rna1574, rna1574 (mRNA) Nannochloropsis gaditana

Overview
Namerna1574
Unique Namerna1574
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length953
Alignment locationCM002457.1:966027..966904 -

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Properties
Property NameValue
Producttrna rrna methyltransferase
Orig transcript idgnl|cribi|Naga_100024g63.4345.mrna
Orig protein idgnl|cribi|Naga_100024g63.4345
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:966027..966904 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100024g63gene1513Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29087.1cds1570Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1574rna1574-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1574 ID=rna1574|Name=rna1574|organism=Nannochloropsis gaditana|type=mRNA|length=953bp
GGCGAAAGGGAGGCTTGAAAGTGTGCTTGTGGCGGGGAGGGAAAGATTAA
ATGCAGCGAGCACGGCTTGCAGTGCTCAAGGCACATCTACCATACCCCAT
TCTCAAAAGAGTACAGAAAGATCACGGTTCAGTGCGGTCGGGCGGGCGTG
TCGATTGAGAGAAGAGGAGACGAGTAAAACGCATGAGGGTTCGTCTCAGA
TATTTAACTTGCAAGCTACATCTACGGCCTCATCAGGAAGGTGCTCTCAA
AAAGAAAGTCACTGCGTTCGACATCCTGCGTGCCATCAAAGAATCAGTCC
AAAGCAATTTTGGGAATTTCGGGGCCGCTCCTCTCCTTCTCTCTATGCAA
GTTCGATACTACGATGAGGCCACCCAAATTTTTATCCTGAGGTGTCCCCG
AGACAGTTTCCGATCCGTGTGGGCGGCGATGACACTTGTCACAAGCTTAG
GAGGCAGCATTACCAGCGGCAATAGCGGTGGCAGAGATTCTAGTGCGATC
AAGGCAAACATCAGTGTCCTTCGTGTGTCAGGATCAGTGCGTACTTGTCG
GCTCGACGCAGTCTCCATCCTTGTGCGGGCAGCGAATGAGTTGGAGGGTA
ATAATCGGCGTCCAGACCAGGAAAGCTTGATGGCGGCATCGACAGCCTTC
TACCAGGCACAGATCAGCAGTGCCATTCAAGGCGTGTAGCAAGGGGACAG
GATAAGTCGTGAGATGAAGAAGAATTTGTAGGCCATCGCCGCTCTTCTTC
ACCCTTCACAAAATTTATTGCGCGGACCGCCCTTCCAATGTACAAAGCAT
TCATTGTAAATATCAGGCTAGGGAATAAAAAGAACCAAAACTCGTTTTCC
CCGAATCCTTTCCTTTACATTTTTGCCATCGGGTACTGTTCCTTCAATAT
CACCAACCAGATCCCCGCTGTTTCGCCTGCTCCTCCTCCTGCCAGCCCTC
CCC
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protein sequence of rna1574

>rna1574-protein ID=rna1574-protein|Name=rna1574|organism=Nannochloropsis gaditana|type=polypeptide|length=230bp
MRALRSICVSLILHLHLAKVGRGFMMALWDTSTPKIDPNYHSRSLRAMTM
SSTDRSVRQPKKTIAYEAALKDRGAPAVILVRPYLDENVGSCARAMLNFG
LTDLRIIDPFCDHLTPMARARASGADNVLEGARVFRGLDEAVADLSEVIG
TSARQRDMTITIVSPEEAARLAVGTLANFARGGARAGYMFGSERNGLTNE
DLVYADRILQIPTNPAFSSLNLGQAVQICG
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mRNA from alignment at CM002457.1:966027..966904-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1574 ID=rna1574|Name=rna1574|organism=Nannochloropsis gaditana|type=mRNA|length=878bp|location=Sequence derived from alignment at CM002457.1:966027..966904- (Nannochloropsis gaditana)
ACGAACAGATAAACCACTGCGTATTAAATCAGACCTGTGCCAATTACAGA
GGTTGAAACGTGGCAGCAAGCTTCCAAATGAGGGCACTACGTAGCATCTG
TGTCTCCCTCATCCTCCACTTGCACCTTGCGAAGGTCGGGAGGGGCTTCA
TGATGGCATTATGGGACACGTCCACCCCTAAAATAGATCCAAATTACCAT
TCACGCTCATTGCGTGCAATGACAATGAGCTCGACCGACCGAAGCGTCCG
TCAGCCCAAGAAAACGATAGCTTACGAGGCGGCTTTAAAAGACAGAGGAG
CCCCCGCGGTCATTCTCGTCCGGCCCTACCTCGACGAGAATGTAGGTTCG
TGCGCGCGGGCCATGCTGAACTTTGGGTTGACAGACCTACGAATTATTGA
CCCTTTTTGCGATCATCTCACCCCGATGGCTCGTGCTCGTGCCTCGGGAG
CCGACAACGTCTTGGAGGGGGCCCGGGTATTCCGAGGCCTGGACGAGGCG
GTGGCGGACTTGAGCGAGGTCATTGGTACCAGCGCCCGTCAGCGCGACAT
GACCATTACAATTGTCTCTCCTGAAGAGGCTGCACGCTTGGCAGTGGGCA
CGCTTGCCAATTTCGCGCGAGGGGGCGCACGTGCCGGATATATGTTTGGG
AGCGAGCGAAACGGTCTCACGAATGAGGACTTGGTCTACGCGGATCGAAT
CCTGCAGATTCCCACGAACCCTGCATTTAGCAGTTTAAACTTAGGGCAAG
CCGTTCAAATTTGCGGGTAAGCGTGTAGGACAGGCTCCAAGAGTGAGGAA
AGGTAGCCGGGATAAGACGAACAGGGGGCGCTGTTTCCTTGCCAAGGAGC
CTGACGCCCTTATATCCTTTCCTCCCCC
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Coding sequence (CDS) from alignment at CM002457.1:966027..966904-

>rna1574 ID=rna1574|Name=rna1574|organism=Nannochloropsis gaditana|type=CDS|length=693bp|location=Sequence derived from alignment at CM002457.1:966027..966904- (Nannochloropsis gaditana)
ATGAGGGCACTACGTAGCATCTGTGTCTCCCTCATCCTCCACTTGCACCT
TGCGAAGGTCGGGAGGGGCTTCATGATGGCATTATGGGACACGTCCACCC
CTAAAATAGATCCAAATTACCATTCACGCTCATTGCGTGCAATGACAATG
AGCTCGACCGACCGAAGCGTCCGTCAGCCCAAGAAAACGATAGCTTACGA
GGCGGCTTTAAAAGACAGAGGAGCCCCCGCGGTCATTCTCGTCCGGCCCT
ACCTCGACGAGAATGTAGGTTCGTGCGCGCGGGCCATGCTGAACTTTGGG
TTGACAGACCTACGAATTATTGACCCTTTTTGCGATCATCTCACCCCGAT
GGCTCGTGCTCGTGCCTCGGGAGCCGACAACGTCTTGGAGGGGGCCCGGG
TATTCCGAGGCCTGGACGAGGCGGTGGCGGACTTGAGCGAGGTCATTGGT
ACCAGCGCCCGTCAGCGCGACATGACCATTACAATTGTCTCTCCTGAAGA
GGCTGCACGCTTGGCAGTGGGCACGCTTGCCAATTTCGCGCGAGGGGGCG
CACGTGCCGGATATATGTTTGGGAGCGAGCGAAACGGTCTCACGAATGAG
GACTTGGTCTACGCGGATCGAATCCTGCAGATTCCCACGAACCCTGCATT
TAGCAGTTTAAACTTAGGGCAAGCCGTTCAAATTTGCGGGTAA
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Synonyms
Publications