGCGTTTTGCCGAAGAGAACCGCCTGGCCTTTATCGAGA
CCTCCGCTTTGGACGCGTCGGGCGTGGACACGGCCTTCCACCGGATCCTC
ACAGAGATTCATTCCTTGCTATCCAAAAAGTCCATGGCGGGAAATGACGG
GGGGTTCGGGCAGGCCATCGGGGTAGGACAGAAGATCGCCTTATCGAGCA
ACCCGCCCGCGAACAAGGCGACGGCGAGCTTTCAACAATGCTGTAATGGT
CCTGATCGGAGATTCCGGGGTCGGAAAATCCAACCTTCTATCGCGTTTCA
CCCGCAACGAGTTTAACCTAGAGAGTAAAAGCACGATAGGCGTGGAATTT
GCCACCAAAAGTATCAAAGCTGCGGACGGAAAAGTCATCAAGGCTCAGAT
TTGGGACACAGCGGGGCAGATGGCGGGCGGCAAGGATGAGACATACGACT
ACCTTTTCAAAGAGGGAAGGGGACGGAGAAGCTCAGCTTGAAGATTTCTT
CGAGAACTTGCCAGCATTTTACACGGGGGAGCAGAGAGGCTGAACATCGC
GATATGCATTCGGGGTTTCTTAGGCGACACGGAGAAGTGAACGCCAGATT
GTCTGGCTTCAGGTTGCATTTCTCGTCTCGAATTGTTGGTGAGTTGGTAT
GTTTTGCTCCTCCTCAGCCTTTTTTGGTCCCAGCCTCCATTCCTTCATGT
AAAATGCGTTGTCTCAAAGCGGCCCGTTATGGGTGGAAAAAATGTAAAAG
AAAAAAGGGCAAGCAAGGAGCTATTTCATGCTGAGAGCGGTACCGGGCAA
TCACCAGCGCCTACTATCGGGGGGCCGTCGGGGCCCTCCTGGTTTACGAT
ATCTCCAAGCGCGTCACCTTCGACAACGTGGAGCGCTGGTTGAAAGAGTT
ACGCGAGCATGCAGATCAGTCGATCGTGGTGATGTTGGTTGGCAATAAAA
GCGACTTGCGGCATTTGCGGACAGTGCCGACAGAGGATGCCATGCGTTTT
GCCGAAGAGAACCGCCTGGCCTTTATCGAGACCTCCGCTTTGGACGCGTC
GGGCGTGGACACGGCCTTCCACCGGATCCTCACAGAGATTCATTCCTTGC
TATCCAAAAAGTCCATGGCGGGAAATGACGGGGGGTTCGGGCAGGCCATC
GGGGTAGGACAGAAGATCGCCTTATCGAGCAACCCGCCCGCGAACAAGGC
GACGGCGAGCTTTCAACAATGCTGTAATGGTCCTGATCGGAGATTCCGGG
GTCGGAAAATCCAACCTTCTATCGCGTTTCACCCGCAACGAGTTTAACCT
AGAGAGTAAAAGCACGATAGGCGTGGAATTTGCCACCAAAAGTATCAAAG
CTGCGGACGGAAAAGTCATCAAGGCTCAGATTTGGGACACAGCGGGGCAG
ATGGCGGGCGGCAAGGATGAGACATACGACTACCTTTTCAAAGAGGGAAG
GGGACGGAGAAGCTCAGCTTGAAGATTTCTTCGAGAACTTGCCAGCATTT
TACACGGGGGAGCAGAGAGGCTGAACATCGCGATATGCATTCGGGGTTTC
TTAGGCGACACGGAGAAGTGAACGCCAGATTGTCTGGCTTCAGGTTGCAT
TTCTCGTCTCGAATTGTTGGTGAGTTGGTATGTTTTGCTCCTCCTCAGCC
TTTTTTGGTCCCAGCCTCCATTCCTTCATGTAAAATGCGTTGTCTCAAAG
CGGCCCGTTATGGGTGGAAAAAATGTAAAAGAAAAAAGGGCAAGCAAGGA
GCTATTTCATGCTGAGAGCGGTACCGGGCAATCACCAGCGCCTACTATCG
GGGGGCCGTCGGGGCCCTCCTGGTTTACGATATCTCCAAGCGCGTCACCT
TCGACAACGTGGAGCGCTGGTTGAAAGAGTTACGCGAGCATGCAGATCAG
TCGATCGTGGTGATGTTGGTTGGCAATAAAAGCGACTTGCGGCATTTGCG
GACAGTGCCGACAGAGGATGCCATGCGTTTTGCCGAAGAGAACCGCCTGG
CCTTTATCGAGACCTCCGCTTTGGACGCGTCGGGCGTGGACACGGCCTTC
CACCGGATCCTCACAGAGATTCATTCCTTGCTATCCAAAAAGTCCATGGC
GGGAAATGACGGGGGGTTCGGGCAGGCCATCGGGGTAGGACAGAAGATCG
CCTTATCGAGCAACCCGCCCGCGAACAAGGCGACGGCGAGCTTTCAACAA
TGCTGTAATGGTCCTGATCGGAGATTCCGGGGTCGGAAAATCCAACCTTC
TATCGCGTTTCACCCGCAACGAGTTTAACCTAGAGAGTAAAAGCACGATA
GGCGTGGAATTTGCCACCAAAAGTATCAAAGCTGCGGACGGAAAAGTCAT
CAAGGCTCAGATTTGGGACACAGCGGGGCAGATGGCGGGCGGCAAGGATG
AGACATACGACTACCTTTTCAAAG back to top
|