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Properties
| Property Name | Value |
|---|
| Product | AAA ATPase domain protein |
| Orig transcript id | gnl|cribi|Naga_100007g1.6433.mrna |
| Orig protein id | gnl|cribi|Naga_100007g1.6433 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002457.1 | supercontig | CM002457.1:960080..962457 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna1571 ID=rna1571|Name=rna1571|organism=Nannochloropsis gaditana|type=mRNA|length=1642bp
ACGCTCATTCCATCCTTTGTTCCATTGACCTCAGGCCTTGATTGCCTCAG
TAAGGTCTGACTTTCTTGAGGTAATCAACGTATCCGCGCAGGCCCAGCAA
CCAACCTCCTCCCTCCCTTGGGCTACCCCCTTGGCGTTTACCAACTCCAT
TTCCGCCTCACGCATGGTTACAAACGGCAAAAAAAAGGATGGGAAGGAAA
AAAACACACATCCTGACGTCGATCTGGATTCTGACCCAGCCAAAGGGGTT
GAGGATGACGTGCAGACCTTCGAGGCGCTGGGTGTGGTCAAGCCTCTCTG
TGAGGCCTGCGCAGCGATCGGATGGACGAAACCCACGGGAATCCAGCAAC
AAGCTATCCCAGCGGCTCTACAGGGCCGTGATGTGATCGGGCTGGCTGAG
ACAGGTTCAGGCAAGACTGGTGCGTTTGCTTTGCCGGTGCTGCAAGCCTT
GTTGGCAAAGCCTCAACGCCTTTTTGCGGTTGTGCTCGCCCCGACACGTG
AGCTGGCGTTCCAGATACACGAAGTCTTCGAGGCCTTGGGTGCAAGCATT
GGCCTCAAATCCTGCTGTGTGGTAGGAGGTGTGGACATGATGACGCAGGC
GATCGCATTGGCACGCAAACCGCACGTGGTGGTGGCCACCCCGGGGCGTC
TGGTCGACCATTTGGAGAACACAAAGGGTTTCCACATCCGCGAGGCCCGC
TTCCTGGTACTGGACGAGGCCGATCGCATGCTCTCCATGGATTTCGAGGA
GGAGATCAACAAGATTTTGGCCATCATGCCCACGGGGAAGCACCGCCGGA
CCCTCCTTTTCAGCGCGACCATGACCTCGAAAGTAGCCAAGCTCCAGCGT
GCCTCCCTCACCGACCCGGTCAAGGTGGAGGCATCCGACAAGTTCACGAC
GCCCCGTACCCTCGTGCAGCAGTATCTCTTCATCCCCGCCAAGTACAAGG
ACTGCTACCTGGCCTACGCGCTCAACGAGGCCGCCGGCCAGACCATCCTC
GTCTTCGTCGCCACATGCAACAACGCTCAGCGCCTCGCCCTCCTGCTCCG
CAACCTGGGCTTCGGTGCCATTTGTCTCCACGGGCAGATGACCCAACCCA
AGCGCCTGGGGGCCCTCCACAAATTCAAGTCGGGCCAGCGCTCCATCCTC
ATCGCCACGGACGTAGCCTCCCGGGGCCTAGACATCCCCGCGGTGGACTT
GGTCATCAATTTCGACATCCCCTCCCACGGGAAGGACTACATCCACCGGG
TGGGCCGCACTGCGCGCGCAGGCCGGGCGGGAAGATCCATCGCCATGGTC
ACGCAGTATGACGTGGAGGTGTATCAGCGGCTCGAAGCCTTGCTGGGAAC
CAAGCTCCCTGAGTACAAAACCGACGAGGAGACGGTCTTGATCCTGCTGG
AGAGGGTCAGTGAGGCACAACGGATTGCGGCGAGGGAATTGCGGGAGCTG
ACTTTGGGAGGGGGGAAGAAGGGGGGGAGGAAGCGGGGGAGAGATGGGGA
GGGCGACGAGGACGAGGGAGGGGAAGGCGGGAGGGAGGCAGGGGGCAAAC
CCTTGAAGGCCGGCCAGGGCGCGTTGAAGAGGGGGGGGGGTCGTGGGAGG
ACGGGAGGGAGAGGACAAGGGCGACGCCCGGGGCGCTTCTGA back to topprotein sequence of rna1571 >rna1571-protein ID=rna1571-protein|Name=rna1571|organism=Nannochloropsis gaditana|type=polypeptide|length=766bp
MFSFITGNGRKRARGSARSFFGSEVGKTEDGASSGSTSSDPKATDLPQFN
KDNARQHLSDIEKKRQESIRENQEFLKQLGLKDVKLSLRDASPADPNPPT
ESVRSLSHPHDSAMSIGASSSPVPPTLEQVKAKWVGRGAQIDALALLLPS
PGEASPSSSVILVHGPSGGGKTGVVADVLRALQLPHAHIRGVEHPTARSL
YSTIAAAWLRHLESQSRVCGYQDLGYVEEDDWVDEDAQQVEKARAAEAQG
RRRGVTSELSVKREGKAERWVRGGWEEGEGEKEDSVRGHFSEEEGSVDDN
SQEEKEEGEEEEEEEEEEEEEEDPYFAQRSSVLEGSEGRGLEAGLMPLPH
RCATMAGLLHLLRSWRGQGSRGQRAGPEGPDKTPFVVVLDSADRLPGGVG
SVRHELLELPSMLEGPKGRRRDWGQGGTASRVALSVVLVAEAPESVPGAL
EGGAALHLPFPAYTKAQATEILLRSLRAAAGVSPFLPHGGGGEVREEEKA
VEALMKDLVTMLVASLYSSTRDVREMRRMAVLLSERYLAPVLSEGACGGG
ENGTQGDAGEPGRPRGGGGGGKGGRGAFGHLDLFEHVRPLLHRATHSCLH
MPAVLAPGLEAGPAPVGSVLSRDPAGWDGHRLEGPRPSSSPPARPPPRAL
LRYELPKLALYLLLAAFLASHLPPDTDMHLFALPSARGGRRTHRSAASAT
RVAEAKDAEARKEGVRAFSLERLLSIFTCLIALSRTTGAAYANNTGTTEL
FAQINTLVRHRLLLRS back to topmRNA from alignment at CM002457.1:960080..962457+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna1571 ID=rna1571|Name=rna1571|organism=Nannochloropsis gaditana|type=mRNA|length=2378bp|location=Sequence derived from alignment at CM002457.1:960080..962457+ (Nannochloropsis gaditana)
CCGAGACGAAGAACGCGTTGGCACTTTGACGTCTTCCTACTTAATAGAGC
TGACCAACCCTACCATTCATAGACTAGGTCATGTTCTCGTTTATCACGgg
aaatgggaggaaaagagcacGCGGAAGTGCACGCAGTTTCTTCGGGAGcg
aggtggggaagacggaggacggcgcAAGTTCTGGCAGCACTAGCAGCGAC
CCGAAGGCCACCGACCTCCCTCAATTCAACAAGGATAACGCACGCCAGCA
CCTCTCTGATATCGAGAAGAAACGCCAGGAGAGCATTCGTGAAAATCAGG
AGTTCCTGAAACAACTTGGACTCAAGGATGTGAAGCTCAGTCTGCGCGAC
GCCTCACCGGCAGACCCCAACCCCCCAACCGAGAGCGTGCGCTCTCTCAG
CCATCCTCACGACTCGGCCATGTCTATTGgcgcctcttcttcgccagTGC
CGCCAACATTGGAGCAAGTGAAAGCCAAATGGGTGGGGCGTGGGGCGCAA
ATCGACGCgttggccctcctcctcccgtccccagGCGAGgcgagcccgtc
ctcctcagtCATCCTGGTGCATGGGccgagcgggggggggaagactgGCG
TGGTCGCCGACGTCCTCCGCGCGTTGCAACTGCCCCACGCGCACATCCGT
GGGGTGGAGCATCCGACTGCCCGGTCACTGTACAGTACGATCGCCGCGGC
ATGGTTGAGACACCTGGAAAGCCAGAGTCGGGTCTGTGGCTACCAGGACC
TCGGttatgtggaggaggacgactggGTCGATGAGGACGCTCagcaggtg
gagaaggcgcgCGCTGCCGAAGCGCAGGGCAGACGACGCGGGGTCACAAG
CGAGCTTTCCGtcaaaagggaagggaaggcagaAAGATGGGtgagagggg
gatgggaggaaggggagggagagaaggaggacagcgtGCGAGGCCATTTc
agtgaagaggagggcagcgTCGATGATAACAgtcaggaggaaaaagagga
gggagaggaggaggaggaagaggaggaggaggaagaggaggaggaagacc
cgtATTTCGCGCAGAGGAGCTCGGTGCTGGAAGGCTCCGAGGGCaggggc
ctggaggcggggCTGATGCCCTTGCCCCATCGCTGTGCGACCATGGCGGG
ACTTCTGCACCTGCTGCGATCCTGGCGGGGACAGGGGTCGCGTGGGCAGC
GGGCGGGCCCCGAGGGTCCGGACAAAACGCCCTTCGTGGTGGTGTTGGAC
TCGGCGGACCGCCTCCCCGGCGGTGTGGGCTCGGTGCGTCACGAGCTTCT
GGAGCTCCCGTCGATGCTGGAAGGGCCCAagggccggcggagggactgGG
GCCAGGGTGGGACCGCCTCGCGCGTCGCTCTCTCGGTGGTGTTGGTCGCG
GAAGCGCCCGAGTCGGTGCcgggggccttggaggggggTGCCGCCCTCCA
TttgcccttccccgcctaTACCAAGGCGCAGGCGACGGAGATCCTGCTCC
GAAGCTTGCGGGCGGCCGCAGGggtttcccctttccttcctcacggcggg
gggggggaggtgagggaggaggagaaggcagtcGAGGCCCTTATGAAGGA
CCTCGTGACCATGCTGGTCGCCTCGCTGtactcctccacgcgcgacGTAA
GGGAGATGCGGCGCATGGCTGTCTTGCTCTCTGAGAGGTACTTGGCACCC
GTTCTCAGCGAAGGCGcttgtggagggggggagaacggAACGCAGGGGGA
CGCAGGCGAGCCGGGCCGaccccgaggaggaggcggaggagggaaaggag
ggagaggcgccTTCGGCCACCTGGACCTCTTCGAGCACGTGcgacccctc
ctccaccgggcCACGCACAGCTGTCTGCACATGCCCGCCGTGCTCGCGCC
CGGCCTTGAAGCGGGGCCCGCGCCTGTGGGATCGGTCCTGAGTCGCGATC
CCGCCGGCTGGGACGGGCACCGCCTCGAGGggccccggccctcctcctcg
ccgcccgctcgcccgcctcctcgcgccctcctccgctacGAGCTCCCCAA
GCTGGcgctttacctcctccttgcggccttcctggcctcccacctccccc
ccgacacAGACATGcacctcttcgccctcccctccgcacGCGGGGGACGA
CGGACCCACCGAAGCGCCGCGAGCGCCACCCGGGTGGCCGAGGCGAAGGA
TGCCGaggcgcggaaggagggcgtgcgcgCCTTCTCTCTCGAACGACTTC
TCTCCATCTTCACCTGCCTGATCGCCCTCAGTCGGACCACCGGCGCGGCC
TACGCCAATAACACGGGCACCACAGAGCTCTTCGCGCAGATCAACACGCT
GGTCAGGCACCGACTCCTCCTGCGGTCC back to topCoding sequence (CDS) from alignment at CM002457.1:960080..962457+ >rna1571 ID=rna1571|Name=rna1571|organism=Nannochloropsis gaditana|type=CDS|length=2298bp|location=Sequence derived from alignment at CM002457.1:960080..962457+ (Nannochloropsis gaditana)
ATGTTCTCGTTTATCACGggaaatgggaggaaaagagcacGCGGAAGTGC
ACGCAGTTTCTTCGGGAGcgaggtggggaagacggaggacggcgcAAGTT
CTGGCAGCACTAGCAGCGACCCGAAGGCCACCGACCTCCCTCAATTCAAC
AAGGATAACGCACGCCAGCACCTCTCTGATATCGAGAAGAAACGCCAGGA
GAGCATTCGTGAAAATCAGGAGTTCCTGAAACAACTTGGACTCAAGGATG
TGAAGCTCAGTCTGCGCGACGCCTCACCGGCAGACCCCAACCCCCCAACC
GAGAGCGTGCGCTCTCTCAGCCATCCTCACGACTCGGCCATGTCTATTGg
cgcctcttcttcgccagTGCCGCCAACATTGGAGCAAGTGAAAGCCAAAT
GGGTGGGGCGTGGGGCGCAAATCGACGCgttggccctcctcctcccgtcc
ccagGCGAGgcgagcccgtcctcctcagtCATCCTGGTGCATGGGccgag
cgggggggggaagactgGCGTGGTCGCCGACGTCCTCCGCGCGTTGCAAC
TGCCCCACGCGCACATCCGTGGGGTGGAGCATCCGACTGCCCGGTCACTG
TACAGTACGATCGCCGCGGCATGGTTGAGACACCTGGAAAGCCAGAGTCG
GGTCTGTGGCTACCAGGACCTCGGttatgtggaggaggacgactggGTCG
ATGAGGACGCTCagcaggtggagaaggcgcgCGCTGCCGAAGCGCAGGGC
AGACGACGCGGGGTCACAAGCGAGCTTTCCGtcaaaagggaagggaaggc
agaAAGATGGGtgagagggggatgggaggaaggggagggagagaaggagg
acagcgtGCGAGGCCATTTcagtgaagaggagggcagcgTCGATGATAAC
Agtcaggaggaaaaagaggagggagaggaggaggaggaagaggaggagga
ggaagaggaggaggaagacccgtATTTCGCGCAGAGGAGCTCGGTGCTGG
AAGGCTCCGAGGGCaggggcctggaggcggggCTGATGCCCTTGCCCCAT
CGCTGTGCGACCATGGCGGGACTTCTGCACCTGCTGCGATCCTGGCGGGG
ACAGGGGTCGCGTGGGCAGCGGGCGGGCCCCGAGGGTCCGGACAAAACGC
CCTTCGTGGTGGTGTTGGACTCGGCGGACCGCCTCCCCGGCGGTGTGGGC
TCGGTGCGTCACGAGCTTCTGGAGCTCCCGTCGATGCTGGAAGGGCCCAa
gggccggcggagggactgGGGCCAGGGTGGGACCGCCTCGCGCGTCGCTC
TCTCGGTGGTGTTGGTCGCGGAAGCGCCCGAGTCGGTGCcgggggccttg
gaggggggTGCCGCCCTCCATttgcccttccccgcctaTACCAAGGCGCA
GGCGACGGAGATCCTGCTCCGAAGCTTGCGGGCGGCCGCAGGggtttccc
ctttccttcctcacggcggggggggggaggtgagggaggaggagaaggca
gtcGAGGCCCTTATGAAGGACCTCGTGACCATGCTGGTCGCCTCGCTGta
ctcctccacgcgcgacGTAAGGGAGATGCGGCGCATGGCTGTCTTGCTCT
CTGAGAGGTACTTGGCACCCGTTCTCAGCGAAGGCGcttgtggagggggg
gagaacggAACGCAGGGGGACGCAGGCGAGCCGGGCCGaccccgaggagg
aggcggaggagggaaaggagggagaggcgccTTCGGCCACCTGGACCTCT
TCGAGCACGTGcgacccctcctccaccgggcCACGCACAGCTGTCTGCAC
ATGCCCGCCGTGCTCGCGCCCGGCCTTGAAGCGGGGCCCGCGCCTGTGGG
ATCGGTCCTGAGTCGCGATCCCGCCGGCTGGGACGGGCACCGCCTCGAGG
ggccccggccctcctcctcgccgcccgctcgcccgcctcctcgcgccctc
ctccgctacGAGCTCCCCAAGCTGGcgctttacctcctccttgcggcctt
cctggcctcccacctcccccccgacacAGACATGcacctcttcgccctcc
cctccgcacGCGGGGGACGACGGACCCACCGAAGCGCCGCGAGCGCCACC
CGGGTGGCCGAGGCGAAGGATGCCGaggcgcggaaggagggcgtgcgcgC
CTTCTCTCTCGAACGACTTCTCTCCATCTTCACCTGCCTGATCGCCCTCA
GTCGGACCACCGGCGCGGCCTACGCCAATAACACGGGCACCACAGAGCTC
TTCGCGCAGATCAACACGCTGGTCAGGCACCGACTCCTCCTGCGGTCC back to top
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