EWM29212.1, cds1566 (CDS) Nannochloropsis gaditana

Overview
NameEWM29212.1
Unique Namecds1566
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:958348..959826 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM29212.1
Productdead deah box rna
Orig transcript idgnl|cribi|Naga_100007g2.6539.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:958348..959826 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0000166nucleotide binding
GO:0003676nucleic acid binding
GO:0005524ATP binding
Vocabulary: INTERPRO
TermDefinition
IPR014014RNA_helicase_DEAD_Q_motif
IPR000629RNA-helicase_DEAD-box_CS
IPR011545DEAD/DEAH_box_helicase_dom
IPR027417P-loop_NTPase
IPR001650Helicase_C
IPR014001Helicase_ATP-bd
Homology
BLAST of EWM29212.1 vs. NCBI_GenBank
Match: gi|585111732|gb|EWM29212.1| (dead deah box rna [Nannochloropsis gaditana])

HSP 1 Score: 996.882 bits (2576), Expect = 0.000e+0
Identity = 492/492 (100.00%), Postives = 492/492 (100.00%), Query Frame = 0
Query:    1 MVTNGKKKDGKEKNTHPDVDLDSDPAKGVEDDVQTFEALGVVKPLCEACAAIGWTKPTGIQQQAIPAALQGRDVIGLAETGSGKTGAFALPVLQALLAKPQRLFAVVLAPTRELAFQIHEVFEALGASIGLKSCCVVGGVDMMTQAIALARKPHVVVATPGRLVDHLENTKGFHIREARFLVLDEADRMLSMDFEEEINKILAIMPTGKHRRTLLFSATMTSKVAKLQRASLTDPVKVEASDKFTTPRTLVQQYLFIPAKYKDCYLAYALNEAAGQTILVFVATCNNAQRLALLLRNLGFGAICLHGQMTQPKRLGALHKFKSGQRSILIATDVASRGLDIPAVDLVINFDIPSHGKDYIHRVGRTARAGRAGRSIAMVTQYDVEVYQRLEALLGTKLPEYKTDEETVLILLERVSEAQRIAARELRELTLGGGKKGGRKRGRDGEGDEDEGGEGGREAGGKPLKAGQGALKRGGGRGRTGGRGQGRRPGRF 492
            MVTNGKKKDGKEKNTHPDVDLDSDPAKGVEDDVQTFEALGVVKPLCEACAAIGWTKPTGIQQQAIPAALQGRDVIGLAETGSGKTGAFALPVLQALLAKPQRLFAVVLAPTRELAFQIHEVFEALGASIGLKSCCVVGGVDMMTQAIALARKPHVVVATPGRLVDHLENTKGFHIREARFLVLDEADRMLSMDFEEEINKILAIMPTGKHRRTLLFSATMTSKVAKLQRASLTDPVKVEASDKFTTPRTLVQQYLFIPAKYKDCYLAYALNEAAGQTILVFVATCNNAQRLALLLRNLGFGAICLHGQMTQPKRLGALHKFKSGQRSILIATDVASRGLDIPAVDLVINFDIPSHGKDYIHRVGRTARAGRAGRSIAMVTQYDVEVYQRLEALLGTKLPEYKTDEETVLILLERVSEAQRIAARELRELTLGGGKKGGRKRGRDGEGDEDEGGEGGREAGGKPLKAGQGALKRGGGRGRTGGRGQGRRPGRF
Sbjct:    1 MVTNGKKKDGKEKNTHPDVDLDSDPAKGVEDDVQTFEALGVVKPLCEACAAIGWTKPTGIQQQAIPAALQGRDVIGLAETGSGKTGAFALPVLQALLAKPQRLFAVVLAPTRELAFQIHEVFEALGASIGLKSCCVVGGVDMMTQAIALARKPHVVVATPGRLVDHLENTKGFHIREARFLVLDEADRMLSMDFEEEINKILAIMPTGKHRRTLLFSATMTSKVAKLQRASLTDPVKVEASDKFTTPRTLVQQYLFIPAKYKDCYLAYALNEAAGQTILVFVATCNNAQRLALLLRNLGFGAICLHGQMTQPKRLGALHKFKSGQRSILIATDVASRGLDIPAVDLVINFDIPSHGKDYIHRVGRTARAGRAGRSIAMVTQYDVEVYQRLEALLGTKLPEYKTDEETVLILLERVSEAQRIAARELRELTLGGGKKGGRKRGRDGEGDEDEGGEGGREAGGKPLKAGQGALKRGGGRGRTGGRGQGRRPGRF 492          
BLAST of EWM29212.1 vs. NCBI_GenBank
Match: gi|553193625|ref|XP_005855808.1| (dead deah box rna, partial [Nannochloropsis gaditana CCMP526] >gi|422293255|gb|EKU20555.1| dead deah box rna, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 848.581 bits (2191), Expect = 0.000e+0
Identity = 414/414 (100.00%), Postives = 414/414 (100.00%), Query Frame = 0
Query:    1 MVTNGKKKDGKEKNTHPDVDLDSDPAKGVEDDVQTFEALGVVKPLCEACAAIGWTKPTGIQQQAIPAALQGRDVIGLAETGSGKTGAFALPVLQALLAKPQRLFAVVLAPTRELAFQIHEVFEALGASIGLKSCCVVGGVDMMTQAIALARKPHVVVATPGRLVDHLENTKGFHIREARFLVLDEADRMLSMDFEEEINKILAIMPTGKHRRTLLFSATMTSKVAKLQRASLTDPVKVEASDKFTTPRTLVQQYLFIPAKYKDCYLAYALNEAAGQTILVFVATCNNAQRLALLLRNLGFGAICLHGQMTQPKRLGALHKFKSGQRSILIATDVASRGLDIPAVDLVINFDIPSHGKDYIHRVGRTARAGRAGRSIAMVTQYDVEVYQRLEALLGTKLPEYKTDEETVLILLER 414
            MVTNGKKKDGKEKNTHPDVDLDSDPAKGVEDDVQTFEALGVVKPLCEACAAIGWTKPTGIQQQAIPAALQGRDVIGLAETGSGKTGAFALPVLQALLAKPQRLFAVVLAPTRELAFQIHEVFEALGASIGLKSCCVVGGVDMMTQAIALARKPHVVVATPGRLVDHLENTKGFHIREARFLVLDEADRMLSMDFEEEINKILAIMPTGKHRRTLLFSATMTSKVAKLQRASLTDPVKVEASDKFTTPRTLVQQYLFIPAKYKDCYLAYALNEAAGQTILVFVATCNNAQRLALLLRNLGFGAICLHGQMTQPKRLGALHKFKSGQRSILIATDVASRGLDIPAVDLVINFDIPSHGKDYIHRVGRTARAGRAGRSIAMVTQYDVEVYQRLEALLGTKLPEYKTDEETVLILLER
Sbjct:    1 MVTNGKKKDGKEKNTHPDVDLDSDPAKGVEDDVQTFEALGVVKPLCEACAAIGWTKPTGIQQQAIPAALQGRDVIGLAETGSGKTGAFALPVLQALLAKPQRLFAVVLAPTRELAFQIHEVFEALGASIGLKSCCVVGGVDMMTQAIALARKPHVVVATPGRLVDHLENTKGFHIREARFLVLDEADRMLSMDFEEEINKILAIMPTGKHRRTLLFSATMTSKVAKLQRASLTDPVKVEASDKFTTPRTLVQQYLFIPAKYKDCYLAYALNEAAGQTILVFVATCNNAQRLALLLRNLGFGAICLHGQMTQPKRLGALHKFKSGQRSILIATDVASRGLDIPAVDLVINFDIPSHGKDYIHRVGRTARAGRAGRSIAMVTQYDVEVYQRLEALLGTKLPEYKTDEETVLILLER 414          
BLAST of EWM29212.1 vs. NCBI_GenBank
Match: gi|298711460|emb|CBJ32599.1| (DEAD box helicase [Ectocarpus siliculosus])

HSP 1 Score: 652.899 bits (1683), Expect = 0.000e+0
Identity = 307/399 (76.94%), Postives = 354/399 (88.72%), Query Frame = 0
Query:   30 EDDVQTFEALGVVKPLCEACAAIGWTKPTGIQQQAIPAALQGRDVIGLAETGSGKTGAFALPVLQALLAKPQRLFAVVLAPTRELAFQIHEVFEALGASIGLKSCCVVGGVDMMTQAIALARKPHVVVATPGRLVDHLENTKGFHIREARFLVLDEADRMLSMDFEEEINKILAIMPTGKHRRTLLFSATMTSKVAKLQRASLTDPVKVEASDKFTTPRTLVQQYLFIPAKYKDCYLAYALNEAAGQTILVFVATCNNAQRLALLLRNLGFGAICLHGQMTQPKRLGALHKFKSGQRSILIATDVASRGLDIPAVDLVINFDIPSHGKDYIHRVGRTARAGRAGRSIAMVTQYDVEVYQRLEALLGTKLPEYKTDEETVLILLERVSEAQRIAARELRE 428
            ED   +FE+LGV  PLCEA A +GWT  T IQ+QA+P A +G+DVIGLAETGSGKTGAFALP+LQALL  PQRLFAV++APTRELAFQI+EV EALG  IGLK+ C+VGG+DM  Q++ALA KPHVV+ATPGRLVDHLENTKGF +R A++LVLDEADRML MDFEEEINK+L+++P  + RRT LFSATMTSKVAKLQRASL +P +VE ++KF+TP+TLVQQYLFIPAK+KDCYLAY LNE AGQ+ +VFV+TCNNAQR+ALLLRNLGF A+CLHGQM QPKRLGAL KFKSGQR++LIATDVASRGLDIP+VDLV+N +IPSHGKDYIHRVGRTARAGRAGRSIA VTQYDVEVYQR+EAL+G KLP Y  DEETVL+L ERV EAQR+AARE+RE
Sbjct:  402 EDIKASFESLGVTGPLCEAAAQLGWTHATEIQRQALPLAFEGKDVIGLAETGSGKTGAFALPILQALLENPQRLFAVIMAPTRELAFQINEVMEALGVGIGLKTVCIVGGIDMFQQSVALALKPHVVIATPGRLVDHLENTKGFSLRTAKYLVLDEADRMLGMDFEEEINKVLSVLP--RERRTFLFSATMTSKVAKLQRASLKNPARVEVANKFSTPKTLVQQYLFIPAKHKDCYLAYVLNEFAGQSTIVFVSTCNNAQRVALLLRNLGFQAVCLHGQMGQPKRLGALGKFKSGQRNVLIATDVASRGLDIPSVDLVVNMEIPSHGKDYIHRVGRTARAGRAGRSIAFVTQYDVEVYQRMEALIGQKLPPYVCDEETVLVLQERVGEAQRMAAREMRE 798          
BLAST of EWM29212.1 vs. NCBI_GenBank
Match: gi|673015884|ref|XP_008861903.1| (hypothetical protein H310_00784 [Aphanomyces invadans] >gi|574483501|gb|ETW10492.1| hypothetical protein H310_00784 [Aphanomyces invadans])

HSP 1 Score: 626.706 bits (1615), Expect = 0.000e+0
Identity = 303/444 (68.24%), Postives = 359/444 (80.86%), Query Frame = 0
Query:   29 VEDDVQ----TFEALGVVKPLCEACAAIGWTKPTGIQQQAIPAALQGRDVIGLAETGSGKTGAFALPVLQALLAKPQRLFAVVLAPTRELAFQIHEVFEALGASIGLKSCCVVGGVDMMTQAIALARKPHVVVATPGRLVDHLENTKGFHIREARFLVLDEADRMLSMDFEEEINKILAIMPTGKHRRTLLFSATMTSKVAKLQRASLTDPVKVEASDKFTTPRTLVQQYLFIPAKYKDCYLAYALNEAAGQTILVFVATCNNAQRLALLLRNLGFGAICLHGQMTQPKRLGALHKFKSGQRSILIATDVASRGLDIPAVDLVINFDIPSHGKDYIHRVGRTARAGRAGRSIAMVTQYDVEVYQRLEALLGTKLPEYKTDEETVLILLERVSEAQRIAARELRELTLGGGKKGGRKRGRDGEGDEDEGGEGGREAGGKPLKAGQ 468
            VEDD Q    +F  LGV   LCE+ AA+GWT+P+ IQQ+++P AL G+D+IGLAETGSGKTGAF +P+LQ LLA PQRLFA+VLAPTRELAFQI E FEALG+SIGLK  CVVGG+DMM Q +ALA+KPHVV+ATPGRLVDHLENTKGF +R  ++LVLDEADRMLSMDFEEEIN+I+ +MP    RRT LFSATMTSKVAKLQRASL  PVKVE + KF TP TL Q+YLFIPAKYKDCYLAY LNE AGQ++L+F +TCN  QR+ L+LR+LGF AICLHGQMTQP RLGAL+KFK+ QRSIL+ TDVASRGLDIP+VD+VIN+DIP++GKDYIHRVGRTARAGRAG +++ VTQYDVE+YQR+E LLG KL  Y  +E TVL++LERV EAQR A  EL+E T     KG  KR R G+  E +G      +  +P K+ +
Sbjct:   20 VEDDEQIEDKSFSELGVNPALCESIAALGWTRPSKIQQKSLPPALAGKDIIGLAETGSGKTGAFVIPILQDLLASPQRLFALVLAPTRELAFQISEQFEALGSSIGLKCACVVGGIDMMNQQVALAKKPHVVIATPGRLVDHLENTKGFSLRTMKYLVLDEADRMLSMDFEEEINQIIQLMPN--ERRTYLFSATMTSKVAKLQRASLKSPVKVEITHKFATPETLAQKYLFIPAKYKDCYLAYVLNEFAGQSMLIFASTCNGTQRMTLMLRSLGFPAICLHGQMTQPNRLGALNKFKAKQRSILVCTDVASRGLDIPSVDVVINYDIPTNGKDYIHRVGRTARAGRAGIALSFVTQYDVELYQRIEHLLGKKLDAYACEESTVLVMLERVGEAQRAATIELKEET----SKGTGKRARYGKNHEGDGDGDDESSNKRPYKSSK 457          
BLAST of EWM29212.1 vs. NCBI_GenBank
Match: gi|301119991|ref|XP_002907723.1| (DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4] >gi|262106235|gb|EEY64287.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4])

HSP 1 Score: 623.239 bits (1606), Expect = 0.000e+0
Identity = 300/436 (68.81%), Postives = 355/436 (81.42%), Query Frame = 0
Query:   20 DLDSDPAKGVEDDVQTFEALGVVKPLCEACAAIGWTKPTGIQQQAIPAALQGRDVIGLAETGSGKTGAFALPVLQALLAKPQRLFAVVLAPTRELAFQIHEVFEALGASIGLKSCCVVGGVDMMTQAIALARKPHVVVATPGRLVDHLENTKGFHIREARFLVLDEADRMLSMDFEEEINKILAIMPTGKHRRTLLFSATMTSKVAKLQRASLTDPVKVEASDKFTTPRTLVQQYLFIPAKYKDCYLAYALNEAAGQTILVFVATCNNAQRLALLLRNLGFGAICLHGQMTQPKRLGALHKFKSGQRSILIATDVASRGLDIPAVDLVINFDIPSHGKDYIHRVGRTARAGRAGRSIAMVTQYDVEVYQRLEALLGTKLPEYKTDEETVLILLERVSEAQRIAARELRELTLGG-GKKGGRKRGRDGEGDEDEGGE 454
            D +++ A+G      +F  LGV   +CEA  A+GW+ P+ IQQQAIP  L G+D+IGLAETGSGKTGAF +P+LQ+LL  PQRL+A+VLAPTRELA+QI E FEALGASIGLK  CVVGG+DMM Q +ALARKPHVV+ATPGRLVDHLENTKGF +R  +FLVLDEADRMLSMDFEEEIN+I+ +MP    R T LFSATMTSKV KLQRASL DPVKVE + KF TP TL Q YLFIPAK+KDCYLAY LNE AGQ++L+F +TCN  Q++ L+LRNLGF AICLHGQM QP RLGAL+KFK+  R++L+ TDVASRGLDIP+VD+VIN+DIP+HGKDYIHRVGRTARAGRAG +I+ VTQYDVE+YQR+E LLGTKL  Y  +EETVL++ ERV+EAQRIA  E++E    G G K GR    D EGD++EGGE
Sbjct:   15 DANNETAEGFSGSA-SFAELGVDSAICEAIEAVGWSAPSKIQQQAIPHGLAGKDIIGLAETGSGKTGAFVIPILQSLLHNPQRLYALVLAPTRELAYQIGEQFEALGASIGLKCACVVGGIDMMQQQVALARKPHVVIATPGRLVDHLENTKGFSLRTMKFLVLDEADRMLSMDFEEEINQIVQLMPAD--RNTYLFSATMTSKVRKLQRASLKDPVKVEITHKFATPETLKQHYLFIPAKFKDCYLAYVLNEVAGQSVLIFASTCNGTQKVTLMLRNLGFQAICLHGQMPQPSRLGALNKFKAKARNVLVCTDVASRGLDIPSVDVVINYDIPTHGKDYIHRVGRTARAGRAGVAISFVTQYDVELYQRIEHLLGTKLDAYSCEEETVLVITERVNEAQRIATIEMKEAAANGTGIKRGRYARDDNEGDDEEGGE 447          
BLAST of EWM29212.1 vs. NCBI_GenBank
Match: gi|698789384|ref|XP_009827724.1| (hypothetical protein H257_04796 [Aphanomyces astaci] >gi|574117571|gb|ETV83053.1| hypothetical protein H257_04796 [Aphanomyces astaci])

HSP 1 Score: 620.157 bits (1598), Expect = 0.000e+0
Identity = 300/424 (70.75%), Postives = 354/424 (83.49%), Query Frame = 0
Query:   29 VEDDVQTFEALGVVKPLCEACAAIGWTKPTGIQQQAIPAALQGRDVIGLAETGSGKTGAFALPVLQALLAKPQRLFAVVLAPTRELAFQIHEVFEALGASIGLKSCCVVGGVDMMTQAIALARKPHVVVATPGRLVDHLENTKGFHIREARFLVLDEADRMLSMDFEEEINKILAIMPTGKHRRTLLFSATMTSKVAKLQRASLTDPVKVEASDKFTTPRTLVQQYLFIPAKYKDCYLAYALNEAAGQTILVFVATCNNAQRLALLLRNLGFGAICLHGQMTQPKRLGALHKFKSGQRSILIATDVASRGLDIPAVDLVINFDIPSHGKDYIHRVGRTARAGRAGRSIAMVTQYDVEVYQRLEALLGTKLPEYKTDEETVLILLERVSEAQRIAARELRELTLGGGKKGGRKRGRDGEGDEDEG 452
            +ED  ++F  LGV   LCE+ AA+GWT+P+ IQQ+++PAAL G+D+IGLAETGSGKTGAF +P+LQ LL  PQRLFA+VLAPTRELAFQI E FEALG+SIGLK  CVVGG+DMM Q +ALA+KPHVV+ATPGRLVDHLENTKGF +R  ++LVLDEADRMLSMDFEEEIN+I+ +MP    RRT LFSATMTSKVAKLQRASL  PVKVE + KF TP TL Q+YLFIPAKYKDCYLAY LNE AGQ++L+F +TCN  QR+ L+LR+LGF AICLHGQMTQP RLGAL+KFK+ QRSIL+ TDVASRGLDIP+VD+VINFDIP++GKDYIHRVGRTARAGRAG +++ VTQYDVE+YQR+E LLG KL  Y  +E TVL++LERV EAQR A  EL+E T  G  K  R  G++ EGD D+G
Sbjct:   30 IED--KSFLELGVNPALCESIAALGWTRPSKIQQKSLPAALAGKDIIGLAETGSGKTGAFVIPILQDLLLSPQRLFALVLAPTRELAFQISEQFEALGSSIGLKCACVVGGIDMMNQQVALAKKPHVVIATPGRLVDHLENTKGFSLRTMKYLVLDEADRMLSMDFEEEINQIIQLMPN--ERRTYLFSATMTSKVAKLQRASLQSPVKVEITHKFATPETLAQKYLFIPAKYKDCYLAYVLNEFAGQSMLIFASTCNGTQRITLMLRSLGFPAICLHGQMTQPNRLGALNKFKAKQRSILVCTDVASRGLDIPSVDVVINFDIPTNGKDYIHRVGRTARAGRAGIALSFVTQYDVELYQRIEHLLGKKLDTYACEESTVLVMLERVGEAQRAATIELKEETSKGTGKRAR-YGKNHEGDGDDG 448          
BLAST of EWM29212.1 vs. NCBI_GenBank
Match: gi|325191409|emb|CCA26186.1| (DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14])

HSP 1 Score: 619.387 bits (1596), Expect = 0.000e+0
Identity = 299/456 (65.57%), Postives = 358/456 (78.51%), Query Frame = 0
Query:    1 MVTNGKKKDGKEKNTHPDVDLDSDPAKGVEDDVQTFEALGVVKPLCEACAAIGWTKPTGIQQQAIPAALQGRDVIGLAETGSGKTGAFALPVLQALLAKPQRLFAVVLAPTRELAFQIHEVFEALGASIGLKSCCVVGGVDMMTQAIALARKPHVVVATPGRLVDHLENTKGFHIREARFLVLDEADRMLSMDFEEEINKILAIMPTGKHRRTLLFSATMTSKVAKLQRASLTDPVKVEASDKFTTPRTLVQQYLFIPAKYKDCYLAYALNEAAGQTILVFVATCNNAQRLALLLRNLGFGAICLHGQMTQPKRLGALHKFKSGQRSILIATDVASRGLDIPAVDLVINFDIPSHGKDYIHRVGRTARAGRAGRSIAMVTQYDVEVYQRLEALLGTKLPEYKTDEETVLILLERVSEAQRIAARELRELTLGGGKKGGRKRGRDGEGDEDEGGEGG 456
            MV N +  D  E   +P      D   G   D QTFE LGV   LCEA A++GW+KP+ IQQ+AIP  L GRD+IGLAETGSGKTGAF +P+LQ+LL  PQRL+A+VLAPTRELA+QI E FEALGASIGLK  CVVGG+DMM Q IALARKPH+++ATPGRLVDHLENTKGF +R  +FLVLDEADRMLSMDFEEEIN+I+ +MP+   R T LFSATMTSKVAKLQRASL +P+K+E + KF TP  L Q YLFIPAK+KDCYL+Y LNE AGQ+IL+F +TCN  Q++ L+LRNLGF AICLHGQM+QP RLGAL+KFK+  R IL+ TDVASRGLDIP+VD+V+N+DIP+HGKDYIHRVGRTARAGRAG +++ VTQYDVE+YQR+E LLG KL  Y  DE+TVLI+ ERV EAQRIA  E++EL      K G++  R+ + D  +   G 
Sbjct:    1 MVGNPQSGDDAESIINPS----GDNCDGFSGD-QTFEQLGVDATLCEAIASLGWSKPSKIQQEAIPHGLAGRDLIGLAETGSGKTGAFVIPILQSLLRSPQRLYALVLAPTRELAYQISEQFEALGASIGLKCACVVGGIDMMNQQIALARKPHIIIATPGRLVDHLENTKGFSLRTIKFLVLDEADRMLSMDFEEEINQIVQLMPS--ERNTYLFSATMTSKVAKLQRASLLNPIKIEITHKFATPENLRQHYLFIPAKFKDCYLSYILNEVAGQSILIFASTCNGTQKVTLMLRNLGFQAICLHGQMSQPNRLGALNKFKAKTRKILVCTDVASRGLDIPSVDVVMNYDIPTHGKDYIHRVGRTARAGRAGIAVSFVTQYDVELYQRIEFLLGKKLDAYPCDEQTVLIMQERVGEAQRIATNEMKEL----ASKRGKRHDRESDDDNTDAHHGS 445          
BLAST of EWM29212.1 vs. NCBI_GenBank
Match: gi|1173961734|gb|OQS07690.1| (DEAD/DEAH box RNA helicase [Thraustotheca clavata])

HSP 1 Score: 616.305 bits (1588), Expect = 0.000e+0
Identity = 301/451 (66.74%), Postives = 363/451 (80.49%), Query Frame = 0
Query:   18 DVDLDSDPAKGVEDDVQTFEALGVVKPLCEACAAIGWTKPTGIQQQAIPAALQGRDVIGLAETGSGKTGAFALPVLQALLAKPQRLFAVVLAPTRELAFQIHEVFEALGASIGLKSCCVVGGVDMMTQAIALARKPHVVVATPGRLVDHLENTKGFHIREARFLVLDEADRMLSMDFEEEINKILAIMPTGKHRRTLLFSATMTSKVAKLQRASLTDPVKVEASDKFTTPRTLVQQYLFIPAKYKDCYLAYALNEAAGQTILVFVATCNNAQRLALLLRNLGFGAICLHGQMTQPKRLGALHKFKSGQRSILIATDVASRGLDIPAVDLVINFDIPSHGKDYIHRVGRTARAGRAGRSIAMVTQYDVEVYQRLEALLGTKLPEYKTDEETVLILLERVSEAQRIAARELRELTLGGGKKGGRKRGRDGEGDEDEGGEGGREAGGKPLKAGQ 468
            +V +D+D     E + ++F  LGV   + E+  A+GW  P+ IQQ+ +P AL G D+IGLAETGSGKTGAF +P+LQ LL  PQRLFA+VLAPTRELAFQI E FEALGASIGLK  CVVGG+DMM Q +ALA+KPH+V+ATPGRLVDHLENTKGF +R  ++LVLDEADRMLSMDFEEEIN+I+ +MP    RRT LFSATMTSKVAKLQRASL +PVKVE + KF TP TLVQ+YLFIPAKYKDCYLAY LNE AGQ++L+F ATCN  Q++ L+LR+LGF AICLHGQM+QP RLGAL+KFK+ QRSIL+ TDVASRGLDIP+VD+VIN+DIP++GKDYIHRVGRTARAGRAG ++++VTQY+VE+YQR+E LLG KL E+K +E TVL++LERV EAQR A  EL+E T     KG  KR R G+  ED+G +G      KP KA +
Sbjct:    8 EVVVDADE----ELETKSFLELGVDPTIVESITALGWKAPSKIQQKTLPPALAGHDLIGLAETGSGKTGAFVIPILQDLLQSPQRLFALVLAPTRELAFQISEQFEALGASIGLKCACVVGGIDMMNQQVALAKKPHIVIATPGRLVDHLENTKGFSLRTMKYLVLDEADRMLSMDFEEEINQIVQLMPND--RRTYLFSATMTSKVAKLQRASLKNPVKVEITHKFATPDTLVQKYLFIPAKYKDCYLAYILNEYAGQSVLIFAATCNATQKITLMLRSLGFPAICLHGQMSQPNRLGALNKFKAKQRSILVCTDVASRGLDIPSVDVVINYDIPTNGKDYIHRVGRTARAGRAGIALSVVTQYEVELYQRIEHLLGKKLIEFKCEESTVLVMLERVGEAQRAATLELKEET----SKGTGKRSRYGKNHEDDGDDGEGNPTKKPYKAAK 448          
BLAST of EWM29212.1 vs. NCBI_GenBank
Match: gi|1214708435|gb|OWZ19719.1| (DEAD/DEAH box RNA helicase [Phytophthora megakarya])

HSP 1 Score: 614.379 bits (1583), Expect = 0.000e+0
Identity = 296/424 (69.81%), Postives = 347/424 (81.84%), Query Frame = 0
Query:   20 DLDSDPAKGVEDDVQTFEALGVVKPLCEACAAIGWTKPTGIQQQAIPAALQGRDVIGLAETGSGKTGAFALPVLQALLAKPQRLFAVVLAPTRELAFQIHEVFEALGASIGLKSCCVVGGVDMMTQAIALARKPHVVVATPGRLVDHLENTKGFHIREARFLVLDEADRMLSMDFEEEINKILAIMPTGKHRRTLLFSATMTSKVAKLQRASLTDPVKVEASDKFTTPRTLVQQYLFIPAKYKDCYLAYALNEAAGQTILVFVATCNNAQRLALLLRNLGFGAICLHGQMTQPKRLGALHKFKSGQRSILIATDVASRGLDIPAVDLVINFDIPSHGKDYIHRVGRTARAGRAGRSIAMVTQYDVEVYQRLEALLGTKLPEYKTDEETVLILLERVSEAQRIAARELRELTLGGGKKGGRKRGR 443
            D +++ A G     QTF  LGV   +CEA AA+GW+ P+ IQQQAIP  L G+D+IGLAETGSGKTGAF +P+LQ LL  PQRL+A+VLAPTRELA+QI E FEALGASIGLK  CVVGG+DMM Q +ALARKPHVV+ATPGRLVDHLENTKGF +R  +FLVLDEADRMLSMDFEEEIN+I+ +MP    R T LFSATMTSKV KLQRASL DPVKVE + KF TP TL Q YLFIPAK+KDCYLAY LNE AGQ++L+F +TCN  Q++ L+LRNLGF AICLHGQM QP RLGAL+KFK+ QR++L+ TDVASRGLDIP+VD+VIN+DIP+HGKDYIHRVGRTARAGRAG +++ VTQYDVE+YQR+E LLGTKL  Y  +EETVL++ ERV+EAQRIA  E++E    G    G KRGR
Sbjct:    7 DANNEAADGFSGS-QTFAELGVDSAICEAIAAVGWSAPSKIQQQAIPHGLAGQDLIGLAETGSGKTGAFVIPILQRLLLNPQRLYALVLAPTRELAYQIGEQFEALGASIGLKCACVVGGIDMMQQQVALARKPHVVIATPGRLVDHLENTKGFSLRTMKFLVLDEADRMLSMDFEEEINQIVQLMP--PERNTYLFSATMTSKVRKLQRASLKDPVKVEITHKFATPETLKQHYLFIPAKFKDCYLAYVLNEVAGQSVLIFASTCNGTQKVTLMLRNLGFQAICLHGQMPQPSRLGALNKFKAKQRNVLVCTDVASRGLDIPSVDVVINYDIPTHGKDYIHRVGRTARAGRAGVAVSFVTQYDVELYQRIEHLLGTKLDAYSCEEETVLVMSERVNEAQRIATIEMKETAANG---TGTKRGR 424          
BLAST of EWM29212.1 vs. NCBI_GenBank
Match: gi|635371322|emb|CCI40477.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 612.453 bits (1578), Expect = 0.000e+0
Identity = 294/435 (67.59%), Postives = 350/435 (80.46%), Query Frame = 0
Query:    1 MVTNGKKKDGKEKNTHPDVDLDSDPAKGVEDDVQTFEALGVVKPLCEACAAIGWTKPTGIQQQAIPAALQGRDVIGLAETGSGKTGAFALPVLQALLAKPQRLFAVVLAPTRELAFQIHEVFEALGASIGLKSCCVVGGVDMMTQAIALARKPHVVVATPGRLVDHLENTKGFHIREARFLVLDEADRMLSMDFEEEINKILAIMPTGKHRRTLLFSATMTSKVAKLQRASLTDPVKVEASDKFTTPRTLVQQYLFIPAKYKDCYLAYALNEAAGQTILVFVATCNNAQRLALLLRNLGFGAICLHGQMTQPKRLGALHKFKSGQRSILIATDVASRGLDIPAVDLVINFDIPSHGKDYIHRVGRTARAGRAGRSIAMVTQYDVEVYQRLEALLGTKLPEYKTDEETVLILLERVSEAQRIAARELRELTLGGGK 435
            M  N  + DG +  ++       D   G   D QTFE LGV   LCEA A++GW+KP+ IQQ+AIP  L GRD+IGLAETGSGKTGAF +P+LQ+LL  PQRL+A+VLAPTRELA+QI E FEALGASIGLK  CVVGG+DMM Q IALARKPH+++ATPGRLVDHLENTKGF +R  RFLVLDEADRMLSMDFEEEIN+I+ +MP+   R T LFSATMTSKVAKLQRASL +P+K+E + KF TP  L Q YLFIPAK+KDCYL+Y LNE AGQ+IL+F +TCN  QR+ L+LRNLGF AICLHGQM+QP RLGAL+KFK+  R IL+ TDVASRGLDIP+VD+V+N+DI +HGKDYIHRVGRTARAGRAG ++++VTQYDVE+YQR+E LLG KL  Y  DE+TVL++ ERV EAQRIA  E++EL    GK
Sbjct:    1 MSANPPESDGVDSMSNST----GDKCDGFSGD-QTFEQLGVDATLCEAIASLGWSKPSKIQQEAIPHGLAGRDLIGLAETGSGKTGAFVIPILQSLLRSPQRLYALVLAPTRELAYQISEQFEALGASIGLKCACVVGGIDMMNQQIALARKPHIIIATPGRLVDHLENTKGFSLRTIRFLVLDEADRMLSMDFEEEINQIVQLMPS--ERNTYLFSATMTSKVAKLQRASLLNPIKIEITHKFATPENLRQHYLFIPAKFKDCYLSYILNEVAGQSILIFASTCNGTQRVTLMLRNLGFQAICLHGQMSQPNRLGALNKFKAKSRKILVCTDVASRGLDIPSVDVVMNYDISTHGKDYIHRVGRTARAGRAGIAVSLVTQYDVELYQRIEFLLGKKLDAYPCDEQTVLVMQERVGEAQRIATNEMKELASKRGK 428          
The following BLAST results are available for this feature:
BLAST of EWM29212.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111732|gb|EWM29212.1|0.000e+0100.00dead deah box rna [Nannochloropsis gaditana][more]
gi|553193625|ref|XP_005855808.1|0.000e+0100.00dead deah box rna, partial [Nannochloropsis gadita... [more]
gi|298711460|emb|CBJ32599.1|0.000e+076.94DEAD box helicase [Ectocarpus siliculosus][more]
gi|673015884|ref|XP_008861903.1|0.000e+068.24hypothetical protein H310_00784 [Aphanomyces invad... [more]
gi|301119991|ref|XP_002907723.1|0.000e+068.81DEAD/DEAH box RNA helicase, putative [Phytophthora... [more]
gi|698789384|ref|XP_009827724.1|0.000e+070.75hypothetical protein H257_04796 [Aphanomyces astac... [more]
gi|325191409|emb|CCA26186.1|0.000e+065.57DEAD/DEAH box RNA helicase putative [Albugo laibac... [more]
gi|1173961734|gb|OQS07690.1|0.000e+066.74DEAD/DEAH box RNA helicase [Thraustotheca clavata][more]
gi|1214708435|gb|OWZ19719.1|0.000e+069.81DEAD/DEAH box RNA helicase [Phytophthora megakarya... [more]
gi|635371322|emb|CCI40477.1|0.000e+067.59unnamed protein product [Albugo candida][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1570rna1570Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications