EWM29083.1, cds1568 (CDS) Nannochloropsis gaditana

Overview
NameEWM29083.1
Unique Namecds1568
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:964175..964282 +
Alignment locationCM002457.1:964601..964999 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29083.1
Productputative ribonuclease p mrp protein subunit pop5
Orig transcript idgnl|cribi|Naga_100024g64.4341.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:964175..964282 +
CM002457.1supercontigCM002457.1:964601..964999 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0004518nuclease activity
GO:0004526ribonuclease P activity
GO:0004540ribonuclease activity
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Biological Process
TermDefinition
GO:0016070RNA metabolic process
GO:0008033tRNA processing
Vocabulary: INTERPRO
TermDefinition
IPR016819RNase_P/MRP_POP5
IPR002759RNase_P/MRP_subunit
Homology
BLAST of EWM29083.1 vs. NCBI_GenBank
Match: gi|585111601|gb|EWM29082.1| (putative ribonuclease p mrp protein subunit pop5 [Nannochloropsis gaditana] >gi|585111602|gb|EWM29083.1| putative ribonuclease p mrp protein subunit pop5 [Nannochloropsis gaditana])

HSP 1 Score: 345.125 bits (884), Expect = 2.828e-120
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0
Query:    1 MRVRLRYLTCKLHLRPHQEGALKKKVTAFDILRAIKESVQSNFGNFGAAPLLLSMQVRYYDEATQIFILRCPRDSFRSVWAAMTLVTSLGGSITSGNSGGRDSSAIKANISVLRVSGSVRTCRLDAVSILVRAANELEGNNRRPDQESLMAASTAFYQAQISSAIQGV 168
            MRVRLRYLTCKLHLRPHQEGALKKKVTAFDILRAIKESVQSNFGNFGAAPLLLSMQVRYYDEATQIFILRCPRDSFRSVWAAMTLVTSLGGSITSGNSGGRDSSAIKANISVLRVSGSVRTCRLDAVSILVRAANELEGNNRRPDQESLMAASTAFYQAQISSAIQGV
Sbjct:    1 MRVRLRYLTCKLHLRPHQEGALKKKVTAFDILRAIKESVQSNFGNFGAAPLLLSMQVRYYDEATQIFILRCPRDSFRSVWAAMTLVTSLGGSITSGNSGGRDSSAIKANISVLRVSGSVRTCRLDAVSILVRAANELEGNNRRPDQESLMAASTAFYQAQISSAIQGV 168          
BLAST of EWM29083.1 vs. NCBI_GenBank
Match: gi|567853425|ref|XP_006419876.1| (hypothetical protein CICLE_v10006132mg [Citrus clementina] >gi|557521749|gb|ESR33116.1| hypothetical protein CICLE_v10006132mg [Citrus clementina])

HSP 1 Score: 76.6406 bits (187), Expect = 1.177e-14
Identity = 42/120 (35.00%), Postives = 68/120 (56.67%), Query Frame = 0
Query:    6 RYLTCKLHLRPHQEGALKKKV--TAFDILRAIKESVQSNFGNFGAAPLLLSMQVRYYDEATQIFILRCPRDSFRSVWAAMTLVTSLGGSITSGNSGGRDSSAIKANISVLRVSGSVRTCR 123
            RY+  ++ L P++E  +   V  T F++ +AI++S+  NFG  G A LL S QV+Y +  T++ I+R  R+  + VW+AMT+V S+G  +   N              VL +SGS+R C+
Sbjct:    7 RYMVVEVFLDPNKELPVDDPVILTQFNVSKAIRDSILVNFGECGLASLLGSFQVKYVNPITKLCIIRASREDCQKVWSAMTMVRSIGNCLVLFN--------------VLDLSGSIRACK 112          
BLAST of EWM29083.1 vs. NCBI_GenBank
Match: gi|848853457|ref|XP_012843722.1| (PREDICTED: probable ribonuclease P/MRP protein subunit POP5 [Erythranthe guttata] >gi|604347039|gb|EYU45343.1| hypothetical protein MIMGU_mgv1a015535mg [Erythranthe guttata])

HSP 1 Score: 76.2554 bits (186), Expect = 1.366e-14
Identity = 41/124 (33.06%), Postives = 69/124 (55.65%), Query Frame = 0
Query:    6 RYLTCKLHLRPHQEGALKKKV--TAFDILRAIKESVQSNFGNFGAAPLLLSMQVRYYDEATQIFILRCPRDSFRSVWAAMTLVTSLGGSITSGNSGGRDSSAIKANISVLRVSGSVRTCRLDAV 127
            RY+  ++ L P+++ +L   +  T  ++  AIKES+ +NFG  G A  + S QV+Y +  T+I I R  R+ ++ VWAA+T+V S+G      N              +L +SGS+R C++ A+
Sbjct:    7 RYMVMEVFLDPNKDNSLHDPIIITQLNLSNAIKESILTNFGECGLASSMHSFQVKYVNPITKICIFRTSREEYQKVWAAITMVKSIGNCPVVFN--------------LLDLSGSIRACKIAAL 116          
BLAST of EWM29083.1 vs. NCBI_GenBank
Match: gi|1009127821|ref|XP_015880898.1| (PREDICTED: probable ribonuclease P/MRP protein subunit POP5 [Ziziphus jujuba] >gi|1009172059|ref|XP_015867066.1| PREDICTED: probable ribonuclease P/MRP protein subunit POP5 [Ziziphus jujuba] >gi|1009172061|ref|XP_015867067.1| PREDICTED: probable ribonuclease P/MRP protein subunit POP5 [Ziziphus jujuba] >gi|1009172063|ref|XP_015867068.1| PREDICTED: probable ribonuclease P/MRP protein subunit POP5 [Ziziphus jujuba])

HSP 1 Score: 76.2554 bits (186), Expect = 1.726e-14
Identity = 41/124 (33.06%), Postives = 72/124 (58.06%), Query Frame = 0
Query:    6 RYLTCKLHLRPHQEGALKKKV--TAFDILRAIKESVQSNFGNFGAAPLLLSMQVRYYDEATQIFILRCPRDSFRSVWAAMTLVTSLGGSITSGNSGGRDSSAIKANISVLRVSGSVRTCRLDAV 127
            RYL  +++L P++E      +  T++++ +AIK+S+  NFG  G A  L S QV+Y +  T++ I+R  R+ ++ VW+A+T+V S+G S  +              I +L +SGS++ CR  A+
Sbjct:    7 RYLVVEVNLNPNRETVTNDPIILTSYNVTKAIKDSILLNFGECGLASSLGSFQVKYVNYITKLCIIRASREEYQKVWSAITMVRSIGNSPVA--------------IYLLDLSGSIKACRTAAL 116          
BLAST of EWM29083.1 vs. NCBI_GenBank
Match: gi|575473974|ref|XP_006676280.1| (hypothetical protein BATDEDRAFT_85526 [Batrachochytrium dendrobatidis JAM81] >gi|328773898|gb|EGF83935.1| hypothetical protein BATDEDRAFT_85526 [Batrachochytrium dendrobatidis JAM81] >gi|1028567934|gb|OAJ36238.1| hypothetical protein BDEG_20434 [Batrachochytrium dendrobatidis JEL423])

HSP 1 Score: 73.9442 bits (180), Expect = 6.191e-14
Identity = 41/120 (34.17%), Postives = 67/120 (55.83%), Query Frame = 0
Query:    1 MRVRLRYLTCKLHLRPHQEGALKKKVTAFDILRAIKESVQSNFGNFGAAPLLLSMQVRYYDEATQIFILRCPRDSFRSVWAAMTLVTSLGGSI-------TSGNSGGRDSSAIKANISVL 113
            +R + RYL C++     + G + + +  + IL AIKES+ +NFG FG   L +S+QV+Y++  T + I+R  RD  R VWA ++L+T++   I         G      S AIK N +++
Sbjct:    2 VRFKNRYLLCEI---IFENGKISESLNLYQILNAIKESLSTNFGVFGLGVLAISLQVKYFNPFTGLAIVRVNRDYMRLVWACVSLITAINKRICMVKVVHVGGTIKLVQSQAIKYNQTII 118          
BLAST of EWM29083.1 vs. NCBI_GenBank
Match: gi|470144570|ref|XP_004307927.1| (PREDICTED: probable ribonuclease P/MRP protein subunit POP5 [Fragaria vesca subsp. vesca] >gi|764635847|ref|XP_011470163.1| PREDICTED: probable ribonuclease P/MRP protein subunit POP5 [Fragaria vesca subsp. vesca])

HSP 1 Score: 74.7146 bits (182), Expect = 7.179e-14
Identity = 44/124 (35.48%), Postives = 72/124 (58.06%), Query Frame = 0
Query:    6 RYLTCKLHLRPHQEGALKKKV--TAFDILRAIKESVQSNFGNFGAAPLLLSMQVRYYDEATQIFILRCPRDSFRSVWAAMTLVTSLGGSITSGNSGGRDSSAIKANISVLRVSGSVRTCRLDAV 127
            RY+T ++ L P++E A K  V  T +++ +A+K+S+  NFG  G A  L S QV+Y +E T++ I+R  R+  + VW+A+T+V S+            D   I    ++L +SGS+R CR  A+
Sbjct:    7 RYMTLEVILDPNKELAKKDPVIITTYNVTKAVKDSILVNFGECGLASSLGSFQVKYVNEITRVCIVRASREDHQKVWSAITMVRSIA-----------DCPVI---FNLLDLSGSIRACRTAAL 116          
BLAST of EWM29083.1 vs. NCBI_GenBank
Match: gi|568872371|ref|XP_006489345.1| (PREDICTED: probable ribonuclease P/MRP protein subunit POP5 [Citrus sinensis] >gi|568872373|ref|XP_006489346.1| PREDICTED: probable ribonuclease P/MRP protein subunit POP5 [Citrus sinensis] >gi|985464381|ref|XP_015389073.1| PREDICTED: probable ribonuclease P/MRP protein subunit POP5 [Citrus sinensis] >gi|985464384|ref|XP_015389074.1| PREDICTED: probable ribonuclease P/MRP protein subunit POP5 [Citrus sinensis] >gi|641855928|gb|KDO74708.1| hypothetical protein CISIN_1g031717mg [Citrus sinensis])

HSP 1 Score: 73.559 bits (179), Expect = 1.576e-13
Identity = 41/120 (34.17%), Postives = 67/120 (55.83%), Query Frame = 0
Query:    6 RYLTCKLHLRPHQEGALKKKV--TAFDILRAIKESVQSNFGNFGAAPLLLSMQVRYYDEATQIFILRCPRDSFRSVWAAMTLVTSLGGSITSGNSGGRDSSAIKANISVLRVSGSVRTCR 123
            RY+  ++ L P++E  +   V  T F++ +AI++S+  NFG  G A  L S QV+Y +  T++ I+R  R+  + VW+AMT+V S+G  +   N              VL +SGS+R C+
Sbjct:    7 RYMVVEVFLDPNKELPVDDPVILTQFNVSKAIRDSILVNFGECGLASSLGSFQVKYVNPITKLCIIRASREDCQKVWSAMTMVRSIGNCLVLFN--------------VLDLSGSIRACK 112          
BLAST of EWM29083.1 vs. NCBI_GenBank
Match: gi|351727563|ref|NP_001237165.1| (uncharacterized protein LOC100527772 [Glycine max] >gi|255633176|gb|ACU16944.1| unknown [Glycine max] >gi|947067819|gb|KRH16962.1| hypothetical protein GLYMA_14G188600 [Glycine max])

HSP 1 Score: 72.4034 bits (176), Expect = 4.701e-13
Identity = 39/122 (31.97%), Postives = 68/122 (55.74%), Query Frame = 0
Query:    4 RLRYLTCKLHLRPHQE--GALKKKVTAFDILRAIKESVQSNFGNFGAAPLLLSMQVRYYDEATQIFILRCPRDSFRSVWAAMTLVTSLGGSITSGNSGGRDSSAIKANISVLRVSGSVRTCR 123
            R RY+  ++ L P+++  G     +T F++ +A+++S+  NFG  G A  L S QV+Y +  T + I+R  R+ ++ VWAA+T+VT++G      N              +L +SGS+R C+
Sbjct:    5 RNRYMVMEVFLNPNRDKVGDASVIITQFNVSKAVRDSILVNFGECGLASSLGSFQVKYVNPITNVCIIRASREEYQKVWAAITMVTNIGNCPVMFN--------------LLDLSGSIRACK 112          
BLAST of EWM29083.1 vs. NCBI_GenBank
Match: gi|1137223212|gb|OMO88614.1| (Ribonuclease P/MRP protein subunit [Corchorus olitorius])

HSP 1 Score: 72.4034 bits (176), Expect = 5.172e-13
Identity = 37/120 (30.83%), Postives = 67/120 (55.83%), Query Frame = 0
Query:    6 RYLTCKLHLRPHQEGALKKKV--TAFDILRAIKESVQSNFGNFGAAPLLLSMQVRYYDEATQIFILRCPRDSFRSVWAAMTLVTSLGGSITSGNSGGRDSSAIKANISVLRVSGSVRTCR 123
            RY+  ++ L P++E  +   +  T F+I +AIKE++  NFG  G A  L S QV+Y +  T++ ++R  R+ ++ +W+A+T+V S+G      N              +L +SGS++ C+
Sbjct:    7 RYMVMEVFLDPNKENVVDDPIVITQFNISKAIKETILVNFGECGLASSLGSFQVKYVNPITKLCVIRASREDYQKIWSAITMVRSIGNCPVLFN--------------LLDLSGSIKACK 112          
BLAST of EWM29083.1 vs. NCBI_GenBank
Match: gi|527204399|gb|EPS70583.1| (hypothetical protein M569_04177, partial [Genlisea aurea])

HSP 1 Score: 72.0182 bits (175), Expect = 5.869e-13
Identity = 38/121 (31.40%), Postives = 70/121 (57.85%), Query Frame = 0
Query:    6 RYLTCKLHLRPHQEGALKKKV--TAFDILRAIKESVQSNFGNFGAAPLLLSMQVRYYDEATQIFILRCPRDSFRSVWAAMTLVTSLGGSITSGNSGGRDSSAIKANISVLRVSGSVRTCRL 124
            RYL  ++ + P++E +LK+ +  T  ++ +AIK+S+ +NFG  G +  L S+QV+Y +  T+I I+R  R+  + VWA++T++ S+G      N              +L +SG +R C++
Sbjct:    7 RYLVMEVFIDPNKEFSLKEPIIITQSNLTKAIKDSILANFGECGLSSSLYSLQVKYANPITKICIIRTSREDHQKVWASVTMIRSIGNCPVVFN--------------LLHLSGCIRACKV 113          
The following BLAST results are available for this feature:
BLAST of EWM29083.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111601|gb|EWM29082.1|2.828e-120100.00putative ribonuclease p mrp protein subunit pop5 [... [more]
gi|567853425|ref|XP_006419876.1|1.177e-1435.00hypothetical protein CICLE_v10006132mg [Citrus cle... [more]
gi|848853457|ref|XP_012843722.1|1.366e-1433.06PREDICTED: probable ribonuclease P/MRP protein sub... [more]
gi|1009127821|ref|XP_015880898.1|1.726e-1433.06PREDICTED: probable ribonuclease P/MRP protein sub... [more]
gi|575473974|ref|XP_006676280.1|6.191e-1434.17hypothetical protein BATDEDRAFT_85526 [Batrachochy... [more]
gi|470144570|ref|XP_004307927.1|7.179e-1435.48PREDICTED: probable ribonuclease P/MRP protein sub... [more]
gi|568872371|ref|XP_006489345.1|1.576e-1334.17PREDICTED: probable ribonuclease P/MRP protein sub... [more]
gi|351727563|ref|NP_001237165.1|4.701e-1331.97uncharacterized protein LOC100527772 [Glycine max]... [more]
gi|1137223212|gb|OMO88614.1|5.172e-1330.83Ribonuclease P/MRP protein subunit [Corchorus olit... [more]
gi|527204399|gb|EPS70583.1|5.869e-1331.40hypothetical protein M569_04177, partial [Genlisea... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1572rna1572Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications