EWM29062.1, cds1573 (CDS) Nannochloropsis gaditana

Overview
NameEWM29062.1
Unique Namecds1573
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:975395..975437 -
Alignment locationCM002457.1:975080..975252 -
Alignment locationCM002457.1:974510..974952 -
Alignment locationCM002457.1:974127..974448 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM29062.1
Productrab11 family gtpase
Orig transcript idgnl|cribi|Naga_100024g60.4320.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:975395..975437 -
CM002457.1supercontigCM002457.1:975080..975252 -
CM002457.1supercontigCM002457.1:974510..974952 -
CM002457.1supercontigCM002457.1:974127..974448 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0000166nucleotide binding
GO:0003924GTPase activity
GO:0005525GTP binding
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
GO:0015031protein transport
GO:0006913nucleocytoplasmic transport
GO:0006886intracellular protein transport
GO:0007165signal transduction
GO:0007264small GTPase mediated signal transduction
Vocabulary: Cellular Component
TermDefinition
GO:0005739mitochondrion
GO:0005768endosome
GO:0016020membrane
GO:0005622intracellular
Vocabulary: INTERPRO
TermDefinition
IPR005225Small_GTP-bd_dom
IPR027417P-loop_NTPase
IPR003579Small_GTPase_Rab_type
IPR002041Ran_GTPase
IPR020849Small_GTPase_Ras
IPR003578Small_GTPase_Rho
IPR001806Small_GTPase
Homology
BLAST of EWM29062.1 vs. NCBI_GenBank
Match: gi|585111581|gb|EWM29062.1| (rab11 family gtpase [Nannochloropsis gaditana])

HSP 1 Score: 676.781 bits (1745), Expect = 0.000e+0
Identity = 326/326 (100.00%), Postives = 326/326 (100.00%), Query Frame = 0
Query:    1 MAGGKDETYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSIKAADGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKRVTFDNVERWLKELREHADQSIVVMLVGNKSDLRHLRTVPTEDAMRFAEENRLAFIETSALDASGVDTAFHRILTEIHSLLSKKSMAGNDGGFGQAIGVGQKIALSSNPPANKATASFQQCCKGKGTEKLSLKISSRTCQHFTRGSREAEHRDMHSGFLRRHGEVNARLSGFRLHFSSRIVGELVCFAPPQPFLVPASIPSCKMRCLKAARYGWKKCKRKKGKQGAISC 326
            MAGGKDETYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSIKAADGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKRVTFDNVERWLKELREHADQSIVVMLVGNKSDLRHLRTVPTEDAMRFAEENRLAFIETSALDASGVDTAFHRILTEIHSLLSKKSMAGNDGGFGQAIGVGQKIALSSNPPANKATASFQQCCKGKGTEKLSLKISSRTCQHFTRGSREAEHRDMHSGFLRRHGEVNARLSGFRLHFSSRIVGELVCFAPPQPFLVPASIPSCKMRCLKAARYGWKKCKRKKGKQGAISC
Sbjct:    1 MAGGKDETYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSIKAADGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKRVTFDNVERWLKELREHADQSIVVMLVGNKSDLRHLRTVPTEDAMRFAEENRLAFIETSALDASGVDTAFHRILTEIHSLLSKKSMAGNDGGFGQAIGVGQKIALSSNPPANKATASFQQCCKGKGTEKLSLKISSRTCQHFTRGSREAEHRDMHSGFLRRHGEVNARLSGFRLHFSSRIVGELVCFAPPQPFLVPASIPSCKMRCLKAARYGWKKCKRKKGKQGAISC 326          
BLAST of EWM29062.1 vs. NCBI_GenBank
Match: gi|397569796|gb|EJK46971.1| (hypothetical protein THAOC_34340 [Thalassiosira oceanica])

HSP 1 Score: 323.168 bits (827), Expect = 3.210e-108
Identity = 161/222 (72.52%), Postives = 185/222 (83.33%), Query Frame = 0
Query:    1 MAGGKDETYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSIKAADGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKRVTFDNVERWLKELREHADQSIVVMLVGNKSDLRHLRTVPTEDAMRFAEENRLAFIETSALDASGVDTAFHRILTEIHSLLSKKSMAGNDGGFGQAIGVGQKIALSS-NPPANKATASFQQCCKG 221
            M    DE YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSI+  +GK IKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISK  TF+NVERWLKELR+HA+ +IVVMLVGNKSDLRHLR V T++AM F+E++ LAFIETSALDASGVDT+F RILTEI+ L+S+++MA  +GG    +  GQ I+L++ N P        + CC+G
Sbjct:    1 MGSRADEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSIQT-EGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKHSTFENVERWLKELRDHAEANIVVMLVGNKSDLRHLRAVETDEAMAFSEQHNLAFIETSALDASGVDTSFQRILTEIYRLMSRRNMAAEEGGNQPQLSTGQTISLNNDNKPR-------RNCCQG 214          
BLAST of EWM29062.1 vs. NCBI_GenBank
Match: gi|224005202|ref|XP_002296252.1| (rab-type small GTPase [Thalassiosira pseudonana CCMP1335] >gi|209586284|gb|ACI64969.1| rab-type small GTPase [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 322.783 bits (826), Expect = 4.980e-108
Identity = 162/222 (72.97%), Postives = 183/222 (82.43%), Query Frame = 0
Query:    1 MAGGKDETYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSIKAADGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKRVTFDNVERWLKELREHADQSIVVMLVGNKSDLRHLRTVPTEDAMRFAEENRLAFIETSALDASGVDTAFHRILTEIHSLLSKKSMAGNDGGFGQAIGVGQKIALSS-NPPANKATASFQQCCKG 221
            MA   DE YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSI+  +GK IKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISK  TF+NVERWLKELR+HA+ +IVVMLVGNKSDLRHLR V T++AM F+E++ LAFIETSALDASGVDTAF RILTEI+ L+S+++MA  DG     +  GQ I+L++ N P        + CC  
Sbjct:    1 MATRADEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSIQT-EGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKHGTFENVERWLKELRDHAEANIVVMLVGNKSDLRHLRAVETDEAMAFSEQHNLAFIETSALDASGVDTAFQRILTEIYRLMSRRNMAAEDGANAPQLSSGQTISLNAENKPR-------RNCCNN 214          
BLAST of EWM29062.1 vs. NCBI_GenBank
Match: gi|299473109|emb|CBN78685.1| (Rab11A, RAB family GTPase [Ectocarpus siliculosus])

HSP 1 Score: 321.627 bits (823), Expect = 1.599e-107
Identity = 164/222 (73.87%), Postives = 190/222 (85.59%), Query Frame = 0
Query:    1 MAGGKDETYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSIKAADGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKRVTFDNVERWLKELREHADQSIVVMLVGNKSDLRHLRTVPTEDAMRFAEENRLAFIETSALDASGVDTAFHRILTEIHSLLSKKSMAGNDGGFGQAIGVGQKIALSS--NPPANKATASFQQCCK 220
            MAG +DE YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSI+  +GK IKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISK VTF+NVERWLKELR+HA+ +IVVML+GNKSDLRHLRTV  E+AM FA+++ LAF+ETSALDASGVD+AF RILTEI+ L+S+K++A N    G  +  G+ IALSS  +  +N++ +S    CK
Sbjct:    1 MAGKEDE-YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSIQT-EGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKHVTFENVERWLKELRDHAEANIVVMLIGNKSDLRHLRTVTHEEAMEFAKKHNLAFLETSALDASGVDSAFQRILTEIYRLMSRKTIAANTAT-GPDLSRGETIALSSARDDASNRSKSSCAGSCK 219          
BLAST of EWM29062.1 vs. NCBI_GenBank
Match: gi|1210511857|dbj|GAX29097.1| (Ras-related protein Rab-11A [Fistulifera solaris] >gi|1210524678|dbj|GAX16578.1| Ras-related protein Rab-11A [Fistulifera solaris])

HSP 1 Score: 320.472 bits (820), Expect = 3.144e-107
Identity = 158/214 (73.83%), Postives = 179/214 (83.64%), Query Frame = 0
Query:    6 DETYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSIKAADGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKRVTFDNVERWLKELREHADQSIVVMLVGNKSDLRHLRTVPTEDAMRFAEENRLAFIETSALDASGVDTAFHRILTEIHSLLSKKSMAGNDGGFGQAIGVGQKIALSSNPPANKATASFQQCC 219
            DE YDYLFK+VLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSI+A +GK IKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISK  TF+NVERWLKELR+HA+ +IVVMLVGNKSDLRHLR V T++AM F+E++ LAFIETSALDASGVDTAF RILTEI+ L+S+++M   +   G ++  GQ I+LS      K       CC
Sbjct:    6 DEEYDYLFKIVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSIQA-EGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKHPTFENVERWLKELRDHAEANIVVMLVGNKSDLRHLRAVETDEAMAFSEQHNLAFIETSALDASGVDTAFQRILTEIYRLMSRRNMQAEEAAAGSSLSAGQTISLSDGGKKKKG------CC 212          
BLAST of EWM29062.1 vs. NCBI_GenBank
Match: gi|1173942392|gb|OQR91404.1| (Rab11 family GTPase [Thraustotheca clavata])

HSP 1 Score: 319.701 bits (818), Expect = 1.013e-106
Identity = 159/220 (72.27%), Postives = 181/220 (82.27%), Query Frame = 0
Query:    1 MAGGKDETYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSIKAADGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKRVTFDNVERWLKELREHADQSIVVMLVGNKSDLRHLRTVPTEDAMRFAEENRLAFIETSALDASGVDTAFHRILTEIHSLLSKKSMAGNDGGFGQAIGVGQKIALSS-NPPANKATASFQQCC 219
            M   KD+ YDYLFKVVLIGDSGVGKSNLLSRFTRNEF+LESKSTIGVEFATKSI+A +GK IKAQIWDTAGQERYRAITSAYYRGAVGALLVYDI+K  TFDNVERWLKELR+HAD + V+MLVGNKSDLRHLR V TE+AM FAE++ LAF+ETSALDA+GVDTAF RILTEI++L+S+K+M     G   A+  G KI +++ N  A         CC
Sbjct:    1 MGSTKDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATKSIQA-EGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKHPTFDNVERWLKELRDHADANTVIMLVGNKSDLRHLRAVQTEEAMAFAEKHNLAFLETSALDATGVDTAFQRILTEIYNLMSRKTMQAQGTGATAALPTGNKIEITADNTAAAAKAKKKSTCC 219          
BLAST of EWM29062.1 vs. NCBI_GenBank
Match: gi|375332073|gb|AFA52576.1| (Rab11 family GTPase [Vaucheria litorea])

HSP 1 Score: 320.087 bits (819), Expect = 4.434e-106
Identity = 160/216 (74.07%), Postives = 181/216 (83.80%), Query Frame = 0
Query:    3 GGKDETYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSIKAADGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKRVTFDNVERWLKELREHADQSIVVMLVGNKSDLRHLRTVPTEDAMRFAEENRLAFIETSALDASGVDTAFHRILTEIHSLLSKKSMAGNDGGFGQAIGVGQKIALSSNPPANKATASFQQC 218
            G KDE YDYLFKVVLIGDSGVGKSNLLSRFTRNEFN+ESKSTIGVEFATKSI+  + K+IKAQIWDTAGQERYRAITSAYYRGAVGALLVYDI+K  TF+N ERWLKELR+HA+ +IVVMLVGNK DLRHLRTV  E+A  FAE+N LAFIETSALD+SGVDTAF +ILTEI+ L++KK M+GN G     IG G++IAL  N   +KA+     C
Sbjct:   56 GAKDEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNMESKSTIGVEFATKSIQT-ENKIIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKHSTFENAERWLKELRDHAESNIVVMLVGNKCDLRHLRTVSVEEAKEFAEKNSLAFIETSALDSSGVDTAFQQILTEIYKLMNKKQMSGN-GNNSLNIGQGERIAL--NSGGDKASGDGSAC 267          
BLAST of EWM29062.1 vs. NCBI_GenBank
Match: gi|857971181|emb|CEP02471.1| (hypothetical protein PBRA_009055 [Plasmodiophora brassicae])

HSP 1 Score: 317.775 bits (813), Expect = 7.246e-106
Identity = 159/220 (72.27%), Postives = 178/220 (80.91%), Query Frame = 0
Query:    6 DETYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSIKAADGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKRVTFDNVERWLKELREHADQSIVVMLVGNKSDLRHLRTVPTEDAMRFAEENRLAFIETSALDASGVDTAFHRILTEIHSLLSKKSMAGNDGGFGQAIGVGQKIALSSNPPANKATASF----QQCCKG 221
            DE YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFAT+SIK  D KVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKRVT+DNV RWLKELR+HAD++IV+MLVGNK DLRH+R VPTE+A  F E N L FIETSALDAS VD AF RILTEI+ ++SKK++  +  G  +  G GQ I ++    A    +S      +CCKG
Sbjct:   13 DEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIKT-DDKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKRVTYDNVARWLKELRDHADENIVIMLVGNKRDLRHMRMVPTEEAKEFCEANNLFFIETSALDASNVDLAFQRILTEIYQIISKKNVHADASGAHKFTGAGQAIVITDENAAQGGASSASNGGSRCCKG 231          
BLAST of EWM29062.1 vs. NCBI_GenBank
Match: gi|325190342|emb|CCA24816.1| (Rab11 family GTPase putative [Albugo laibachii Nc14])

HSP 1 Score: 317.39 bits (812), Expect = 7.279e-106
Identity = 156/219 (71.23%), Postives = 179/219 (81.74%), Query Frame = 0
Query:    1 MAGGKDETYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSIKAADGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKRVTFDNVERWLKELREHADQSIVVMLVGNKSDLRHLRTVPTEDAMRFAEENRLAFIETSALDASGVDTAFHRILTEIHSLLSKKSMAGNDGGFGQAIGVGQKIALSSNPPANKATASFQQCC 219
            MA  K++ YDYLFK+VLIGDSGVGKSNLLSRFTRNEF+LESKSTIGVEFATKSI  A+GK IKAQIWDTAGQERYRAITSAYYRGAVGALLVYDI+K V+F+NVERWLKELREHAD + V+MLVGNKSDLRHLR VPTE+AM FAE+N LAFIETSAL+A GVD+AF RILTEI+ L+S+K+M   +     +I  G  I ++S+            CC
Sbjct:    1 MASPKEDDYDYLFKIVLIGDSGVGKSNLLSRFTRNEFHLESKSTIGVEFATKSI-VAEGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKHVSFENVERWLKELREHADANTVIMLVGNKSDLRHLRAVPTEEAMAFAEKNNLAFIETSALEAIGVDSAFQRILTEIYKLMSRKTMQAEENQI--SIPSGDNIVITSDKTEEGVKKKKSSCC 216          
BLAST of EWM29062.1 vs. NCBI_GenBank
Match: gi|1072223785|gb|OEU08538.1| (hypothetical protein FRACYDRAFT_174052, partial [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 316.62 bits (810), Expect = 1.376e-105
Identity = 157/209 (75.12%), Postives = 184/209 (88.04%), Query Frame = 0
Query:    1 MAGGKDETYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSIKAADGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKRVTFDNVERWLKELREHADQSIVVMLVGNKSDLRHLRTVPTEDAMRFAEENRLAFIETSALDASGVDTAFHRILTEIHSLLSKKSMA--GNDGGFGQ--AIGVGQKIALSSN 205
            MA   DE YDYLFK+VLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSI+A +GK IKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISK  TF+NVERWLKELR+HA+ +IVVMLVGNKSDLRHLR+V T++AM F+E++ LAFIETSALD+SGVDTAF RILTEI+ L+S++++A  G++ G G   ++  G  I+L++N
Sbjct:    1 MAARVDEEYDYLFKIVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSIQA-EGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKHGTFENVERWLKELRDHAEANIVVMLVGNKSDLRHLRSVETDEAMSFSEQHNLAFIETSALDSSGVDTAFQRILTEIYRLMSRRNVAAEGDNSGSGNNPSLSAGTSISLNNN 208          
The following BLAST results are available for this feature:
BLAST of EWM29062.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111581|gb|EWM29062.1|0.000e+0100.00rab11 family gtpase [Nannochloropsis gaditana][more]
gi|397569796|gb|EJK46971.1|3.210e-10872.52hypothetical protein THAOC_34340 [Thalassiosira oc... [more]
gi|224005202|ref|XP_002296252.1|4.980e-10872.97rab-type small GTPase [Thalassiosira pseudonana CC... [more]
gi|299473109|emb|CBN78685.1|1.599e-10773.87Rab11A, RAB family GTPase [Ectocarpus siliculosus][more]
gi|1210511857|dbj|GAX29097.1|3.144e-10773.83Ras-related protein Rab-11A [Fistulifera solaris] ... [more]
gi|1173942392|gb|OQR91404.1|1.013e-10672.27Rab11 family GTPase [Thraustotheca clavata][more]
gi|375332073|gb|AFA52576.1|4.434e-10674.07Rab11 family GTPase [Vaucheria litorea][more]
gi|857971181|emb|CEP02471.1|7.246e-10672.27hypothetical protein PBRA_009055 [Plasmodiophora b... [more]
gi|325190342|emb|CCA24816.1|7.279e-10671.23Rab11 family GTPase putative [Albugo laibachii Nc1... [more]
gi|1072223785|gb|OEU08538.1|1.376e-10575.12hypothetical protein FRACYDRAFT_174052, partial [F... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1577rna1577Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications