rna1572, rna1572 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1572
Unique Name	rna1572
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2378
Alignment location	CM002457.1:963926..965535 +

Link to JBrowse

Properties


Property Name	Value
Product	putative ribonuclease p mrp protein subunit pop5
Orig transcript id	gnl\|cribi\|Naga_100024g64.4341.mrna
Orig protein id	gnl\|cribi\|Naga_100024g64.4341
Gbkey	mRNA
Note	encoded by transcript variant 2; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002457.1	supercontig	CM002457.1:963926..965535 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100024g64	gene1512	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1572	rna1572-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29083.1	cds1568	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002457.1:963926..965535+
coding sequence from alignment at CM002457.1:963926..965535+

mRNA sequence

>rna1572 ID=rna1572|Name=rna1572|organism=Nannochloropsis gaditana|type=mRNA|length=2378bp
CCGAGACGAAGAACGCGTTGGCACTTTGACGTCTTCCTACTTAATAGAGC
TGACCAACCCTACCATTCATAGACTAGGTCATGTTCTCGTTTATCACGGG
AAATGGGAGGAAAAGAGCACGCGGAAGTGCACGCAGTTTCTTCGGGAGCG
AGGTGGGGAAGACGGAGGACGGCGCAAGTTCTGGCAGCACTAGCAGCGAC
CCGAAGGCCACCGACCTCCCTCAATTCAACAAGGATAACGCACGCCAGCA
CCTCTCTGATATCGAGAAGAAACGCCAGGAGAGCATTCGTGAAAATCAGG
AGTTCCTGAAACAACTTGGACTCAAGGATGTGAAGCTCAGTCTGCGCGAC
GCCTCACCGGCAGACCCCAACCCCCCAACCGAGAGCGTGCGCTCTCTCAG
CCATCCTCACGACTCGGCCATGTCTATTGGCGCCTCTTCTTCGCCAGTGC
CGCCAACATTGGAGCAAGTGAAAGCCAAATGGGTGGGGCGTGGGGCGCAA
ATCGACGCGTTGGCCCTCCTCCTCCCGTCCCCAGGCGAGGCGAGCCCGTC
CTCCTCAGTCATCCTGGTGCATGGGCCGAGCGGGGGGGGGAAGACTGGCG
TGGTCGCCGACGTCCTCCGCGCGTTGCAACTGCCCCACGCGCACATCCGT
GGGGTGGAGCATCCGACTGCCCGGTCACTGTACAGTACGATCGCCGCGGC
ATGGTTGAGACACCTGGAAAGCCAGAGTCGGGTCTGTGGCTACCAGGACC
TCGGTTATGTGGAGGAGGACGACTGGGTCGATGAGGACGCTCAGCAGGTG
GAGAAGGCGCGCGCTGCCGAAGCGCAGGGCAGACGACGCGGGGTCACAAG
CGAGCTTTCCGTCAAAAGGGAAGGGAAGGCAGAAAGATGGGTGAGAGGGG
GATGGGAGGAAGGGGAGGGAGAGAAGGAGGACAGCGTGCGAGGCCATTTC
AGTGAAGAGGAGGGCAGCGTCGATGATAACAGTCAGGAGGAAAAAGAGGA
GGGAGAGGAGGAGGAGGAAGAGGAGGAGGAGGAAGAGGAGGAGGAAGACC
CGTATTTCGCGCAGAGGAGCTCGGTGCTGGAAGGCTCCGAGGGCAGGGGC
CTGGAGGCGGGGCTGATGCCCTTGCCCCATCGCTGTGCGACCATGGCGGG
ACTTCTGCACCTGCTGCGATCCTGGCGGGGACAGGGGTCGCGTGGGCAGC
GGGCGGGCCCCGAGGGTCCGGACAAAACGCCCTTCGTGGTGGTGTTGGAC
TCGGCGGACCGCCTCCCCGGCGGTGTGGGCTCGGTGCGTCACGAGCTTCT
GGAGCTCCCGTCGATGCTGGAAGGGCCCAAGGGCCGGCGGAGGGACTGGG
GCCAGGGTGGGACCGCCTCGCGCGTCGCTCTCTCGGTGGTGTTGGTCGCG
GAAGCGCCCGAGTCGGTGCCGGGGGCCTTGGAGGGGGGTGCCGCCCTCCA
TTTGCCCTTCCCCGCCTATACCAAGGCGCAGGCGACGGAGATCCTGCTCC
GAAGCTTGCGGGCGGCCGCAGGGGTTTCCCCTTTCCTTCCTCACGGCGGG
GGGGGGGAGGTGAGGGAGGAGGAGAAGGCAGTCGAGGCCCTTATGAAGGA
CCTCGTGACCATGCTGGTCGCCTCGCTGTACTCCTCCACGCGCGACGTAA
GGGAGATGCGGCGCATGGCTGTCTTGCTCTCTGAGAGGTACTTGGCACCC
GTTCTCAGCGAAGGCGCTTGTGGAGGGGGGGAGAACGGAACGCAGGGGGA
CGCAGGCGAGCCGGGCCGACCCCGAGGAGGAGGCGGAGGAGGGAAAGGAG
GGAGAGGCGCCTTCGGCCACCTGGACCTCTTCGAGCACGTGCGACCCCTC
CTCCACCGGGCCACGCACAGCTGTCTGCACATGCCCGCCGTGCTCGCGCC
CGGCCTTGAAGCGGGGCCCGCGCCTGTGGGATCGGTCCTGAGTCGCGATC
CCGCCGGCTGGGACGGGCACCGCCTCGAGGGGCCCCGGCCCTCCTCCTCG
CCGCCCGCTCGCCCGCCTCCTCGCGCCCTCCTCCGCTACGAGCTCCCCAA
GCTGGCGCTTTACCTCCTCCTTGCGGCCTTCCTGGCCTCCCACCTCCCCC
CCGACACAGACATGCACCTCTTCGCCCTCCCCTCCGCACGCGGGGGACGA
CGGACCCACCGAAGCGCCGCGAGCGCCACCCGGGTGGCCGAGGCGAAGGA
TGCCGAGGCGCGGAAGGAGGGCGTGCGCGCCTTCTCTCTCGAACGACTTC
TCTCCATCTTCACCTGCCTGATCGCCCTCAGTCGGACCACCGGCGCGGCC
TACGCCAATAACACGGGCACCACAGAGCTCTTCGCGCAGATCAACACGCT
GGTCAGGCACCGACTCCTCCTGCGGTCC

protein sequence of rna1572

>rna1572-protein ID=rna1572-protein|Name=rna1572|organism=Nannochloropsis gaditana|type=polypeptide|length=168bp
MRVRLRYLTCKLHLRPHQEGALKKKVTAFDILRAIKESVQSNFGNFGAAP
LLLSMQVRYYDEATQIFILRCPRDSFRSVWAAMTLVTSLGGSITSGNSGG
RDSSAIKANISVLRVSGSVRTCRLDAVSILVRAANELEGNNRRPDQESLM
AASTAFYQAQISSAIQGV

mRNA from alignment at CM002457.1:963926..965535+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1572 ID=rna1572|Name=rna1572|organism=Nannochloropsis gaditana|type=mRNA|length=1610bp|location=Sequence derived from alignment at CM002457.1:963926..965535+ (Nannochloropsis gaditana)
TATCACAGTGGCATAAATGTAGGCAAAATTATAGCAAACCTAGTTGCTGT
ATTTTGAGCGAGTCTGCGGCGAAAGGGAGGCTTGAAAGTGTGCttgtggc
ggggagggaaagattaAATGCAGCGAGCACGGCTTGCAGTGCTCAAGGCA
CATCTACCATACCCCATTCTCAAAAGAGTACAGAAAGATCACGGTTCAGT
GCGGTCGGGCGGGCGTGTCGAttgagagaagaggagacgagTAAAACGCA
TGAGGGTTCGTCTCAGATATTTAACTTGCAAGCTACATCTACGGCCTCAT
CAGGAAGGTGCTCTCAAAAAGAAAGTCACTGCGTTCGACATCCTGCGTGC
CATCAAAGTAAGTACTCCAAGAAAAGGCACGTGGCGCCGCGCCTGTCGTT
TGAGGAGATGGTCTTCTTCGACTGGCCACAAGGACATGGGCAGACGGGCT
CTGACACGAGCAACCTCCTGGCCGAGCGACCTGCCGCACCGCAATAATGC
GCGCAGCTTCATCGCTGTGTCACACTATTGAGTCTTCTATCTCATCTTTG
TGGGCataggaaaggcggggatcGTTGAGGCATCTCAGGAGGCTTAATGG
AGTTTGCGATTTTCCCCCCAACAAATCTGTTCATTCTCCCCCACCGTTTT
ATACTCATTCACACAAACCAAGTAGGAATCAGTCCAAAGCAATTTTGGGA
ATTTCGGGgccgctcctctccttctctctatGCAAGTTCGATACTACGAT
GAGGCCACCCAAATTTTTATCCTGAGGTGTCCCCGAGACAGTTTCCGATC
CGTGTGGGCGGCGATGACACTTGTCACAAGCTTAGGAGGCAGCATTACCA
GCGGCAATAGCGGTGGCAGAGATTCTAGTGCGATCAAGGCAAACATCAGT
GTCCTTCGTGTGTCAGGATCAGTGCGTACTTGTCGGCTCGACGCAGTCTC
CATCCTTGTGCGGGCAGCGAATGAGTTGGAGGGTAATAATCGGCGTCCAG
ACCAGGAAAGCTTGATGGCGGCATCGACAGCCTTCTACCAGGCACAGATC
AGCAGTGCCATTCAAGGCGTGTAGCAAGGGGACAGGATAAGTCGTGTACG
TACGTGGCATGTGTCGAGAGAGGCAAAGGCGCACATAGTAAAAGCGGGTG
TGGCGCTCAGGAAAATTCCCGTGCCCACGCGTACATTAATGATGCAACAT
TACACATCATCGCTTAAACAACTGCGGGCTCATGTCCATGACTTGCCGTT
GTGCCGCGGTGAGACATTACCCTGTCAACGCTTTCCTTGCGAGGACCTGA
GGAATCGATTCTTTGAGAAAAAGCATGCGACGCATAATTTCCTCTTCTAC
CTTATATTTTCATAcaggagatgaagaagaattTGTAGGCCATCGCCGCT
CTTCTTCACCCTTCACAAAATTTATTGCGCGGACCGCCCTTCCAATGTAC
AAAGCATTCATTGTAAATATCAGGCTAGGGAATAAAAAGAACCAAAACTC
GTTTTCCCCGAATCCTTTCCTTTACATTTTTGCCATCGGGTACTGTTCCT
TCAATATCACCAACCAGATCCCCGCTGtttcgcctgctcctcctcctgcc
agccctcccc

Coding sequence (CDS) from alignment at CM002457.1:963926..965535+

>rna1572 ID=rna1572|Name=rna1572|organism=Nannochloropsis gaditana|type=CDS|length=1014bp|location=Sequence derived from alignment at CM002457.1:963926..965535+ (Nannochloropsis gaditana)
ATGAGGGTTCGTCTCAGATATTTAACTTGCAAGCTACATCTACGGCCTCA
TCAGGAAGGTGCTCTCAAAAAGAAAGTCACTGCGTTCGACATCCTGCGTG
CCATCAAAGAATCAGTCCAAAGCAATTTTGGGAATTTCGGGgccgctcct
ctccttctctctatGCAAGTTCGATACTACGATGAGGCCACCCAAATTTT
TATCCTGAGGTGTCCCCGAGACAGTTTCCGATCCGTGTGGGCGGCGATGA
CACTTGTCACAAGCTTAGGAGGCAGCATTACCAGCGGCAATAGCGGTGGC
AGAGATTCTAGTGCGATCAAGGCAAACATCAGTGTCCTTCGTGTGTCAGG
ATCAGTGCGTACTTGTCGGCTCGACGCAGTCTCCATCCTTGTGCGGGCAG
CGAATGAGTTGGAGGGTAATAATCGGCGTCCAGACCAGGAAAGCTTGATG
GCGGCATCGACAGCCTTCTACCAGGCACAGATCAGCAGTGCCATTCAAGG
CGTGTAGATGAGGGTTCGTCTCAGATATTTAACTTGCAAGCTACATCTAC
GGCCTCATCAGGAAGGTGCTCTCAAAAAGAAAGTCACTGCGTTCGACATC
CTGCGTGCCATCAAAGAATCAGTCCAAAGCAATTTTGGGAATTTCGGGgc
cgctcctctccttctctctatGCAAGTTCGATACTACGATGAGGCCACCC
AAATTTTTATCCTGAGGTGTCCCCGAGACAGTTTCCGATCCGTGTGGGCG
GCGATGACACTTGTCACAAGCTTAGGAGGCAGCATTACCAGCGGCAATAG
CGGTGGCAGAGATTCTAGTGCGATCAAGGCAAACATCAGTGTCCTTCGTG
TGTCAGGATCAGTGCGTACTTGTCGGCTCGACGCAGTCTCCATCCTTGTG
CGGGCAGCGAATGAGTTGGAGGGTAATAATCGGCGTCCAGACCAGGAAAG
CTTGATGGCGGCATCGACAGCCTTCTACCAGGCACAGATCAGCAGTGCCA
TTCAAGGCGTGTAG

Synonyms

Publications