rna1570, rna1570 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1570
Unique Name	rna1570
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3188
Alignment location	CM002457.1:958348..959989 -

Link to JBrowse

Properties


Property Name	Value
Product	dead deah box rna
Orig transcript id	gnl\|cribi\|Naga_100007g2.6539.mrna
Orig protein id	gnl\|cribi\|Naga_100007g2.6539
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002457.1	supercontig	CM002457.1:958348..959989 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100007g2	gene1510	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29212.1	cds1566	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1570	rna1570-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002457.1:958348..959989-
coding sequence from alignment at CM002457.1:958348..959989-

mRNA sequence

>rna1570 ID=rna1570|Name=rna1570|organism=Nannochloropsis gaditana|type=mRNA|length=3188bp
TATCCCACCTCTTAGATAGTGACCAAACTGCGAACAATGTGTCAATGACG
GCGGCTTGGCATAGCGTAGCGTTCACAAATTGCGTTGCTGTGGACGACAC
ATTGCAGCATTGCTTAGTTTGTCCTGACTCAACCTCACTGACTAATACCC
CGTCCTTGCGTACTTACACACCAATCTACAGTGTTTTAAGAGCTCACCAA
ACCCCGCTTCATTTAATCGAAGCGCCCGGCTCCGCGCGTCACATCTTTCT
CGCGCACAAGATTTGCACCTCCTGTCAGGCGGAAAGCAACCTCCACGCAA
GCACTTTATAGAAACGAATCTCTTGGCTCCCGTTCACTTACGGGAACTAG
TCGAGGGCTTTGTTTTGCACATCACCTAGCACCACGTCTCTCATCACCGC
CGCATCCTCGTGCTCGACTCACCGCACCCTAACTGGGTTTTTGCACTCTG
CCTCTCTCGTCGAGCTCGCTGTCCTAGCCAGCCACTTCTTGAGCCAAGTG
CACCTTACCGGCCCCAAGGCCGCCTTCCATCACAGTCAAGTACACGGGGG
TACAACCGTCTAGGTTCGGTACTCGTTCCAGAGGCAGCAAAAGCAGCAAG
CCCTTTTTACCTTCTTTTCAAGCGACCGAAATATGACGTACGAATACGTA
CATCAACGTCAGCAGCACGACAGCAGCTCCGACATGGACACAGCCCTACT
GGTGCCTGATGTCACAAGCATCCCCATGCCTTTACGAGCAGAATCTCTTC
GTAAACTCGAGGTAGTGGGGTCCTGCAACGGCCTCGCCTCGACCCAGCAA
GCCTCAGGGGCCTCTGACACGGGCGAGGGGGGAAACCGGCGCAGCTCTCC
TGCTTTCTCGGCAGCCACAAGCCGCGCAGACAAAGCAGAGAATGTTGGGG
AAGAGAACGACGATCAGTCCCGGACATCGGGCTCCGATCTGGTCCCCACC
ACCACAGACGACAGCGACGAAGAGGACACCTCCTCGCTCGCCACGGACGA
GACGCCCGACCACCTGCAGCGACACGCTGACTCCTTCTTGAGTGTGGACC
GTGGTTCTCTGCTCGCTCCTCCCGTGGAGGGCGGGAAGAAAGTCCTGGTC
ACGGGCGGGGCCGGATTCGTAGGTAGCCACGTGGCGGACCATCTCTTGAG
CCGCGGGGACGCCGTCGTCGTGGTGGACGAGTTCAACGACTACTACGACA
CCTCCTTGAAGCGCGCCAACGTCGCCCACCTCCTGGCCAAGCATGGGTCG
GCGCGTTTGCGGGTGGTGGAGGCGGACATATGCGACGCGCATGCGATGGA
ACAACTCTTCATCACAGAGCGGCCCCGTCACGTGGTGCACATGGCGGCGC
GTGCAGGGGTGCGGCCGTCCATCGATGATCCTTTCATCTACATCCACAGC
AACATGCTCGGGACCACGCGCTTGCTGGAACTGGCGCGCATCCACGGCAA
CGACTGCTTCGTGTGGGCGTCGAGCAGCTCGGTGTATGGGGGGTCGAGCC
TGGAGGAGTTCGGCGAGGACGACTACGTGGACAACCCGGTCTCTCCCTAC
GCGGCCACCAAGAAGGCCTGCGAGCTCATGACCCACACCTACCACTCGCT
CTACAAGATGAACGTGACCGGCTTGCGCTTCTTCACGGTGTACGGCCCCC
GGGGCCGGCCCGACATGGCGCCCTTCAAGTTCGTGGACCGCGTCTCCCGC
GGGCTGGAGATCCAGCAGTTTGGAGACGGATCCTCCTCCCGGGACTACAC
CTACATCGACGACATCGTCGACGGCGTGGTGCGTGCCCTGGACCGGCCGT
TGGGCTACCAGATTTTCAACCTGGGCAACGGCTCGCCGTACCGCTTGTCG
GACTTTATCCGCCTGGTGGAGAAAAACGTGGGAAAAGCGGCGGTGATCAA
AGTCCTGCCGGATCAGCCGGGGGATGTGCCTAGGACGTGCGCGAACATCA
GCAAAGCCCAAGAGCTGCTGGGTTATCAGCCCAAGGTGTCGTTCGAAGAA
GGGATCGCGAGGACTGTCGATTGGTACAAGGGTTGGAGGGCAGAGAAGAG
CATGGAGGCGGAGAAAGAGGAGAAGAAAACCCGGGAGGGAAAAGCGGGAA
AGAAGGCGGATAAGAGCACGAAAGGCGTGCAGCCGGGAAATATGGCGCGC
GTAGCGTCGGCGGCCTCGGTCTTCAGCCAGGGAGGCTTGAGCGGTTAGCG
TCACCCTGCAGGGGCGTGCGCCACGGCGATATTGATACCGTGGGATTTTG
ATGGAGTGCGCACACTATAGAGATAAGAAGAAGAAAAAAGCTGACGAGAA
ATTTAGTAAGGTACATGAGTCAATGACCTAGAGGCACATGGAGGCACGGG
TTTGTGGTATGCAGGAAAGTGGCGAGGAACCGCCAAGAAAACAGAAAAAG
ACGAGAGAGGCACGACTGCTATTAAGCATTCTTGACGCATTGCTCTCACT
GTCGCATGTATAGAATGGAGTTTTGCCGCAGGGCTAGCGAGCTTAGCGAC
AGTATGCTTGTTTGCGGTTTGGTCTCGAAGGAGACGCCTTTCCGTCCCTG
GCCTTTGTTGCCGTTGCTGGCCGTCACATTTGTGTACATATGGGATATGA
ATACGCTACCGAACAAAATCTAAAAACAAGAAAGGAGGAGCAGCCTCGGA
GATAGGAATGATATCGCTCCACTGACGGTGAAAGTGGAGGAGGGCTTGCC
TGTGTCGGAACGAGGATGCAGGAGGAGGACCAGAACAGAGTTGGGGTTTC
GGTGTTTCGGAACGCAGCTGTCTCTTCGTGTTGTCTAAAGCCGAATCTCT
AGAAGTAACGTGGAGATCGGGACAGATGCGGAAAGGGGCTGCAAGAAAAG
AGAATCGAAATTGGCAAACATATGACCGTTTTGAGCGATCCCTGCACTTG
GGGGTGACTGAAAACATAAGAATTAGTAAGTAGTGAAGTTCACATGTGCG
TGCGGTGCAAGTCGAGCAATTTGTGGCTTCATTTCGACGAGAGTGCAAAA
AAAATAAAATGAGACATGATGTTAGACTGTCGTCAACATGAGAGCCATCC
CTTTACGCGGGTGGGGCCATTTCTTCTCCGATGATCATCGGAATATAGCC
CTTCGCTCTCGGCCCTCTAAAAAATCTCGTCTGGCGCATTCACGTCAGAA
GCGCCCCGGGCGTCGCCCTTGTCCTCTCCCTCCCGTCC

protein sequence of rna1570

>rna1570-protein ID=rna1570-protein|Name=rna1570|organism=Nannochloropsis gaditana|type=polypeptide|length=492bp
MVTNGKKKDGKEKNTHPDVDLDSDPAKGVEDDVQTFEALGVVKPLCEACA
AIGWTKPTGIQQQAIPAALQGRDVIGLAETGSGKTGAFALPVLQALLAKP
QRLFAVVLAPTRELAFQIHEVFEALGASIGLKSCCVVGGVDMMTQAIALA
RKPHVVVATPGRLVDHLENTKGFHIREARFLVLDEADRMLSMDFEEEINK
ILAIMPTGKHRRTLLFSATMTSKVAKLQRASLTDPVKVEASDKFTTPRTL
VQQYLFIPAKYKDCYLAYALNEAAGQTILVFVATCNNAQRLALLLRNLGF
GAICLHGQMTQPKRLGALHKFKSGQRSILIATDVASRGLDIPAVDLVINF
DIPSHGKDYIHRVGRTARAGRAGRSIAMVTQYDVEVYQRLEALLGTKLPE
YKTDEETVLILLERVSEAQRIAARELRELTLGGGKKGGRKRGRDGEGDED
EGGEGGREAGGKPLKAGQGALKRGGGRGRTGGRGQGRRPGRF

mRNA from alignment at CM002457.1:958348..959989-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1570 ID=rna1570|Name=rna1570|organism=Nannochloropsis gaditana|type=mRNA|length=1642bp|location=Sequence derived from alignment at CM002457.1:958348..959989- (Nannochloropsis gaditana)
ACGCTCATTCCATCCTTTGTTCCATTGACCTCAGGCCTTGATTGCCTCAG
TAAGGTCTGACTTTCTTGAGGTAATCAACGTATCCGCGCAGGCCCAGCAA
CCAACCTCCTCCCTCCCTTGGGCTACCCCCTTGGCGTTTACCAACTCCAT
TTCCGCCTCACGCATGGTTACAAACGGCAAAAAAAAGGATGGGAAGGAAA
AAAACACACATCCTGACGTCGATCTGGATTCTGACCCAGCCAAAGGGGTT
GAGGATGACGTGCAGACCTTCGAGGCGCTGGGTGTGGTCAAGCCTCTCTG
TGAGGCCTGCGCAGCGATCGGATGGACGAAACCCACGGGAATCCAGCAAC
AAGCTATCCCAGCGGCTCTACAGGGCCGTGATGTGATCGGGCTGGCTGAG
ACAGGTTCAGGCAAGACTGGTGCGTTTGCTTTGCCGGTGCTGCAAGCCTT
GTTGGCAAAGCCTCAACGCCTTTTTGCGGTTGTGCTCGCCCCGACACGTG
AGCTGGCGTTCCAGATACACGAAGTCTTCGAGGCCTTGGGTGCAAGCATT
GGCCTCAAATCCTGCTGTGTGGTAGGAGGTGTGGACATGATGACGCAGGC
GATCGCATTGGCACGCAAACCGCACGTGGTGGTGGCCACCCCGGGGCGTC
TGGTCGACCATTTGGAGAACACAAAGGGTTTCCACATCCGCGAGGCCCGC
TTCCTGGTACTGGACGAGGCCGATCGCATGCTCTCCATGGATTTCGAGGA
GGAGATCAACAAGATTTTGGCCATCATGCCCACGGGGAAGCACCGCCGGA
CCCTCCTTTTCAGCGCGACCATGACCTCGAAAGTAGCCAAGCTCCAGCGT
GCCTCCCTCACCGACCCGGTCAAGGTGGAGGCATCCGACAAGTTCACGAC
GCCCCGTACCCTCGTGCAGCAGTATCTCTTCATCCCCGCCAAGTACAAGG
ACTGCTACCTGGCCTACGCGCTCAACGAGGCCGCCGGCCAGACCATCCTC
GTCTTCGTCGCCACATGCAACAACGCTCAGCGCCTCGCCCTCCTGCTCCG
CAACCTGGGCTTCGGTGCCATTTGTCTCCACGGGCAGATGACCCAACCCA
AGCGCCTGGGGGCCCTCCACAAATTCAAGTCGGGCCAGCGCTCCATCCTC
ATCGCCACGGACGTAGCCTCCCGGGGCCTAGACATCCCCGCGGTGGACTT
GGTCATCAATTTCGACATCCCCTCCCACGGGAAGGACTACATCCACCGGG
TGGGCCGCACTGCGCGCGCAGGCCGGGCGGGAAGATCCATCGCCATGGTC
ACGCAGTATGACGTGGAGGTGTATCAGCGGCTCGAAGCCTTGCTGGGAAC
CAAGCTCCCTGAGTACAAAACCGACGAGGAGACGGTCTTGATCCTGCTGG
AGAGGGTCAGTGAGGCACAACGGATTGCGGCGAGGGAATTGCGGGAGCTG
ACTTTGGGAGGGGGGAAGAAGGGGGGGAGGAAGCGGGGGAGAGATGGGGA
GGGCGACGAGGACGAGGGAGGGGAAGGCGGGAGGGAGGCAGGGGGCAAAC
CCTTGAAGGCCGGCCAGGGCGCGTTGAAGAGGGGGGGGGGTCGTGGGAGG
ACGGGAGGGAGAGGACAAGGGCGACGCCCGGGGCGCTTCTGA

Coding sequence (CDS) from alignment at CM002457.1:958348..959989-

>rna1570 ID=rna1570|Name=rna1570|organism=Nannochloropsis gaditana|type=CDS|length=1479bp|location=Sequence derived from alignment at CM002457.1:958348..959989- (Nannochloropsis gaditana)
ATGGTTACAAACGGCAAAAAAAAGGATGGGAAGGAAAAAAACACACATCC
TGACGTCGATCTGGATTCTGACCCAGCCAAAGGGGTTGAGGATGACGTGC
AGACCTTCGAGGCGCTGGGTGTGGTCAAGCCTCTCTGTGAGGCCTGCGCA
GCGATCGGATGGACGAAACCCACGGGAATCCAGCAACAAGCTATCCCAGC
GGCTCTACAGGGCCGTGATGTGATCGGGCTGGCTGAGACAGGTTCAGGCA
AGACTGGTGCGTTTGCTTTGCCGGTGCTGCAAGCCTTGTTGGCAAAGCCT
CAACGCCTTTTTGCGGTTGTGCTCGCCCCGACACGTGAGCTGGCGTTCCA
GATACACGAAGTCTTCGAGGCCTTGGGTGCAAGCATTGGCCTCAAATCCT
GCTGTGTGGTAGGAGGTGTGGACATGATGACGCAGGCGATCGCATTGGCA
CGCAAACCGCACGTGGTGGTGGCCACCCCGGGGCGTCTGGTCGACCATTT
GGAGAACACAAAGGGTTTCCACATCCGCGAGGCCCGCTTCCTGGTACTGG
ACGAGGCCGATCGCATGCTCTCCATGGATTTCGAGGAGGAGATCAACAAG
ATTTTGGCCATCATGCCCACGGGGAAGCACCGCCGGACCCTCCTTTTCAG
CGCGACCATGACCTCGAAAGTAGCCAAGCTCCAGCGTGCCTCCCTCACCG
ACCCGGTCAAGGTGGAGGCATCCGACAAGTTCACGACGCCCCGTACCCTC
GTGCAGCAGTATCTCTTCATCCCCGCCAAGTACAAGGACTGCTACCTGGC
CTACGCGCTCAACGAGGCCGCCGGCCAGACCATCCTCGTCTTCGTCGCCA
CATGCAACAACGCTCAGCGCCTCGCCCTCCTGCTCCGCAACCTGGGCTTC
GGTGCCATTTGTCTCCACGGGCAGATGACCCAACCCAAGCGCCTGGGGGC
CCTCCACAAATTCAAGTCGGGCCAGCGCTCCATCCTCATCGCCACGGACG
TAGCCTCCCGGGGCCTAGACATCCCCGCGGTGGACTTGGTCATCAATTTC
GACATCCCCTCCCACGGGAAGGACTACATCCACCGGGTGGGCCGCACTGC
GCGCGCAGGCCGGGCGGGAAGATCCATCGCCATGGTCACGCAGTATGACG
TGGAGGTGTATCAGCGGCTCGAAGCCTTGCTGGGAACCAAGCTCCCTGAG
TACAAAACCGACGAGGAGACGGTCTTGATCCTGCTGGAGAGGGTCAGTGA
GGCACAACGGATTGCGGCGAGGGAATTGCGGGAGCTGACTTTGGGAGGGG
GGAAGAAGGGGGGGAGGAAGCGGGGGAGAGATGGGGAGGGCGACGAGGAC
GAGGGAGGGGAAGGCGGGAGGGAGGCAGGGGGCAAACCCTTGAAGGCCGG
CCAGGGCGCGTTGAAGAGGGGGGGGGGTCGTGGGAGGACGGGAGGGAGAG
GACAAGGGCGACGCCCGGGGCGCTTCTGA

Synonyms

Publications