EWM29062.1, cds1573 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29062.1 vs. NCBI_GenBank
Match: gi|585111581|gb|EWM29062.1| (rab11 family gtpase [Nannochloropsis gaditana]) HSP 1 Score: 676.781 bits (1745), Expect = 0.000e+0 Identity = 326/326 (100.00%), Postives = 326/326 (100.00%), Query Frame = 0
Query: 1 MAGGKDETYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSIKAADGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKRVTFDNVERWLKELREHADQSIVVMLVGNKSDLRHLRTVPTEDAMRFAEENRLAFIETSALDASGVDTAFHRILTEIHSLLSKKSMAGNDGGFGQAIGVGQKIALSSNPPANKATASFQQCCKGKGTEKLSLKISSRTCQHFTRGSREAEHRDMHSGFLRRHGEVNARLSGFRLHFSSRIVGELVCFAPPQPFLVPASIPSCKMRCLKAARYGWKKCKRKKGKQGAISC 326
MAGGKDETYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSIKAADGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKRVTFDNVERWLKELREHADQSIVVMLVGNKSDLRHLRTVPTEDAMRFAEENRLAFIETSALDASGVDTAFHRILTEIHSLLSKKSMAGNDGGFGQAIGVGQKIALSSNPPANKATASFQQCCKGKGTEKLSLKISSRTCQHFTRGSREAEHRDMHSGFLRRHGEVNARLSGFRLHFSSRIVGELVCFAPPQPFLVPASIPSCKMRCLKAARYGWKKCKRKKGKQGAISC
Sbjct: 1 MAGGKDETYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSIKAADGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKRVTFDNVERWLKELREHADQSIVVMLVGNKSDLRHLRTVPTEDAMRFAEENRLAFIETSALDASGVDTAFHRILTEIHSLLSKKSMAGNDGGFGQAIGVGQKIALSSNPPANKATASFQQCCKGKGTEKLSLKISSRTCQHFTRGSREAEHRDMHSGFLRRHGEVNARLSGFRLHFSSRIVGELVCFAPPQPFLVPASIPSCKMRCLKAARYGWKKCKRKKGKQGAISC 326
BLAST of EWM29062.1 vs. NCBI_GenBank
Match: gi|397569796|gb|EJK46971.1| (hypothetical protein THAOC_34340 [Thalassiosira oceanica]) HSP 1 Score: 323.168 bits (827), Expect = 3.210e-108 Identity = 161/222 (72.52%), Postives = 185/222 (83.33%), Query Frame = 0
Query: 1 MAGGKDETYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSIKAADGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKRVTFDNVERWLKELREHADQSIVVMLVGNKSDLRHLRTVPTEDAMRFAEENRLAFIETSALDASGVDTAFHRILTEIHSLLSKKSMAGNDGGFGQAIGVGQKIALSS-NPPANKATASFQQCCKG 221
M DE YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSI+ +GK IKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISK TF+NVERWLKELR+HA+ +IVVMLVGNKSDLRHLR V T++AM F+E++ LAFIETSALDASGVDT+F RILTEI+ L+S+++MA +GG + GQ I+L++ N P + CC+G
Sbjct: 1 MGSRADEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSIQT-EGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKHSTFENVERWLKELRDHAEANIVVMLVGNKSDLRHLRAVETDEAMAFSEQHNLAFIETSALDASGVDTSFQRILTEIYRLMSRRNMAAEEGGNQPQLSTGQTISLNNDNKPR-------RNCCQG 214
BLAST of EWM29062.1 vs. NCBI_GenBank
Match: gi|224005202|ref|XP_002296252.1| (rab-type small GTPase [Thalassiosira pseudonana CCMP1335] >gi|209586284|gb|ACI64969.1| rab-type small GTPase [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 322.783 bits (826), Expect = 4.980e-108 Identity = 162/222 (72.97%), Postives = 183/222 (82.43%), Query Frame = 0
Query: 1 MAGGKDETYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSIKAADGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKRVTFDNVERWLKELREHADQSIVVMLVGNKSDLRHLRTVPTEDAMRFAEENRLAFIETSALDASGVDTAFHRILTEIHSLLSKKSMAGNDGGFGQAIGVGQKIALSS-NPPANKATASFQQCCKG 221
MA DE YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSI+ +GK IKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISK TF+NVERWLKELR+HA+ +IVVMLVGNKSDLRHLR V T++AM F+E++ LAFIETSALDASGVDTAF RILTEI+ L+S+++MA DG + GQ I+L++ N P + CC
Sbjct: 1 MATRADEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSIQT-EGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKHGTFENVERWLKELRDHAEANIVVMLVGNKSDLRHLRAVETDEAMAFSEQHNLAFIETSALDASGVDTAFQRILTEIYRLMSRRNMAAEDGANAPQLSSGQTISLNAENKPR-------RNCCNN 214
BLAST of EWM29062.1 vs. NCBI_GenBank
Match: gi|299473109|emb|CBN78685.1| (Rab11A, RAB family GTPase [Ectocarpus siliculosus]) HSP 1 Score: 321.627 bits (823), Expect = 1.599e-107 Identity = 164/222 (73.87%), Postives = 190/222 (85.59%), Query Frame = 0
Query: 1 MAGGKDETYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSIKAADGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKRVTFDNVERWLKELREHADQSIVVMLVGNKSDLRHLRTVPTEDAMRFAEENRLAFIETSALDASGVDTAFHRILTEIHSLLSKKSMAGNDGGFGQAIGVGQKIALSS--NPPANKATASFQQCCK 220
MAG +DE YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSI+ +GK IKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISK VTF+NVERWLKELR+HA+ +IVVML+GNKSDLRHLRTV E+AM FA+++ LAF+ETSALDASGVD+AF RILTEI+ L+S+K++A N G + G+ IALSS + +N++ +S CK
Sbjct: 1 MAGKEDE-YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSIQT-EGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKHVTFENVERWLKELRDHAEANIVVMLIGNKSDLRHLRTVTHEEAMEFAKKHNLAFLETSALDASGVDSAFQRILTEIYRLMSRKTIAANTAT-GPDLSRGETIALSSARDDASNRSKSSCAGSCK 219
BLAST of EWM29062.1 vs. NCBI_GenBank
Match: gi|1210511857|dbj|GAX29097.1| (Ras-related protein Rab-11A [Fistulifera solaris] >gi|1210524678|dbj|GAX16578.1| Ras-related protein Rab-11A [Fistulifera solaris]) HSP 1 Score: 320.472 bits (820), Expect = 3.144e-107 Identity = 158/214 (73.83%), Postives = 179/214 (83.64%), Query Frame = 0
Query: 6 DETYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSIKAADGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKRVTFDNVERWLKELREHADQSIVVMLVGNKSDLRHLRTVPTEDAMRFAEENRLAFIETSALDASGVDTAFHRILTEIHSLLSKKSMAGNDGGFGQAIGVGQKIALSSNPPANKATASFQQCC 219
DE YDYLFK+VLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSI+A +GK IKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISK TF+NVERWLKELR+HA+ +IVVMLVGNKSDLRHLR V T++AM F+E++ LAFIETSALDASGVDTAF RILTEI+ L+S+++M + G ++ GQ I+LS K CC
Sbjct: 6 DEEYDYLFKIVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSIQA-EGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKHPTFENVERWLKELRDHAEANIVVMLVGNKSDLRHLRAVETDEAMAFSEQHNLAFIETSALDASGVDTAFQRILTEIYRLMSRRNMQAEEAAAGSSLSAGQTISLSDGGKKKKG------CC 212
BLAST of EWM29062.1 vs. NCBI_GenBank
Match: gi|1173942392|gb|OQR91404.1| (Rab11 family GTPase [Thraustotheca clavata]) HSP 1 Score: 319.701 bits (818), Expect = 1.013e-106 Identity = 159/220 (72.27%), Postives = 181/220 (82.27%), Query Frame = 0
Query: 1 MAGGKDETYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSIKAADGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKRVTFDNVERWLKELREHADQSIVVMLVGNKSDLRHLRTVPTEDAMRFAEENRLAFIETSALDASGVDTAFHRILTEIHSLLSKKSMAGNDGGFGQAIGVGQKIALSS-NPPANKATASFQQCC 219
M KD+ YDYLFKVVLIGDSGVGKSNLLSRFTRNEF+LESKSTIGVEFATKSI+A +GK IKAQIWDTAGQERYRAITSAYYRGAVGALLVYDI+K TFDNVERWLKELR+HAD + V+MLVGNKSDLRHLR V TE+AM FAE++ LAF+ETSALDA+GVDTAF RILTEI++L+S+K+M G A+ G KI +++ N A CC
Sbjct: 1 MGSTKDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATKSIQA-EGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKHPTFDNVERWLKELRDHADANTVIMLVGNKSDLRHLRAVQTEEAMAFAEKHNLAFLETSALDATGVDTAFQRILTEIYNLMSRKTMQAQGTGATAALPTGNKIEITADNTAAAAKAKKKSTCC 219
BLAST of EWM29062.1 vs. NCBI_GenBank
Match: gi|375332073|gb|AFA52576.1| (Rab11 family GTPase [Vaucheria litorea]) HSP 1 Score: 320.087 bits (819), Expect = 4.434e-106 Identity = 160/216 (74.07%), Postives = 181/216 (83.80%), Query Frame = 0
Query: 3 GGKDETYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSIKAADGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKRVTFDNVERWLKELREHADQSIVVMLVGNKSDLRHLRTVPTEDAMRFAEENRLAFIETSALDASGVDTAFHRILTEIHSLLSKKSMAGNDGGFGQAIGVGQKIALSSNPPANKATASFQQC 218
G KDE YDYLFKVVLIGDSGVGKSNLLSRFTRNEFN+ESKSTIGVEFATKSI+ + K+IKAQIWDTAGQERYRAITSAYYRGAVGALLVYDI+K TF+N ERWLKELR+HA+ +IVVMLVGNK DLRHLRTV E+A FAE+N LAFIETSALD+SGVDTAF +ILTEI+ L++KK M+GN G IG G++IAL N +KA+ C
Sbjct: 56 GAKDEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNMESKSTIGVEFATKSIQT-ENKIIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKHSTFENAERWLKELRDHAESNIVVMLVGNKCDLRHLRTVSVEEAKEFAEKNSLAFIETSALDSSGVDTAFQQILTEIYKLMNKKQMSGN-GNNSLNIGQGERIAL--NSGGDKASGDGSAC 267
BLAST of EWM29062.1 vs. NCBI_GenBank
Match: gi|857971181|emb|CEP02471.1| (hypothetical protein PBRA_009055 [Plasmodiophora brassicae]) HSP 1 Score: 317.775 bits (813), Expect = 7.246e-106 Identity = 159/220 (72.27%), Postives = 178/220 (80.91%), Query Frame = 0
Query: 6 DETYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSIKAADGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKRVTFDNVERWLKELREHADQSIVVMLVGNKSDLRHLRTVPTEDAMRFAEENRLAFIETSALDASGVDTAFHRILTEIHSLLSKKSMAGNDGGFGQAIGVGQKIALSSNPPANKATASF----QQCCKG 221
DE YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFAT+SIK D KVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKRVT+DNV RWLKELR+HAD++IV+MLVGNK DLRH+R VPTE+A F E N L FIETSALDAS VD AF RILTEI+ ++SKK++ + G + G GQ I ++ A +S +CCKG
Sbjct: 13 DEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIKT-DDKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKRVTYDNVARWLKELRDHADENIVIMLVGNKRDLRHMRMVPTEEAKEFCEANNLFFIETSALDASNVDLAFQRILTEIYQIISKKNVHADASGAHKFTGAGQAIVITDENAAQGGASSASNGGSRCCKG 231
BLAST of EWM29062.1 vs. NCBI_GenBank
Match: gi|325190342|emb|CCA24816.1| (Rab11 family GTPase putative [Albugo laibachii Nc14]) HSP 1 Score: 317.39 bits (812), Expect = 7.279e-106 Identity = 156/219 (71.23%), Postives = 179/219 (81.74%), Query Frame = 0
Query: 1 MAGGKDETYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSIKAADGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKRVTFDNVERWLKELREHADQSIVVMLVGNKSDLRHLRTVPTEDAMRFAEENRLAFIETSALDASGVDTAFHRILTEIHSLLSKKSMAGNDGGFGQAIGVGQKIALSSNPPANKATASFQQCC 219
MA K++ YDYLFK+VLIGDSGVGKSNLLSRFTRNEF+LESKSTIGVEFATKSI A+GK IKAQIWDTAGQERYRAITSAYYRGAVGALLVYDI+K V+F+NVERWLKELREHAD + V+MLVGNKSDLRHLR VPTE+AM FAE+N LAFIETSAL+A GVD+AF RILTEI+ L+S+K+M + +I G I ++S+ CC
Sbjct: 1 MASPKEDDYDYLFKIVLIGDSGVGKSNLLSRFTRNEFHLESKSTIGVEFATKSI-VAEGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKHVSFENVERWLKELREHADANTVIMLVGNKSDLRHLRAVPTEEAMAFAEKNNLAFIETSALEAIGVDSAFQRILTEIYKLMSRKTMQAEENQI--SIPSGDNIVITSDKTEEGVKKKKSSCC 216
BLAST of EWM29062.1 vs. NCBI_GenBank
Match: gi|1072223785|gb|OEU08538.1| (hypothetical protein FRACYDRAFT_174052, partial [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 316.62 bits (810), Expect = 1.376e-105 Identity = 157/209 (75.12%), Postives = 184/209 (88.04%), Query Frame = 0
Query: 1 MAGGKDETYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSIKAADGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKRVTFDNVERWLKELREHADQSIVVMLVGNKSDLRHLRTVPTEDAMRFAEENRLAFIETSALDASGVDTAFHRILTEIHSLLSKKSMA--GNDGGFGQ--AIGVGQKIALSSN 205
MA DE YDYLFK+VLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSI+A +GK IKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISK TF+NVERWLKELR+HA+ +IVVMLVGNKSDLRHLR+V T++AM F+E++ LAFIETSALD+SGVDTAF RILTEI+ L+S++++A G++ G G ++ G I+L++N
Sbjct: 1 MAARVDEEYDYLFKIVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSIQA-EGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKHGTFENVERWLKELRDHAEANIVVMLVGNKSDLRHLRSVETDEAMSFSEQHNLAFIETSALDSSGVDTAFQRILTEIYRLMSRRNVAAEGDNSGSGNNPSLSAGTSISLNNN 208 The following BLAST results are available for this feature:
BLAST of EWM29062.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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