EWM29087.1, cds1570 (CDS) Nannochloropsis gaditana

Overview
NameEWM29087.1
Unique Namecds1570
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:966135..966827 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM29087.1
Producttrna rrna methyltransferase
Orig transcript idgnl|cribi|Naga_100024g63.4345.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:966135..966827 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0006396RNA processing
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
GO:0003723RNA binding
GO:0008173RNA methyltransferase activity
Vocabulary: INTERPRO
TermDefinition
IPR029028Alpha/beta_knot_MTases
IPR029026tRNA_m1G_MTases_N
IPR001537SpoU_MeTrfase
Homology
BLAST of EWM29087.1 vs. NCBI_GenBank
Match: gi|585111606|gb|EWM29087.1| (trna rrna methyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 471.855 bits (1213), Expect = 2.691e-168
Identity = 230/230 (100.00%), Postives = 230/230 (100.00%), Query Frame = 0
Query:    1 MRALRSICVSLILHLHLAKVGRGFMMALWDTSTPKIDPNYHSRSLRAMTMSSTDRSVRQPKKTIAYEAALKDRGAPAVILVRPYLDENVGSCARAMLNFGLTDLRIIDPFCDHLTPMARARASGADNVLEGARVFRGLDEAVADLSEVIGTSARQRDMTITIVSPEEAARLAVGTLANFARGGARAGYMFGSERNGLTNEDLVYADRILQIPTNPAFSSLNLGQAVQICG 230
            MRALRSICVSLILHLHLAKVGRGFMMALWDTSTPKIDPNYHSRSLRAMTMSSTDRSVRQPKKTIAYEAALKDRGAPAVILVRPYLDENVGSCARAMLNFGLTDLRIIDPFCDHLTPMARARASGADNVLEGARVFRGLDEAVADLSEVIGTSARQRDMTITIVSPEEAARLAVGTLANFARGGARAGYMFGSERNGLTNEDLVYADRILQIPTNPAFSSLNLGQAVQICG
Sbjct:    1 MRALRSICVSLILHLHLAKVGRGFMMALWDTSTPKIDPNYHSRSLRAMTMSSTDRSVRQPKKTIAYEAALKDRGAPAVILVRPYLDENVGSCARAMLNFGLTDLRIIDPFCDHLTPMARARASGADNVLEGARVFRGLDEAVADLSEVIGTSARQRDMTITIVSPEEAARLAVGTLANFARGGARAGYMFGSERNGLTNEDLVYADRILQIPTNPAFSSLNLGQAVQICG 230          
BLAST of EWM29087.1 vs. NCBI_GenBank
Match: gi|501060156|ref|WP_012111502.1| (RNA methyltransferase [Parvibaculum lavamentivorans] >gi|154156973|gb|ABS64190.1| RNA methyltransferase, TrmH family, group 1 [Parvibaculum lavamentivorans DS-1])

HSP 1 Score: 156.762 bits (395), Expect = 1.030e-43
Identity = 91/180 (50.56%), Postives = 117/180 (65.00%), Query Frame = 0
Query:   50 MSSTDRSVRQPKKTIAYEAALKDRGAPAVILVRPYLDENVGSCARAMLNFGLTDLRIIDPFCDHLTPMARARASGADNVLEGARVFRGLDEAVADLSEVIGTSARQRDMTITIVSPEEAA---RLAVGTLANFARGGARAGYMFGSERNGLTNEDLVYADRILQIPTNPAFSSLNLGQAV 226
            M+ TD++ +        + AL++ G PAVILV P L EN+G+ ARAMLNFGLTDLR++ P        ARA ASGAD V++GAR+F    EA+ADL  VI T+AR RDM   I++PE AA   R+A G        G RAG +FG ER GL N+D+V AD ++ +P NPAF+SLNL Q V
Sbjct:    1 MAGTDQTRK--------DEALREAG-PAVILVAPQLGENIGTAARAMLNFGLTDLRLVRPRDGWPNERARAAASGADEVIDGARLFATTAEAIADLDYVIATTARSRDMVKPILTPETAATQMRVAFG-------AGGRAGLLFGPERTGLENDDIVLADALMMVPVNPAFASLNLAQCV 164          
BLAST of EWM29087.1 vs. NCBI_GenBank
Match: gi|502740010|ref|WP_012974994.1| (RNA methyltransferase [Azospirillum lipoferum] >gi|288911581|dbj|BAI73070.1| tRNA/rRNA methyltransferase [Azospirillum sp. B510])

HSP 1 Score: 155.606 bits (392), Expect = 2.774e-43
Identity = 83/157 (52.87%), Postives = 100/157 (63.69%), Query Frame = 0
Query:   74 GAPAVILVRPYLDENVGSCARAMLNFGLTDLRIIDPFCDHLTPMARARASGADNVLEGARVFRGLDEAVADLSEVIGTSARQRDMTITIVSPEEAARLAVGTLANFARGGARAGYMFGSERNGLTNEDLVYADRILQIPTNPAFSSLNLGQAVQICG 230
            G PAVILV+P L EN+G+CARAMLN GLTDLR++ P      P A A ASGAD V+E AR+F    EAVADL  V  T+ R RDM    V+P    R+A G +      G + G MFG ER GL N+DL  A  ++ +P NPAFSSLNL QAV + G
Sbjct:   14 GGPAVILVQPQLGENIGACARAMLNCGLTDLRLVKPRDGWPNPKANAAASGADPVIENARIFETTAEAVADLEAVFATTVRTRDMIQRFVTP----RVAAGEMRERYAAGQKLGVMFGPERTGLVNDDLTLAQTLVTVPLNPAFSSLNLAQAVLLIG 166          
BLAST of EWM29087.1 vs. NCBI_GenBank
Match: gi|504014712|ref|WP_014248706.1| (RNA methyltransferase [Azospirillum lipoferum] >gi|357424842|emb|CBS87722.1| putative tRNA/rRNA methyltransferase [Azospirillum lipoferum 4B])

HSP 1 Score: 154.066 bits (388), Expect = 1.022e-42
Identity = 81/157 (51.59%), Postives = 101/157 (64.33%), Query Frame = 0
Query:   74 GAPAVILVRPYLDENVGSCARAMLNFGLTDLRIIDPFCDHLTPMARARASGADNVLEGARVFRGLDEAVADLSEVIGTSARQRDMTITIVSPEEAARLAVGTLANFARGGARAGYMFGSERNGLTNEDLVYADRILQIPTNPAFSSLNLGQAVQICG 230
            G PAVILV+P L EN+G+CARAMLN GLTDLR++ P      P A A ASGAD V++ A++F    EAVADL  V  T+ R RDM    V+P    R+A G +      G + G MFG ER GL N+DL +A  ++ +P NPAFSSLNL QAV + G
Sbjct:   14 GGPAVILVQPQLGENIGACARAMLNCGLTDLRLVKPRDGWPNPKASAAASGADLVIDNAKIFETTAEAVADLEAVYATTVRTRDMIQRFVTP----RVAAGEMRERYAAGQKVGAMFGPERTGLVNDDLTFAQTLVTVPLNPAFSSLNLAQAVLLIG 166          
BLAST of EWM29087.1 vs. NCBI_GenBank
Match: gi|1184520149|ref|WP_085090169.1| (rRNA methyltransferase [Azospirillum oryzae] >gi|1182757177|emb|SMF82770.1| tRNA/rRNA methyltransferase [Azospirillum oryzae])

HSP 1 Score: 154.066 bits (388), Expect = 1.045e-42
Identity = 81/157 (51.59%), Postives = 101/157 (64.33%), Query Frame = 0
Query:   74 GAPAVILVRPYLDENVGSCARAMLNFGLTDLRIIDPFCDHLTPMARARASGADNVLEGARVFRGLDEAVADLSEVIGTSARQRDMTITIVSPEEAARLAVGTLANFARGGARAGYMFGSERNGLTNEDLVYADRILQIPTNPAFSSLNLGQAVQICG 230
            G PAVILV+P L EN+G+CARAMLN GLTDLR++ P      P A A ASGAD V++ A++F    EAVADL  V  T+ R RDM    V+P    R+A G +      G + G MFG ER GL N+DL +A  ++ +P NPAFSSLNL QAV + G
Sbjct:   14 GGPAVILVQPQLGENIGACARAMLNCGLTDLRLVKPRDGWPNPKASAAASGADLVIDNAKIFETTAEAVADLEAVYATTVRTRDMIQRFVTP----RVAAGEMRERYAAGQKVGVMFGPERTGLVNDDLTFAQTLVTVPLNPAFSSLNLAQAVLLIG 166          
BLAST of EWM29087.1 vs. NCBI_GenBank
Match: gi|757141138|ref|WP_042695371.1| (rRNA methyltransferase [Azospirillum sp. B506])

HSP 1 Score: 152.91 bits (385), Expect = 3.379e-42
Identity = 82/157 (52.23%), Postives = 100/157 (63.69%), Query Frame = 0
Query:   74 GAPAVILVRPYLDENVGSCARAMLNFGLTDLRIIDPFCDHLTPMARARASGADNVLEGARVFRGLDEAVADLSEVIGTSARQRDMTITIVSPEEAARLAVGTLANFARGGARAGYMFGSERNGLTNEDLVYADRILQIPTNPAFSSLNLGQAVQICG 230
            G PAVILV+P L EN+G+CARAMLN GLTDLR++ P      P A A ASGAD V++ AR+F    EAVADL  V  T+ R RDM    V+P    R+A G +      G + G MFG ER GL N+DL  A  ++ +P NPAFSSLNL QAV + G
Sbjct:   14 GGPAVILVQPQLGENIGACARAMLNCGLTDLRLVKPRDGWPNPKANAAASGADLVIDNARIFETTAEAVADLEAVYATTVRTRDMIQRFVTP----RVAAGEMRERYAAGQKVGVMFGPERTGLFNDDLTLAQTLVTVPLNPAFSSLNLAQAVLLIG 166          
BLAST of EWM29087.1 vs. NCBI_GenBank
Match: gi|1189883716|ref|WP_085883805.1| (rRNA methyltransferase [Oceanibacterium hippocampi] >gi|1188043393|emb|SLN56442.1| putative tRNA/rRNA methyltransferase [Oceanibacterium hippocampi])

HSP 1 Score: 152.91 bits (385), Expect = 3.819e-42
Identity = 81/157 (51.59%), Postives = 105/157 (66.88%), Query Frame = 0
Query:   74 GAPAVILVRPYLDENVGSCARAMLNFGLTDLRIIDPFCDHLTPMARARASGADNVLEGARVFRGLDEAVADLSEVIGTSARQRDMTITIVSPEEAARLAVGTLANFARGGARAGYMFGSERNGLTNEDLVYADRILQIPTNPAFSSLNLGQAVQICG 230
            G PA+ILV P L EN+G+ ARAMLNFGLTDLR++ P      P A+A AS AD V++ AR+F    EA+ADLS V  T+ARQRDM+  + +P EAA      +    + GA  G +FG ER GL N+D+V AD +L +P NPAF+S+NL QAV + G
Sbjct:   13 GGPAIILVEPQLGENIGAAARAMLNFGLTDLRLVKPRDGWPNPRAKALASRADMVIDNARLFDSTAEAIADLSRVYATTARQRDMSKRVATPAEAA----DEMRAAYQAGATCGVLFGGERAGLHNDDIVLADTVLTVPLNPAFASINLAQAVLLIG 165          
BLAST of EWM29087.1 vs. NCBI_GenBank
Match: gi|1027699753|ref|WP_063635268.1| (rRNA methyltransferase [Azospirillum humicireducens] >gi|1026295863|gb|ANC92202.1| rRNA methyltransferase [Azospirillum humicireducens])

HSP 1 Score: 152.525 bits (384), Expect = 4.471e-42
Identity = 80/157 (50.96%), Postives = 101/157 (64.33%), Query Frame = 0
Query:   74 GAPAVILVRPYLDENVGSCARAMLNFGLTDLRIIDPFCDHLTPMARARASGADNVLEGARVFRGLDEAVADLSEVIGTSARQRDMTITIVSPEEAARLAVGTLANFARGGARAGYMFGSERNGLTNEDLVYADRILQIPTNPAFSSLNLGQAVQICG 230
            G PAVILV+P L EN+G+CARAMLN GLTDLR++ P      P A A ASGAD V++ A++F    +AVADL  V  T+ R RDM    V+P    R+A G +      G + G MFG ER GL N+DL +A  ++ +P NPAFSSLNL QAV + G
Sbjct:   14 GGPAVILVQPQLGENIGACARAMLNCGLTDLRLVKPRDGWPNPKASAAASGADLVIDNAKIFETTADAVADLEAVYATTVRTRDMIQRFVTP----RVAAGEMRERYAAGQKVGVMFGPERTGLVNDDLTFAQTLVTVPLNPAFSSLNLAQAVLLIG 166          
BLAST of EWM29087.1 vs. NCBI_GenBank
Match: gi|780515810|ref|WP_045580966.1| (rRNA methyltransferase [Azospirillum thiophilum] >gi|778296490|gb|KJR65662.1| rRNA methyltransferase [Azospirillum thiophilum] >gi|933520352|gb|ALG70671.1| rRNA methyltransferase [Azospirillum thiophilum])

HSP 1 Score: 151.369 bits (381), Expect = 1.160e-41
Identity = 81/157 (51.59%), Postives = 100/157 (63.69%), Query Frame = 0
Query:   74 GAPAVILVRPYLDENVGSCARAMLNFGLTDLRIIDPFCDHLTPMARARASGADNVLEGARVFRGLDEAVADLSEVIGTSARQRDMTITIVSPEEAARLAVGTLANFARGGARAGYMFGSERNGLTNEDLVYADRILQIPTNPAFSSLNLGQAVQICG 230
            G PAVILV+P L EN+G+CARAMLN GLTDLR++ P      P A A ASGAD V++ AR+F    +AVADL  V  T+ R RDM    V+P    R+A G +      G + G MFG ER GL N+DL  A  ++ +P NPAFSSLNL QAV + G
Sbjct:   14 GGPAVILVQPQLGENIGACARAMLNCGLTDLRLVSPRDGWPNPKATAAASGADIVIDNARIFETTADAVADLEAVYATTVRTRDMIQRFVTP----RVAAGEMRERYAAGQKVGVMFGPERTGLFNDDLTLAQTLVTVPLNPAFSSLNLAQAVLLIG 166          
BLAST of EWM29087.1 vs. NCBI_GenBank
Match: gi|501561717|ref|WP_012566192.1| (RNA methyltransferase [Rhodospirillum centenum] >gi|209957766|gb|ACI98402.1| RNA methyltransferase, TrmH family, group 1 [Rhodospirillum centenum SW])

HSP 1 Score: 151.754 bits (382), Expect = 1.242e-41
Identity = 81/160 (50.62%), Postives = 104/160 (65.00%), Query Frame = 0
Query:   67 EAALKDRGAPAVILVRPYLDENVGSCARAMLNFGLTDLRIIDPFCDHLTPMARARASGADNVLEGARVFRGLDEAVADLSEVIGTSARQRDMTITIVSPEEAARLAVGTLANFARGGARAGYMFGSERNGLTNEDLVYADRILQIPTNPAFSSLNLGQAV 226
            +AAL  +G P VILV P + EN+G+CARAMLN GLT+LR+++P        A A ++GA  VL+ ARVF G  EA+ADL +V  T+AR RDM   IV+P  AAR     L      G R G +FG ER GL N+D+V +D ++ +P NP FSSLNL QAV
Sbjct:   14 QAALNAQGGPVVILVEPQMGENIGACARAMLNCGLTELRLVNPRDGWPNEKAVAASAGATEVLDRARVFTGTREAIADLHKVYATAARVRDMVKDIVTPRRAAR----DLHAHVAAGRRVGILFGPERTGLVNDDIVLSDTMISVPLNPGFSSLNLAQAV 169          
The following BLAST results are available for this feature:
BLAST of EWM29087.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111606|gb|EWM29087.1|2.691e-168100.00trna rrna methyltransferase [Nannochloropsis gadit... [more]
gi|501060156|ref|WP_012111502.1|1.030e-4350.56RNA methyltransferase [Parvibaculum lavamentivoran... [more]
gi|502740010|ref|WP_012974994.1|2.774e-4352.87RNA methyltransferase [Azospirillum lipoferum] >gi... [more]
gi|504014712|ref|WP_014248706.1|1.022e-4251.59RNA methyltransferase [Azospirillum lipoferum] >gi... [more]
gi|1184520149|ref|WP_085090169.1|1.045e-4251.59rRNA methyltransferase [Azospirillum oryzae] >gi|1... [more]
gi|757141138|ref|WP_042695371.1|3.379e-4252.23rRNA methyltransferase [Azospirillum sp. B506][more]
gi|1189883716|ref|WP_085883805.1|3.819e-4251.59rRNA methyltransferase [Oceanibacterium hippocampi... [more]
gi|1027699753|ref|WP_063635268.1|4.471e-4250.96rRNA methyltransferase [Azospirillum humicireducen... [more]
gi|780515810|ref|WP_045580966.1|1.160e-4151.59rRNA methyltransferase [Azospirillum thiophilum] >... [more]
gi|501561717|ref|WP_012566192.1|1.242e-4150.63RNA methyltransferase [Rhodospirillum centenum] >g... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1574rna1574Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications