EWM29087.1, cds1570 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29087.1 vs. NCBI_GenBank
Match: gi|585111606|gb|EWM29087.1| (trna rrna methyltransferase [Nannochloropsis gaditana]) HSP 1 Score: 471.855 bits (1213), Expect = 2.691e-168 Identity = 230/230 (100.00%), Postives = 230/230 (100.00%), Query Frame = 0
Query: 1 MRALRSICVSLILHLHLAKVGRGFMMALWDTSTPKIDPNYHSRSLRAMTMSSTDRSVRQPKKTIAYEAALKDRGAPAVILVRPYLDENVGSCARAMLNFGLTDLRIIDPFCDHLTPMARARASGADNVLEGARVFRGLDEAVADLSEVIGTSARQRDMTITIVSPEEAARLAVGTLANFARGGARAGYMFGSERNGLTNEDLVYADRILQIPTNPAFSSLNLGQAVQICG 230
MRALRSICVSLILHLHLAKVGRGFMMALWDTSTPKIDPNYHSRSLRAMTMSSTDRSVRQPKKTIAYEAALKDRGAPAVILVRPYLDENVGSCARAMLNFGLTDLRIIDPFCDHLTPMARARASGADNVLEGARVFRGLDEAVADLSEVIGTSARQRDMTITIVSPEEAARLAVGTLANFARGGARAGYMFGSERNGLTNEDLVYADRILQIPTNPAFSSLNLGQAVQICG
Sbjct: 1 MRALRSICVSLILHLHLAKVGRGFMMALWDTSTPKIDPNYHSRSLRAMTMSSTDRSVRQPKKTIAYEAALKDRGAPAVILVRPYLDENVGSCARAMLNFGLTDLRIIDPFCDHLTPMARARASGADNVLEGARVFRGLDEAVADLSEVIGTSARQRDMTITIVSPEEAARLAVGTLANFARGGARAGYMFGSERNGLTNEDLVYADRILQIPTNPAFSSLNLGQAVQICG 230
BLAST of EWM29087.1 vs. NCBI_GenBank
Match: gi|501060156|ref|WP_012111502.1| (RNA methyltransferase [Parvibaculum lavamentivorans] >gi|154156973|gb|ABS64190.1| RNA methyltransferase, TrmH family, group 1 [Parvibaculum lavamentivorans DS-1]) HSP 1 Score: 156.762 bits (395), Expect = 1.030e-43 Identity = 91/180 (50.56%), Postives = 117/180 (65.00%), Query Frame = 0
Query: 50 MSSTDRSVRQPKKTIAYEAALKDRGAPAVILVRPYLDENVGSCARAMLNFGLTDLRIIDPFCDHLTPMARARASGADNVLEGARVFRGLDEAVADLSEVIGTSARQRDMTITIVSPEEAA---RLAVGTLANFARGGARAGYMFGSERNGLTNEDLVYADRILQIPTNPAFSSLNLGQAV 226
M+ TD++ + + AL++ G PAVILV P L EN+G+ ARAMLNFGLTDLR++ P ARA ASGAD V++GAR+F EA+ADL VI T+AR RDM I++PE AA R+A G G RAG +FG ER GL N+D+V AD ++ +P NPAF+SLNL Q V
Sbjct: 1 MAGTDQTRK--------DEALREAG-PAVILVAPQLGENIGTAARAMLNFGLTDLRLVRPRDGWPNERARAAASGADEVIDGARLFATTAEAIADLDYVIATTARSRDMVKPILTPETAATQMRVAFG-------AGGRAGLLFGPERTGLENDDIVLADALMMVPVNPAFASLNLAQCV 164
BLAST of EWM29087.1 vs. NCBI_GenBank
Match: gi|502740010|ref|WP_012974994.1| (RNA methyltransferase [Azospirillum lipoferum] >gi|288911581|dbj|BAI73070.1| tRNA/rRNA methyltransferase [Azospirillum sp. B510]) HSP 1 Score: 155.606 bits (392), Expect = 2.774e-43 Identity = 83/157 (52.87%), Postives = 100/157 (63.69%), Query Frame = 0
Query: 74 GAPAVILVRPYLDENVGSCARAMLNFGLTDLRIIDPFCDHLTPMARARASGADNVLEGARVFRGLDEAVADLSEVIGTSARQRDMTITIVSPEEAARLAVGTLANFARGGARAGYMFGSERNGLTNEDLVYADRILQIPTNPAFSSLNLGQAVQICG 230
G PAVILV+P L EN+G+CARAMLN GLTDLR++ P P A A ASGAD V+E AR+F EAVADL V T+ R RDM V+P R+A G + G + G MFG ER GL N+DL A ++ +P NPAFSSLNL QAV + G
Sbjct: 14 GGPAVILVQPQLGENIGACARAMLNCGLTDLRLVKPRDGWPNPKANAAASGADPVIENARIFETTAEAVADLEAVFATTVRTRDMIQRFVTP----RVAAGEMRERYAAGQKLGVMFGPERTGLVNDDLTLAQTLVTVPLNPAFSSLNLAQAVLLIG 166
BLAST of EWM29087.1 vs. NCBI_GenBank
Match: gi|504014712|ref|WP_014248706.1| (RNA methyltransferase [Azospirillum lipoferum] >gi|357424842|emb|CBS87722.1| putative tRNA/rRNA methyltransferase [Azospirillum lipoferum 4B]) HSP 1 Score: 154.066 bits (388), Expect = 1.022e-42 Identity = 81/157 (51.59%), Postives = 101/157 (64.33%), Query Frame = 0
Query: 74 GAPAVILVRPYLDENVGSCARAMLNFGLTDLRIIDPFCDHLTPMARARASGADNVLEGARVFRGLDEAVADLSEVIGTSARQRDMTITIVSPEEAARLAVGTLANFARGGARAGYMFGSERNGLTNEDLVYADRILQIPTNPAFSSLNLGQAVQICG 230
G PAVILV+P L EN+G+CARAMLN GLTDLR++ P P A A ASGAD V++ A++F EAVADL V T+ R RDM V+P R+A G + G + G MFG ER GL N+DL +A ++ +P NPAFSSLNL QAV + G
Sbjct: 14 GGPAVILVQPQLGENIGACARAMLNCGLTDLRLVKPRDGWPNPKASAAASGADLVIDNAKIFETTAEAVADLEAVYATTVRTRDMIQRFVTP----RVAAGEMRERYAAGQKVGAMFGPERTGLVNDDLTFAQTLVTVPLNPAFSSLNLAQAVLLIG 166
BLAST of EWM29087.1 vs. NCBI_GenBank
Match: gi|1184520149|ref|WP_085090169.1| (rRNA methyltransferase [Azospirillum oryzae] >gi|1182757177|emb|SMF82770.1| tRNA/rRNA methyltransferase [Azospirillum oryzae]) HSP 1 Score: 154.066 bits (388), Expect = 1.045e-42 Identity = 81/157 (51.59%), Postives = 101/157 (64.33%), Query Frame = 0
Query: 74 GAPAVILVRPYLDENVGSCARAMLNFGLTDLRIIDPFCDHLTPMARARASGADNVLEGARVFRGLDEAVADLSEVIGTSARQRDMTITIVSPEEAARLAVGTLANFARGGARAGYMFGSERNGLTNEDLVYADRILQIPTNPAFSSLNLGQAVQICG 230
G PAVILV+P L EN+G+CARAMLN GLTDLR++ P P A A ASGAD V++ A++F EAVADL V T+ R RDM V+P R+A G + G + G MFG ER GL N+DL +A ++ +P NPAFSSLNL QAV + G
Sbjct: 14 GGPAVILVQPQLGENIGACARAMLNCGLTDLRLVKPRDGWPNPKASAAASGADLVIDNAKIFETTAEAVADLEAVYATTVRTRDMIQRFVTP----RVAAGEMRERYAAGQKVGVMFGPERTGLVNDDLTFAQTLVTVPLNPAFSSLNLAQAVLLIG 166
BLAST of EWM29087.1 vs. NCBI_GenBank
Match: gi|757141138|ref|WP_042695371.1| (rRNA methyltransferase [Azospirillum sp. B506]) HSP 1 Score: 152.91 bits (385), Expect = 3.379e-42 Identity = 82/157 (52.23%), Postives = 100/157 (63.69%), Query Frame = 0
Query: 74 GAPAVILVRPYLDENVGSCARAMLNFGLTDLRIIDPFCDHLTPMARARASGADNVLEGARVFRGLDEAVADLSEVIGTSARQRDMTITIVSPEEAARLAVGTLANFARGGARAGYMFGSERNGLTNEDLVYADRILQIPTNPAFSSLNLGQAVQICG 230
G PAVILV+P L EN+G+CARAMLN GLTDLR++ P P A A ASGAD V++ AR+F EAVADL V T+ R RDM V+P R+A G + G + G MFG ER GL N+DL A ++ +P NPAFSSLNL QAV + G
Sbjct: 14 GGPAVILVQPQLGENIGACARAMLNCGLTDLRLVKPRDGWPNPKANAAASGADLVIDNARIFETTAEAVADLEAVYATTVRTRDMIQRFVTP----RVAAGEMRERYAAGQKVGVMFGPERTGLFNDDLTLAQTLVTVPLNPAFSSLNLAQAVLLIG 166
BLAST of EWM29087.1 vs. NCBI_GenBank
Match: gi|1189883716|ref|WP_085883805.1| (rRNA methyltransferase [Oceanibacterium hippocampi] >gi|1188043393|emb|SLN56442.1| putative tRNA/rRNA methyltransferase [Oceanibacterium hippocampi]) HSP 1 Score: 152.91 bits (385), Expect = 3.819e-42 Identity = 81/157 (51.59%), Postives = 105/157 (66.88%), Query Frame = 0
Query: 74 GAPAVILVRPYLDENVGSCARAMLNFGLTDLRIIDPFCDHLTPMARARASGADNVLEGARVFRGLDEAVADLSEVIGTSARQRDMTITIVSPEEAARLAVGTLANFARGGARAGYMFGSERNGLTNEDLVYADRILQIPTNPAFSSLNLGQAVQICG 230
G PA+ILV P L EN+G+ ARAMLNFGLTDLR++ P P A+A AS AD V++ AR+F EA+ADLS V T+ARQRDM+ + +P EAA + + GA G +FG ER GL N+D+V AD +L +P NPAF+S+NL QAV + G
Sbjct: 13 GGPAIILVEPQLGENIGAAARAMLNFGLTDLRLVKPRDGWPNPRAKALASRADMVIDNARLFDSTAEAIADLSRVYATTARQRDMSKRVATPAEAA----DEMRAAYQAGATCGVLFGGERAGLHNDDIVLADTVLTVPLNPAFASINLAQAVLLIG 165
BLAST of EWM29087.1 vs. NCBI_GenBank
Match: gi|1027699753|ref|WP_063635268.1| (rRNA methyltransferase [Azospirillum humicireducens] >gi|1026295863|gb|ANC92202.1| rRNA methyltransferase [Azospirillum humicireducens]) HSP 1 Score: 152.525 bits (384), Expect = 4.471e-42 Identity = 80/157 (50.96%), Postives = 101/157 (64.33%), Query Frame = 0
Query: 74 GAPAVILVRPYLDENVGSCARAMLNFGLTDLRIIDPFCDHLTPMARARASGADNVLEGARVFRGLDEAVADLSEVIGTSARQRDMTITIVSPEEAARLAVGTLANFARGGARAGYMFGSERNGLTNEDLVYADRILQIPTNPAFSSLNLGQAVQICG 230
G PAVILV+P L EN+G+CARAMLN GLTDLR++ P P A A ASGAD V++ A++F +AVADL V T+ R RDM V+P R+A G + G + G MFG ER GL N+DL +A ++ +P NPAFSSLNL QAV + G
Sbjct: 14 GGPAVILVQPQLGENIGACARAMLNCGLTDLRLVKPRDGWPNPKASAAASGADLVIDNAKIFETTADAVADLEAVYATTVRTRDMIQRFVTP----RVAAGEMRERYAAGQKVGVMFGPERTGLVNDDLTFAQTLVTVPLNPAFSSLNLAQAVLLIG 166
BLAST of EWM29087.1 vs. NCBI_GenBank
Match: gi|780515810|ref|WP_045580966.1| (rRNA methyltransferase [Azospirillum thiophilum] >gi|778296490|gb|KJR65662.1| rRNA methyltransferase [Azospirillum thiophilum] >gi|933520352|gb|ALG70671.1| rRNA methyltransferase [Azospirillum thiophilum]) HSP 1 Score: 151.369 bits (381), Expect = 1.160e-41 Identity = 81/157 (51.59%), Postives = 100/157 (63.69%), Query Frame = 0
Query: 74 GAPAVILVRPYLDENVGSCARAMLNFGLTDLRIIDPFCDHLTPMARARASGADNVLEGARVFRGLDEAVADLSEVIGTSARQRDMTITIVSPEEAARLAVGTLANFARGGARAGYMFGSERNGLTNEDLVYADRILQIPTNPAFSSLNLGQAVQICG 230
G PAVILV+P L EN+G+CARAMLN GLTDLR++ P P A A ASGAD V++ AR+F +AVADL V T+ R RDM V+P R+A G + G + G MFG ER GL N+DL A ++ +P NPAFSSLNL QAV + G
Sbjct: 14 GGPAVILVQPQLGENIGACARAMLNCGLTDLRLVSPRDGWPNPKATAAASGADIVIDNARIFETTADAVADLEAVYATTVRTRDMIQRFVTP----RVAAGEMRERYAAGQKVGVMFGPERTGLFNDDLTLAQTLVTVPLNPAFSSLNLAQAVLLIG 166
BLAST of EWM29087.1 vs. NCBI_GenBank
Match: gi|501561717|ref|WP_012566192.1| (RNA methyltransferase [Rhodospirillum centenum] >gi|209957766|gb|ACI98402.1| RNA methyltransferase, TrmH family, group 1 [Rhodospirillum centenum SW]) HSP 1 Score: 151.754 bits (382), Expect = 1.242e-41 Identity = 81/160 (50.62%), Postives = 104/160 (65.00%), Query Frame = 0
Query: 67 EAALKDRGAPAVILVRPYLDENVGSCARAMLNFGLTDLRIIDPFCDHLTPMARARASGADNVLEGARVFRGLDEAVADLSEVIGTSARQRDMTITIVSPEEAARLAVGTLANFARGGARAGYMFGSERNGLTNEDLVYADRILQIPTNPAFSSLNLGQAV 226
+AAL +G P VILV P + EN+G+CARAMLN GLT+LR+++P A A ++GA VL+ ARVF G EA+ADL +V T+AR RDM IV+P AAR L G R G +FG ER GL N+D+V +D ++ +P NP FSSLNL QAV
Sbjct: 14 QAALNAQGGPVVILVEPQMGENIGACARAMLNCGLTELRLVNPRDGWPNEKAVAASAGATEVLDRARVFTGTREAIADLHKVYATAARVRDMVKDIVTPRRAAR----DLHAHVAAGRRVGILFGPERTGLVNDDIVLSDTMISVPLNPGFSSLNLAQAV 169 The following BLAST results are available for this feature:
BLAST of EWM29087.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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