EWM29082.1, cds1569 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29082.1 vs. NCBI_GenBank
Match: gi|585111601|gb|EWM29082.1| (putative ribonuclease p mrp protein subunit pop5 [Nannochloropsis gaditana] >gi|585111602|gb|EWM29083.1| putative ribonuclease p mrp protein subunit pop5 [Nannochloropsis gaditana]) HSP 1 Score: 345.125 bits (884), Expect = 2.828e-120 Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0 Query: 1 MRVRLRYLTCKLHLRPHQEGALKKKVTAFDILRAIKESVQSNFGNFGAAPLLLSMQVRYYDEATQIFILRCPRDSFRSVWAAMTLVTSLGGSITSGNSGGRDSSAIKANISVLRVSGSVRTCRLDAVSILVRAANELEGNNRRPDQESLMAASTAFYQAQISSAIQGV 168 MRVRLRYLTCKLHLRPHQEGALKKKVTAFDILRAIKESVQSNFGNFGAAPLLLSMQVRYYDEATQIFILRCPRDSFRSVWAAMTLVTSLGGSITSGNSGGRDSSAIKANISVLRVSGSVRTCRLDAVSILVRAANELEGNNRRPDQESLMAASTAFYQAQISSAIQGV Sbjct: 1 MRVRLRYLTCKLHLRPHQEGALKKKVTAFDILRAIKESVQSNFGNFGAAPLLLSMQVRYYDEATQIFILRCPRDSFRSVWAAMTLVTSLGGSITSGNSGGRDSSAIKANISVLRVSGSVRTCRLDAVSILVRAANELEGNNRRPDQESLMAASTAFYQAQISSAIQGV 168
BLAST of EWM29082.1 vs. NCBI_GenBank
Match: gi|567853425|ref|XP_006419876.1| (hypothetical protein CICLE_v10006132mg [Citrus clementina] >gi|557521749|gb|ESR33116.1| hypothetical protein CICLE_v10006132mg [Citrus clementina]) HSP 1 Score: 76.6406 bits (187), Expect = 1.177e-14 Identity = 42/120 (35.00%), Postives = 68/120 (56.67%), Query Frame = 0 Query: 6 RYLTCKLHLRPHQEGALKKKV--TAFDILRAIKESVQSNFGNFGAAPLLLSMQVRYYDEATQIFILRCPRDSFRSVWAAMTLVTSLGGSITSGNSGGRDSSAIKANISVLRVSGSVRTCR 123 RY+ ++ L P++E + V T F++ +AI++S+ NFG G A LL S QV+Y + T++ I+R R+ + VW+AMT+V S+G + N VL +SGS+R C+ Sbjct: 7 RYMVVEVFLDPNKELPVDDPVILTQFNVSKAIRDSILVNFGECGLASLLGSFQVKYVNPITKLCIIRASREDCQKVWSAMTMVRSIGNCLVLFN--------------VLDLSGSIRACK 112
BLAST of EWM29082.1 vs. NCBI_GenBank
Match: gi|848853457|ref|XP_012843722.1| (PREDICTED: probable ribonuclease P/MRP protein subunit POP5 [Erythranthe guttata] >gi|604347039|gb|EYU45343.1| hypothetical protein MIMGU_mgv1a015535mg [Erythranthe guttata]) HSP 1 Score: 76.2554 bits (186), Expect = 1.366e-14 Identity = 41/124 (33.06%), Postives = 69/124 (55.65%), Query Frame = 0 Query: 6 RYLTCKLHLRPHQEGALKKKV--TAFDILRAIKESVQSNFGNFGAAPLLLSMQVRYYDEATQIFILRCPRDSFRSVWAAMTLVTSLGGSITSGNSGGRDSSAIKANISVLRVSGSVRTCRLDAV 127 RY+ ++ L P+++ +L + T ++ AIKES+ +NFG G A + S QV+Y + T+I I R R+ ++ VWAA+T+V S+G N +L +SGS+R C++ A+ Sbjct: 7 RYMVMEVFLDPNKDNSLHDPIIITQLNLSNAIKESILTNFGECGLASSMHSFQVKYVNPITKICIFRTSREEYQKVWAAITMVKSIGNCPVVFN--------------LLDLSGSIRACKIAAL 116
BLAST of EWM29082.1 vs. NCBI_GenBank
Match: gi|1009127821|ref|XP_015880898.1| (PREDICTED: probable ribonuclease P/MRP protein subunit POP5 [Ziziphus jujuba] >gi|1009172059|ref|XP_015867066.1| PREDICTED: probable ribonuclease P/MRP protein subunit POP5 [Ziziphus jujuba] >gi|1009172061|ref|XP_015867067.1| PREDICTED: probable ribonuclease P/MRP protein subunit POP5 [Ziziphus jujuba] >gi|1009172063|ref|XP_015867068.1| PREDICTED: probable ribonuclease P/MRP protein subunit POP5 [Ziziphus jujuba]) HSP 1 Score: 76.2554 bits (186), Expect = 1.726e-14 Identity = 41/124 (33.06%), Postives = 72/124 (58.06%), Query Frame = 0 Query: 6 RYLTCKLHLRPHQEGALKKKV--TAFDILRAIKESVQSNFGNFGAAPLLLSMQVRYYDEATQIFILRCPRDSFRSVWAAMTLVTSLGGSITSGNSGGRDSSAIKANISVLRVSGSVRTCRLDAV 127 RYL +++L P++E + T++++ +AIK+S+ NFG G A L S QV+Y + T++ I+R R+ ++ VW+A+T+V S+G S + I +L +SGS++ CR A+ Sbjct: 7 RYLVVEVNLNPNRETVTNDPIILTSYNVTKAIKDSILLNFGECGLASSLGSFQVKYVNYITKLCIIRASREEYQKVWSAITMVRSIGNSPVA--------------IYLLDLSGSIKACRTAAL 116
BLAST of EWM29082.1 vs. NCBI_GenBank
Match: gi|575473974|ref|XP_006676280.1| (hypothetical protein BATDEDRAFT_85526 [Batrachochytrium dendrobatidis JAM81] >gi|328773898|gb|EGF83935.1| hypothetical protein BATDEDRAFT_85526 [Batrachochytrium dendrobatidis JAM81] >gi|1028567934|gb|OAJ36238.1| hypothetical protein BDEG_20434 [Batrachochytrium dendrobatidis JEL423]) HSP 1 Score: 73.9442 bits (180), Expect = 6.191e-14 Identity = 41/120 (34.17%), Postives = 67/120 (55.83%), Query Frame = 0 Query: 1 MRVRLRYLTCKLHLRPHQEGALKKKVTAFDILRAIKESVQSNFGNFGAAPLLLSMQVRYYDEATQIFILRCPRDSFRSVWAAMTLVTSLGGSI-------TSGNSGGRDSSAIKANISVL 113 +R + RYL C++ + G + + + + IL AIKES+ +NFG FG L +S+QV+Y++ T + I+R RD R VWA ++L+T++ I G S AIK N +++ Sbjct: 2 VRFKNRYLLCEI---IFENGKISESLNLYQILNAIKESLSTNFGVFGLGVLAISLQVKYFNPFTGLAIVRVNRDYMRLVWACVSLITAINKRICMVKVVHVGGTIKLVQSQAIKYNQTII 118
BLAST of EWM29082.1 vs. NCBI_GenBank
Match: gi|470144570|ref|XP_004307927.1| (PREDICTED: probable ribonuclease P/MRP protein subunit POP5 [Fragaria vesca subsp. vesca] >gi|764635847|ref|XP_011470163.1| PREDICTED: probable ribonuclease P/MRP protein subunit POP5 [Fragaria vesca subsp. vesca]) HSP 1 Score: 74.7146 bits (182), Expect = 7.179e-14 Identity = 44/124 (35.48%), Postives = 72/124 (58.06%), Query Frame = 0 Query: 6 RYLTCKLHLRPHQEGALKKKV--TAFDILRAIKESVQSNFGNFGAAPLLLSMQVRYYDEATQIFILRCPRDSFRSVWAAMTLVTSLGGSITSGNSGGRDSSAIKANISVLRVSGSVRTCRLDAV 127 RY+T ++ L P++E A K V T +++ +A+K+S+ NFG G A L S QV+Y +E T++ I+R R+ + VW+A+T+V S+ D I ++L +SGS+R CR A+ Sbjct: 7 RYMTLEVILDPNKELAKKDPVIITTYNVTKAVKDSILVNFGECGLASSLGSFQVKYVNEITRVCIVRASREDHQKVWSAITMVRSIA-----------DCPVI---FNLLDLSGSIRACRTAAL 116
BLAST of EWM29082.1 vs. NCBI_GenBank
Match: gi|568872371|ref|XP_006489345.1| (PREDICTED: probable ribonuclease P/MRP protein subunit POP5 [Citrus sinensis] >gi|568872373|ref|XP_006489346.1| PREDICTED: probable ribonuclease P/MRP protein subunit POP5 [Citrus sinensis] >gi|985464381|ref|XP_015389073.1| PREDICTED: probable ribonuclease P/MRP protein subunit POP5 [Citrus sinensis] >gi|985464384|ref|XP_015389074.1| PREDICTED: probable ribonuclease P/MRP protein subunit POP5 [Citrus sinensis] >gi|641855928|gb|KDO74708.1| hypothetical protein CISIN_1g031717mg [Citrus sinensis]) HSP 1 Score: 73.559 bits (179), Expect = 1.576e-13 Identity = 41/120 (34.17%), Postives = 67/120 (55.83%), Query Frame = 0 Query: 6 RYLTCKLHLRPHQEGALKKKV--TAFDILRAIKESVQSNFGNFGAAPLLLSMQVRYYDEATQIFILRCPRDSFRSVWAAMTLVTSLGGSITSGNSGGRDSSAIKANISVLRVSGSVRTCR 123 RY+ ++ L P++E + V T F++ +AI++S+ NFG G A L S QV+Y + T++ I+R R+ + VW+AMT+V S+G + N VL +SGS+R C+ Sbjct: 7 RYMVVEVFLDPNKELPVDDPVILTQFNVSKAIRDSILVNFGECGLASSLGSFQVKYVNPITKLCIIRASREDCQKVWSAMTMVRSIGNCLVLFN--------------VLDLSGSIRACK 112
BLAST of EWM29082.1 vs. NCBI_GenBank
Match: gi|351727563|ref|NP_001237165.1| (uncharacterized protein LOC100527772 [Glycine max] >gi|255633176|gb|ACU16944.1| unknown [Glycine max] >gi|947067819|gb|KRH16962.1| hypothetical protein GLYMA_14G188600 [Glycine max]) HSP 1 Score: 72.4034 bits (176), Expect = 4.701e-13 Identity = 39/122 (31.97%), Postives = 68/122 (55.74%), Query Frame = 0 Query: 4 RLRYLTCKLHLRPHQE--GALKKKVTAFDILRAIKESVQSNFGNFGAAPLLLSMQVRYYDEATQIFILRCPRDSFRSVWAAMTLVTSLGGSITSGNSGGRDSSAIKANISVLRVSGSVRTCR 123 R RY+ ++ L P+++ G +T F++ +A+++S+ NFG G A L S QV+Y + T + I+R R+ ++ VWAA+T+VT++G N +L +SGS+R C+ Sbjct: 5 RNRYMVMEVFLNPNRDKVGDASVIITQFNVSKAVRDSILVNFGECGLASSLGSFQVKYVNPITNVCIIRASREEYQKVWAAITMVTNIGNCPVMFN--------------LLDLSGSIRACK 112
BLAST of EWM29082.1 vs. NCBI_GenBank
Match: gi|1137223212|gb|OMO88614.1| (Ribonuclease P/MRP protein subunit [Corchorus olitorius]) HSP 1 Score: 72.4034 bits (176), Expect = 5.172e-13 Identity = 37/120 (30.83%), Postives = 67/120 (55.83%), Query Frame = 0 Query: 6 RYLTCKLHLRPHQEGALKKKV--TAFDILRAIKESVQSNFGNFGAAPLLLSMQVRYYDEATQIFILRCPRDSFRSVWAAMTLVTSLGGSITSGNSGGRDSSAIKANISVLRVSGSVRTCR 123 RY+ ++ L P++E + + T F+I +AIKE++ NFG G A L S QV+Y + T++ ++R R+ ++ +W+A+T+V S+G N +L +SGS++ C+ Sbjct: 7 RYMVMEVFLDPNKENVVDDPIVITQFNISKAIKETILVNFGECGLASSLGSFQVKYVNPITKLCVIRASREDYQKIWSAITMVRSIGNCPVLFN--------------LLDLSGSIKACK 112
BLAST of EWM29082.1 vs. NCBI_GenBank
Match: gi|527204399|gb|EPS70583.1| (hypothetical protein M569_04177, partial [Genlisea aurea]) HSP 1 Score: 72.0182 bits (175), Expect = 5.869e-13 Identity = 38/121 (31.40%), Postives = 70/121 (57.85%), Query Frame = 0 Query: 6 RYLTCKLHLRPHQEGALKKKV--TAFDILRAIKESVQSNFGNFGAAPLLLSMQVRYYDEATQIFILRCPRDSFRSVWAAMTLVTSLGGSITSGNSGGRDSSAIKANISVLRVSGSVRTCRL 124 RYL ++ + P++E +LK+ + T ++ +AIK+S+ +NFG G + L S+QV+Y + T+I I+R R+ + VWA++T++ S+G N +L +SG +R C++ Sbjct: 7 RYLVMEVFIDPNKEFSLKEPIIITQSNLTKAIKDSILANFGECGLSSSLYSLQVKYANPITKICIIRTSREDHQKVWASVTMIRSIGNCPVVFN--------------LLHLSGCIRACKV 113 The following BLAST results are available for this feature:
BLAST of EWM29082.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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