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Properties
| Property Name | Value |
|---|
| Product | putative ribonuclease p mrp protein subunit pop5 |
| Orig transcript id | gnl|cribi|Naga_100024g64.4340.mrna |
| Orig protein id | gnl|cribi|Naga_100024g64.4340 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 1; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002457.1 | supercontig | CM002457.1:963993..965535 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna1573 ID=rna1573|Name=rna1573|organism=Nannochloropsis gaditana|type=mRNA|length=1292bp
TATCACAGTGGCATAAATGTAGGCAAAATTATAGCAAACCTAGTTGCTGT
ATTTTGAGCGAGTCTGCGGCGAAAGGGAGGCTTGAAAGTGTGCTTGTGGC
GGGGAGGGAAAGATTAAATGCAGCGAGCACGGCTTGCAGTGCTCAAGGCA
CATCTACCATACCCCATTCTCAAAAGAGTACAGAAAGATCACGGTTCAGT
GCGGTCGGGCGGGCGTGTCGATTGAGAGAAGAGGAGACGAGTAAAACGCA
TGAGGGTTCGTCTCAGATATTTAACTTGCAAGCTACATCTACGGCCTCAT
CAGGAAGGTGCTCTCAAAAAGAAAGTCACTGCGTTCGACATCCTGCGTGC
CATCAAAGAATCAGTCCAAAGCAATTTTGGGAATTTCGGGGCCGCTCCTC
TCCTTCTCTCTATGCAAGTTCGATACTACGATGAGGCCACCCAAATTTTT
ATCCTGAGGTGTCCCCGAGACAGTTTCCGATCCGTGTGGGCGGCGATGAC
ACTTGTCACAAGCTTAGGAGGCAGCATTACCAGCGGCAATAGCGGTGGCA
GAGATTCTAGTGCGATCAAGGCAAACATCAGTGTCCTTCGTGTGTCAGGA
TCAGTGCGTACTTGTCGGCTCGACGCAGTCTCCATCCTTGTGCGGGCAGC
GAATGAGTTGGAGGGTAATAATCGGCGTCCAGACCAGGAAAGCTTGATGG
CGGCATCGACAGCCTTCTACCAGGCACAGATCAGCAGTGCCATTCAAGGC
GTGTAGCAAGGGGACAGGATAAGTCGTGTACGTACGTGGCATGTGTCGAG
AGAGGCAAAGGCGCACATAGTAAAAGCGGGTGTGGCGCTCAGGAAAATTC
CCGTGCCCACGCGTACATTAATGATGCAACATTACACATCATCGCTTAAA
CAACTGCGGGCTCATGTCCATGACTTGCCGTTGTGCCGCGGTGAGACATT
ACCCTGTCAACGCTTTCCTTGCGAGGACCTGAGGAATCGATTCTTTGAGA
AAAAGCATGCGACGCATAATTTCCTCTTCTACCTTATATTTTCATACAGG
AGATGAAGAAGAATTTGTAGGCCATCGCCGCTCTTCTTCACCCTTCACAA
AATTTATTGCGCGGACCGCCCTTCCAATGTACAAAGCATTCATTGTAAAT
ATCAGGCTAGGGAATAAAAAGAACCAAAACTCGTTTTCCCCGAATCCTTT
CCTTTACATTTTTGCCATCGGGTACTGTTCCTTCAATATCACCAACCAGA
TCCCCGCTGTTTCGCCTGCTCCTCCTCCTGCCAGCCCTCCCC back to topprotein sequence of rna1573 >rna1573-protein ID=rna1573-protein|Name=rna1573|organism=Nannochloropsis gaditana|type=polypeptide|length=168bp
MRVRLRYLTCKLHLRPHQEGALKKKVTAFDILRAIKESVQSNFGNFGAAP
LLLSMQVRYYDEATQIFILRCPRDSFRSVWAAMTLVTSLGGSITSGNSGG
RDSSAIKANISVLRVSGSVRTCRLDAVSILVRAANELEGNNRRPDQESLM
AASTAFYQAQISSAIQGV back to topmRNA from alignment at CM002457.1:963993..965535+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna1573 ID=rna1573|Name=rna1573|organism=Nannochloropsis gaditana|type=mRNA|length=1543bp|location=Sequence derived from alignment at CM002457.1:963993..965535+ (Nannochloropsis gaditana)
GGCGAAAGGGAGGCTTGAAAGTGTGCttgtggcggggagggaaagattaA
ATGCAGCGAGCACGGCTTGCAGTGCTCAAGGCACATCTACCATACCCCAT
TCTCAAAAGAGTACAGAAAGATCACGGTTCAGTGCGGTCGGGCGGGCGTG
TCGAttgagagaagaggagacgagTAAAACGCATGAGGGTTCGTCTCAGA
TATTTAACTTGCAAGCTACATCTACGGCCTCATCAGGAAGGTGCTCTCAA
AAAGAAAGTCACTGCGTTCGACATCCTGCGTGCCATCAAAGTAAGTACTC
CAAGAAAAGGCACGTGGCGCCGCGCCTGTCGTTTGAGGAGATGGTCTTCT
TCGACTGGCCACAAGGACATGGGCAGACGGGCTCTGACACGAGCAACCTC
CTGGCCGAGCGACCTGCCGCACCGCAATAATGCGCGCAGCTTCATCGCTG
TGTCACACTATTGAGTCTTCTATCTCATCTTTGTGGGCataggaaaggcg
gggatcGTTGAGGCATCTCAGGAGGCTTAATGGAGTTTGCGATTTTCCCC
CCAACAAATCTGTTCATTCTCCCCCACCGTTTTATACTCATTCACACAAA
CCAAGTAGGAATCAGTCCAAAGCAATTTTGGGAATTTCGGGgccgctcct
ctccttctctctatGCAAGTTCGATACTACGATGAGGCCACCCAAATTTT
TATCCTGAGGTGTCCCCGAGACAGTTTCCGATCCGTGTGGGCGGCGATGA
CACTTGTCACAAGCTTAGGAGGCAGCATTACCAGCGGCAATAGCGGTGGC
AGAGATTCTAGTGCGATCAAGGCAAACATCAGTGTCCTTCGTGTGTCAGG
ATCAGTGCGTACTTGTCGGCTCGACGCAGTCTCCATCCTTGTGCGGGCAG
CGAATGAGTTGGAGGGTAATAATCGGCGTCCAGACCAGGAAAGCTTGATG
GCGGCATCGACAGCCTTCTACCAGGCACAGATCAGCAGTGCCATTCAAGG
CGTGTAGCAAGGGGACAGGATAAGTCGTGTACGTACGTGGCATGTGTCGA
GAGAGGCAAAGGCGCACATAGTAAAAGCGGGTGTGGCGCTCAGGAAAATT
CCCGTGCCCACGCGTACATTAATGATGCAACATTACACATCATCGCTTAA
ACAACTGCGGGCTCATGTCCATGACTTGCCGTTGTGCCGCGGTGAGACAT
TACCCTGTCAACGCTTTCCTTGCGAGGACCTGAGGAATCGATTCTTTGAG
AAAAAGCATGCGACGCATAATTTCCTCTTCTACCTTATATTTTCATAcag
gagatgaagaagaattTGTAGGCCATCGCCGCTCTTCTTCACCCTTCACA
AAATTTATTGCGCGGACCGCCCTTCCAATGTACAAAGCATTCATTGTAAA
TATCAGGCTAGGGAATAAAAAGAACCAAAACTCGTTTTCCCCGAATCCTT
TCCTTTACATTTTTGCCATCGGGTACTGTTCCTTCAATATCACCAACCAG
ATCCCCGCTGtttcgcctgctcctcctcctgccagccctcccc back to topCoding sequence (CDS) from alignment at CM002457.1:963993..965535+ >rna1573 ID=rna1573|Name=rna1573|organism=Nannochloropsis gaditana|type=CDS|length=1014bp|location=Sequence derived from alignment at CM002457.1:963993..965535+ (Nannochloropsis gaditana)
ATGAGGGTTCGTCTCAGATATTTAACTTGCAAGCTACATCTACGGCCTCA
TCAGGAAGGTGCTCTCAAAAAGAAAGTCACTGCGTTCGACATCCTGCGTG
CCATCAAAGAATCAGTCCAAAGCAATTTTGGGAATTTCGGGgccgctcct
ctccttctctctatGCAAGTTCGATACTACGATGAGGCCACCCAAATTTT
TATCCTGAGGTGTCCCCGAGACAGTTTCCGATCCGTGTGGGCGGCGATGA
CACTTGTCACAAGCTTAGGAGGCAGCATTACCAGCGGCAATAGCGGTGGC
AGAGATTCTAGTGCGATCAAGGCAAACATCAGTGTCCTTCGTGTGTCAGG
ATCAGTGCGTACTTGTCGGCTCGACGCAGTCTCCATCCTTGTGCGGGCAG
CGAATGAGTTGGAGGGTAATAATCGGCGTCCAGACCAGGAAAGCTTGATG
GCGGCATCGACAGCCTTCTACCAGGCACAGATCAGCAGTGCCATTCAAGG
CGTGTAGATGAGGGTTCGTCTCAGATATTTAACTTGCAAGCTACATCTAC
GGCCTCATCAGGAAGGTGCTCTCAAAAAGAAAGTCACTGCGTTCGACATC
CTGCGTGCCATCAAAGAATCAGTCCAAAGCAATTTTGGGAATTTCGGGgc
cgctcctctccttctctctatGCAAGTTCGATACTACGATGAGGCCACCC
AAATTTTTATCCTGAGGTGTCCCCGAGACAGTTTCCGATCCGTGTGGGCG
GCGATGACACTTGTCACAAGCTTAGGAGGCAGCATTACCAGCGGCAATAG
CGGTGGCAGAGATTCTAGTGCGATCAAGGCAAACATCAGTGTCCTTCGTG
TGTCAGGATCAGTGCGTACTTGTCGGCTCGACGCAGTCTCCATCCTTGTG
CGGGCAGCGAATGAGTTGGAGGGTAATAATCGGCGTCCAGACCAGGAAAG
CTTGATGGCGGCATCGACAGCCTTCTACCAGGCACAGATCAGCAGTGCCA
TTCAAGGCGTGTAG back to top
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