rna1575, rna1575 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1575
Unique Name	rna1575
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	878
Alignment location	CM002457.1:966981..969392 +

Link to JBrowse

Properties


Property Name	Value
Product	lysyl-trna synthetase
Orig transcript id	gnl\|cribi\|Naga_100024g62.4362.mrna
Orig protein id	gnl\|cribi\|Naga_100024g62.4362
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002457.1	supercontig	CM002457.1:966981..969392 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100024g62	gene1514	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1575	rna1575-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29104.1	cds1571	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002457.1:966981..969392+
coding sequence from alignment at CM002457.1:966981..969392+

mRNA sequence

>rna1575 ID=rna1575|Name=rna1575|organism=Nannochloropsis gaditana|type=mRNA|length=878bp
ACGAACAGATAAACCACTGCGTATTAAATCAGACCTGTGCCAATTACAGA
GGTTGAAACGTGGCAGCAAGCTTCCAAATGAGGGCACTACGTAGCATCTG
TGTCTCCCTCATCCTCCACTTGCACCTTGCGAAGGTCGGGAGGGGCTTCA
TGATGGCATTATGGGACACGTCCACCCCTAAAATAGATCCAAATTACCAT
TCACGCTCATTGCGTGCAATGACAATGAGCTCGACCGACCGAAGCGTCCG
TCAGCCCAAGAAAACGATAGCTTACGAGGCGGCTTTAAAAGACAGAGGAG
CCCCCGCGGTCATTCTCGTCCGGCCCTACCTCGACGAGAATGTAGGTTCG
TGCGCGCGGGCCATGCTGAACTTTGGGTTGACAGACCTACGAATTATTGA
CCCTTTTTGCGATCATCTCACCCCGATGGCTCGTGCTCGTGCCTCGGGAG
CCGACAACGTCTTGGAGGGGGCCCGGGTATTCCGAGGCCTGGACGAGGCG
GTGGCGGACTTGAGCGAGGTCATTGGTACCAGCGCCCGTCAGCGCGACAT
GACCATTACAATTGTCTCTCCTGAAGAGGCTGCACGCTTGGCAGTGGGCA
CGCTTGCCAATTTCGCGCGAGGGGGCGCACGTGCCGGATATATGTTTGGG
AGCGAGCGAAACGGTCTCACGAATGAGGACTTGGTCTACGCGGATCGAAT
CCTGCAGATTCCCACGAACCCTGCATTTAGCAGTTTAAACTTAGGGCAAG
CCGTTCAAATTTGCGGGTAAGCGTGTAGGACAGGCTCCAAGAGTGAGGAA
AGGTAGCCGGGATAAGACGAACAGGGGGCGCTGTTTCCTTGCCAAGGAGC
CTGACGCCCTTATATCCTTTCCTCCCCC

protein sequence of rna1575

>rna1575-protein ID=rna1575-protein|Name=rna1575|organism=Nannochloropsis gaditana|type=polypeptide|length=623bp
MGVYGIGSSTSTEKPKRLRRRGQPALKPSSAVLVLAVLVASATVRAFVPT
RAPFKMLPIRSILRTVAVAVRPGIFPSRGLVVRMLSDGADVGPATAGSKK
QKQKGTKKQTQVDEEPLTGAALTAKENELKVDRWNKARAMEAEGRPAFAA
TYPVTASVAHINKKWAALEAGAEDESADVAVAGRIMARRVFGKLAFFTLQ
DDSGVIQLYLDKGRLGEEFTKLKAYTDSGDIVGVRGSVKRTEKGEISVYV
REWSMLTKALLPLPDKWHGLTDVNKRYRQREVDLIVNPQVKETFRLRAKM
FSGLRRMLDERGFLEIETPILQVHPGGADARPFKTFHNSLDMDLTMRIAT
ELHLKRLVVGGFERVYEVGRIFRNEGISTRHNPEFTSVELYQAYADYYDM
MDLTEELIHGLAKSLLNTEDLVYQNQTIHLQRPWRRTTMHELVAEKLPGQ
FDLSTLADNSVESLEKAKEVARAAGVPDVGTCQSVGHVVQACFEELCEAD
LIQPTFVTDHPVEVSPLAKPHRSKPGLTERFELFVYGRELANAFSELTDP
VDQRKRFEAQVERKAALNLEEAATVDEEFLAALERGMPPTGGLGIGLDRL
VMLFSDAPSIKDVIAFPLLKKED

mRNA from alignment at CM002457.1:966981..969392+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1575 ID=rna1575|Name=rna1575|organism=Nannochloropsis gaditana|type=mRNA|length=2412bp|location=Sequence derived from alignment at CM002457.1:966981..969392+ (Nannochloropsis gaditana)
CAGGAATGATATCATCGAGCGGTCGAGGCTGCTGttgcctttttcctttc
tttaaTCCGCATGCGACGTATTTCACTTGTTACCTAGACATGCGTTCTTT
TTCACGTACTTGCAGGCATTTCCTCCCAATGGTTCACGCTCAGTGCTTGA
CTTCTACCAAAGCCATGGCTCCCCCGCTAAAGTAGCCTCTCCCCCGTATG
CTTCCTTCGTACATGTTTTCACCCTCACACCCGCCTTTGTTAATTATCAT
CGTTGAAAGGCCTTCAGGCTATACACGACAGAGAGCGAAAAGCTTAAGGA
ATGGGCGTGTATGGCATAGGAAGCAGTACAAGCACCGAAAAGCCTAAACG
ACTAAGAAGACGAGGCCAGCCTGCgctcaagccctcctccgccgtgctTG
TGCTGGCAGTCCTTGTGGCCTCTGCCACCGTGCGCGCTTTCGTACCTACC
CGTGCACCTTTCAAGATGCTACCCATCCGGTCAATACTGCGCACAGTGGC
GGTGGCAGTGCGCCCTGGTATTTTTCCCTCGCGCGGGCTGGTGGTCCGCA
TGCTGAGTGACGGTGCTGACGTGGGGCCCGCTACAGCTGGCTCCAAGAAA
CAAAAACAGAAAGGAACCAAGAAACAAACTCAGGTGGACGAAGAGCCTTT
GACAGGTGCTGCATTGACTGCGAAGGAGAACGAGCTCAAGGTGGACCGAT
GGAACAAGGCGCGGGCCATGGAGGCAGAGGGCCGCCCGGCTTTCGCGGCC
ACCTACCCCGTAACCGCCTCCGTGGCGCACATCAATAAAAAATGGGCCGC
tttggaggcaggggcagagGATGAATCCGCCGACGTGGCTGTGGCAGGTC
GTATCATGGCACGGCGGGTGTTTGGGAAGTTGGCCTTCTTCACGTTGCAG
GACGACTCGGGAGTCATCCAACTCTACCTGGACAAAGGGCGCCTGGGCGA
AGAGTTCACGAAGCTCAAGGCCTATACTGACAGCGGGGACATTGTTGGCG
TGCGGGGATCGGTGAAGCGGACCGAAAAGGGTGAGATCTCGGTGTACGTG
AGGGAGTGGAGCATGCTGAccaaggccctcctccctttgccgGACAAGTG
GCACGGTCTGACGGACGTGAACAAGCGCTACCGACAGCGGGAGGTAGACC
TGATTGTGAACCCGCAGGTGAAAGAGACTTTTCGACTGCGCGCGAAGATG
TTCTCGGGTCTTCGGCGCATGCTGGACGAGAGAGGCTTCCTGGAGATTGA
GACGCCCATCCTCCAGGTGCACCCCGGAGGTGCCGACGCCCGCCCCTTCA
AGACCTTCCACAACAGCCTCGACATGGACTTAACCATGCGGATTGCCACG
GAACTGCATTTGAAGCggctggtggtgggaggCTTCGAACGCGTGTACGA
AGTGGGCAGGATCTTTCGAAACGAGGGCATCTCCACCCGGCACAACCCCG
AGTTCACCTCCGTCGAGCTCTATCAAGCCTACGCGGACTACTACGACATG
ATGGATCTGACCGAAGAATTGATCCACGGGCTGGCTAAATCCCTATTGAA
CACGGAGGACCTCGTTTACCAAAACCAGACCATCCATCTCCAGCGGCCCT
GGCGACGGACGACGATGCACGAGTTGGTCGCGGAAAAGCTACCCGGTCAG
TTCGATCTGTCCACTTTGGCCGATAACAGCGTCGAATCCCTGGAGAAAGC
CAAGGAAGTGGCGCGTGCAGCCGGGGTGCCCGATGTTGGCACCTGCCAGA
GCGTCGGCCATGTCGTGCAAGCCTGTTTTGAGGAACTCTGCGAGGCTGAC
CTGATCCAGCCAACGTTTGTGACCGACCATCCCGTGGAGGTGTCCCCCTT
GGCCAAGCCTCATCGGAGCAAGCCGGGCCTGACGGAGCGTTTCGAGTTGT
TTGTGTACGGGCGGGAGCTCGCGAATGCCTTCTCTGAATTGACCGATCCG
GTGGACCAGCGGAAAAGGTTTGAGGCGCAGgtagagaggaaagcggccCT
TAATTtagaggaggcggccacggtCGACGAGGAATTTTTGGCGGCCCTGG
AGCGCGGCATGCCTCCGACGGGGGGGTTGGGCATCGGATTGGACCGTCTG
GTTATGCTCTTCAGCGACGCGCCCTCCATCAAGGACGTGATCGCGTTCCC
GCTACTCAAGAAAGAAGATTAGAGGGGCCAGGCCAGTGAGCGTGTGGAAG
TAAAAGTGATGTATTCCACgtcggggaaggaaggcataAAAAAAGCATTC
ATAACATATTCGTGACAAGGAAGTGAGATGCACTCGAAGAGACACTTTCC
GTGCCCATGATACTTTTGGTTAGCGTCACCTTGAAATGCATCTAGCGACT
ATCTACCCCCGAGTCTTGACCTGCAAGAGTCAATGGGCATAGCAAGAGAT
AAAGCACAAACC

Coding sequence (CDS) from alignment at CM002457.1:966981..969392+

>rna1575 ID=rna1575|Name=rna1575|organism=Nannochloropsis gaditana|type=CDS|length=1872bp|location=Sequence derived from alignment at CM002457.1:966981..969392+ (Nannochloropsis gaditana)
ATGGGCGTGTATGGCATAGGAAGCAGTACAAGCACCGAAAAGCCTAAACG
ACTAAGAAGACGAGGCCAGCCTGCgctcaagccctcctccgccgtgctTG
TGCTGGCAGTCCTTGTGGCCTCTGCCACCGTGCGCGCTTTCGTACCTACC
CGTGCACCTTTCAAGATGCTACCCATCCGGTCAATACTGCGCACAGTGGC
GGTGGCAGTGCGCCCTGGTATTTTTCCCTCGCGCGGGCTGGTGGTCCGCA
TGCTGAGTGACGGTGCTGACGTGGGGCCCGCTACAGCTGGCTCCAAGAAA
CAAAAACAGAAAGGAACCAAGAAACAAACTCAGGTGGACGAAGAGCCTTT
GACAGGTGCTGCATTGACTGCGAAGGAGAACGAGCTCAAGGTGGACCGAT
GGAACAAGGCGCGGGCCATGGAGGCAGAGGGCCGCCCGGCTTTCGCGGCC
ACCTACCCCGTAACCGCCTCCGTGGCGCACATCAATAAAAAATGGGCCGC
tttggaggcaggggcagagGATGAATCCGCCGACGTGGCTGTGGCAGGTC
GTATCATGGCACGGCGGGTGTTTGGGAAGTTGGCCTTCTTCACGTTGCAG
GACGACTCGGGAGTCATCCAACTCTACCTGGACAAAGGGCGCCTGGGCGA
AGAGTTCACGAAGCTCAAGGCCTATACTGACAGCGGGGACATTGTTGGCG
TGCGGGGATCGGTGAAGCGGACCGAAAAGGGTGAGATCTCGGTGTACGTG
AGGGAGTGGAGCATGCTGAccaaggccctcctccctttgccgGACAAGTG
GCACGGTCTGACGGACGTGAACAAGCGCTACCGACAGCGGGAGGTAGACC
TGATTGTGAACCCGCAGGTGAAAGAGACTTTTCGACTGCGCGCGAAGATG
TTCTCGGGTCTTCGGCGCATGCTGGACGAGAGAGGCTTCCTGGAGATTGA
GACGCCCATCCTCCAGGTGCACCCCGGAGGTGCCGACGCCCGCCCCTTCA
AGACCTTCCACAACAGCCTCGACATGGACTTAACCATGCGGATTGCCACG
GAACTGCATTTGAAGCggctggtggtgggaggCTTCGAACGCGTGTACGA
AGTGGGCAGGATCTTTCGAAACGAGGGCATCTCCACCCGGCACAACCCCG
AGTTCACCTCCGTCGAGCTCTATCAAGCCTACGCGGACTACTACGACATG
ATGGATCTGACCGAAGAATTGATCCACGGGCTGGCTAAATCCCTATTGAA
CACGGAGGACCTCGTTTACCAAAACCAGACCATCCATCTCCAGCGGCCCT
GGCGACGGACGACGATGCACGAGTTGGTCGCGGAAAAGCTACCCGGTCAG
TTCGATCTGTCCACTTTGGCCGATAACAGCGTCGAATCCCTGGAGAAAGC
CAAGGAAGTGGCGCGTGCAGCCGGGGTGCCCGATGTTGGCACCTGCCAGA
GCGTCGGCCATGTCGTGCAAGCCTGTTTTGAGGAACTCTGCGAGGCTGAC
CTGATCCAGCCAACGTTTGTGACCGACCATCCCGTGGAGGTGTCCCCCTT
GGCCAAGCCTCATCGGAGCAAGCCGGGCCTGACGGAGCGTTTCGAGTTGT
TTGTGTACGGGCGGGAGCTCGCGAATGCCTTCTCTGAATTGACCGATCCG
GTGGACCAGCGGAAAAGGTTTGAGGCGCAGgtagagaggaaagcggccCT
TAATTtagaggaggcggccacggtCGACGAGGAATTTTTGGCGGCCCTGG
AGCGCGGCATGCCTCCGACGGGGGGGTTGGGCATCGGATTGGACCGTCTG
GTTATGCTCTTCAGCGACGCGCCCTCCATCAAGGACGTGATCGCGTTCCC
GCTACTCAAGAAAGAAGATTAG

Synonyms

Publications