rna157, rna157 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna157
Unique Name	rna157
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	618
Alignment location	CM002455.1:405830..407063 -

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Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100013g63.9790.mrna
Orig protein id	gnl\|cribi\|Naga_100013g63.9790
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:405830..407063 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100013g63	gene149	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna157	rna157-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30502.1	cds157	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:405830..407063-
coding sequence from alignment at CM002455.1:405830..407063-

mRNA sequence

>rna157 ID=rna157|Name=rna157|organism=Nannochloropsis gaditana|type=mRNA|length=618bp
ATGCTCCGTGGAGCCTACCACCACCACAGAGCCCTGCCTCGCAACCCTTC
CCCCCGGGGCCGGGACAGTCCGTCTTCCTCGCTCCCAGGAGGTCCCCGAC
GAGGCGGAGGAAGGCACGCGCTGTCGGAGTATCCAGTCGTACGTGCCCAG
CCCCCTTGTCAACAGATAGCCGTGGAAGACGCAGAGGGAGGCAAAGGAGA
GCAGGGCAATACCGGACATGACCGTGTGGATGATGAGGATTGCCTGGTAC
GTGACTGCCCGGCCCAAGGTACGTTGGACCATGGCGGGTACTTCTTCGGT
GGTGTTGAGCCAGTGGGTGAGGAGAAGGATGCTGATCAGGCTCTGGAGCG
CAAACTGGAGGGTGCCGGCCAAAGAGAGGAGGAAGAAGAAAAAGTAGTTC
CTGTGGCGGAAGGGGGAGGCGGGTCGAAAAGTGTAGATCAGAAAGGCGAA
CGAAGCACCCAGTCCCCGCTCACCCACATGCATCCCCGGCGCTTTCCTCT
GCCCTCAATGCAGGCGTACCGTGCACCGATGCAGGTGTTAAGCCATAGGC
AGTGGTGGTCGAGTCCGGGAACCGATTTTCGGCAGGAAGCACAGTACCGG
GAGTGCGCTTGTGTGTAA

protein sequence of rna157

>rna157-protein ID=rna157-protein|Name=rna157|organism=Nannochloropsis gaditana|type=polypeptide|length=227bp
MFIAQVSREGHCKSCPSPSSLPVVIPLLPQRTAFASSFLPCLLFNMKVAA
SCQLLVALWVFLFMSSGNAFVFRPQPLTRSSRTVLREGFDFMEMGSRFLN
ELLPWGDAKKGMWAGKRDAMVVKYMEKTGISKEQAEREVDEYLKDKDAYI
AKAPNSLVAPREGKHPGEGNKPRTGVDARERAVSYNLAFRRSAPAACINP
VSLKTDSSKDFILIAHFDGLKTGRRCL

mRNA from alignment at CM002455.1:405830..407063-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna157 ID=rna157|Name=rna157|organism=Nannochloropsis gaditana|type=mRNA|length=1234bp|location=Sequence derived from alignment at CM002455.1:405830..407063- (Nannochloropsis gaditana)
ATGTTTATTGCACAGGTGTCCCGTGAAGGCCATTGTAAATCTTGTCCCTC
ACCTTCATCCCTTCCTGTCGTTATCCCCCTGCTTCCTCAGAGAACCGCTT
TTGCTTCGTCGTTCTTGCCTTGTCTCCTTTTCAACATGAAGGTTGCTGCA
TCCTGCCAACTATTGGTTGCTCTTTGGGTCTTCTTGTTTATGAGCAGCGG
CAACGCATTTGTCTTTCGCCCTCAGGTAATGTAGCATGCTGAACAACATA
CTGTCAGGAGTGACGCCTTCAGAACGGTTGAACGGTTGAAGTCTAACATC
CATCAAGGATGAGTGACTGAGTAGCACGTCTTGCGAGCATTGACGGATTC
TTTTTAGACAGAAAACAAAGACACTTATTGTGAGCTATTTTGTGTGTCAT
AGCGCTCCCAATCATACACGGGGCTTGAAATATGAAGGACTTCATGATTC
TCTGTGATGAGGGAGTAGTAATTTGCATTCCGGTAACCATCCTCTCCTTC
CTGACCTACGAACCCTAGCCACTGACCCGCAGTTCTCGGACTGTTCTTCG
CGAAGGCTTCGACTTCATGGAAATGGGGTCTCGATTTTTGAACGAGCTAT
TGCCTTGGGGTGATGCGAAGAAAGGAATGTGGGCGGGAAAGCGGGATGCG
ATGGTAGTAAAGTATATGGAAAAGACAGGTGAGTCAAACGGAACGTACGG
CGACGACATAAGACGTCTTCAGAGGAAATGTTTTTTTTGGTGGCAGGGTT
TACTCTTCATGTCTGCTAAAATCTCGTTTATGATTGGTTTTGTGCACACG
AAGGTATTTCGAAAGAGCAGGCTGAGCGGGAGGTAGACGAATACTTGAAA
GACAAGGACGCCTATATCGCCAAAGCGCGTGCGGAAGAGGCTAAGCAGAA
GCAGAAGTGATGCCATGGCTTTGGTTTGAAGCCAACTCTCTGGTTGCTCC
GAGGGAGGGCAAGCACCCTGGTGAAGGAAATAAACCACGGACCGGCGTTG
ACGCCAGAGAGCGCGCTGTGTCATGTTTCTCATGATCTGTCCCGATAATA
CGCGCTTCATTTTTGTCGGAAGTGCATTTTAAATCCGTAACTCGGTGAAA
AAGACAATCTGGCGTTCAGACGGAGCGCCCCGGCAGCCTGCATTAATCCT
GTGTCGCTGAAAACTGACAGTTCTAAGGATTTTATTCTTATTGCTCATTT
TGACGGGCTGAAAACTGGGAGGAGATGTCTTTAA

Coding sequence (CDS) from alignment at CM002455.1:405830..407063-

>rna157 ID=rna157|Name=rna157|organism=Nannochloropsis gaditana|type=CDS|length=3420bp|location=Sequence derived from alignment at CM002455.1:405830..407063- (Nannochloropsis gaditana)
ACAATCTGGCGTTCAGACGGAGCGCCCCGGCAGCCTGCATTAATCCTGTG
TCGCTGAAAACTGACAGTTCTAAGGATTTTATTCTTATTGCTCATTTTGA
CGGGCTGAAAACTGGGAGGAGATGTCTTTAACCAACTCTCTGGTTGCTCC
GAGGGAGGGCAAGCACCCTGGTGAAGGAAATAAACCACGGACCGGCGTTG
ACGCCAGAGAGCGCGCTGTGTCATGTATTTCGAAAGAGCAGGCTGAGCGG
GAGGTAGACGAATACTTGAAAGACAAGGACGCCTATATCGCCAAAGCGCC
CACTGACCCGCAGTTCTCGGACTGTTCTTCGCGAAGGCTTCGACTTCATG
GAAATGGGGTCTCGATTTTTGAACGAGCTATTGCCTTGGGGTGATGCGAA
GAAAGGAATGTGGGCGGGAAAGCGGGATGCGATGGTAGTAAAGTATATGG
AAAAGACAGATGTTTATTGCACAGGTGTCCCGTGAAGGCCATTGTAAATC
TTGTCCCTCACCTTCATCCCTTCCTGTCGTTATCCCCCTGCTTCCTCAGA
GAACCGCTTTTGCTTCGTCGTTCTTGCCTTGTCTCCTTTTCAACATGAAG
GTTGCTGCATCCTGCCAACTATTGGTTGCTCTTTGGGTCTTCTTGTTTAT
GAGCAGCGGCAACGCATTTGTCTTTCGCCCTCAGACAATCTGGCGTTCAG
ACGGAGCGCCCCGGCAGCCTGCATTAATCCTGTGTCGCTGAAAACTGACA
GTTCTAAGGATTTTATTCTTATTGCTCATTTTGACGGGCTGAAAACTGGG
AGGAGATGTCTTTAACCAACTCTCTGGTTGCTCCGAGGGAGGGCAAGCAC
CCTGGTGAAGGAAATAAACCACGGACCGGCGTTGACGCCAGAGAGCGCGC
TGTGTCATGTATTTCGAAAGAGCAGGCTGAGCGGGAGGTAGACGAATACT
TGAAAGACAAGGACGCCTATATCGCCAAAGCGCCCACTGACCCGCAGTTC
TCGGACTGTTCTTCGCGAAGGCTTCGACTTCATGGAAATGGGGTCTCGAT
TTTTGAACGAGCTATTGCCTTGGGGTGATGCGAAGAAAGGAATGTGGGCG
GGAAAGCGGGATGCGATGGTAGTAAAGTATATGGAAAAGACAGATGTTTA
TTGCACAGGTGTCCCGTGAAGGCCATTGTAAATCTTGTCCCTCACCTTCA
TCCCTTCCTGTCGTTATCCCCCTGCTTCCTCAGAGAACCGCTTTTGCTTC
GTCGTTCTTGCCTTGTCTCCTTTTCAACATGAAGGTTGCTGCATCCTGCC
AACTATTGGTTGCTCTTTGGGTCTTCTTGTTTATGAGCAGCGGCAACGCA
TTTGTCTTTCGCCCTCAGACAATCTGGCGTTCAGACGGAGCGCCCCGGCA
GCCTGCATTAATCCTGTGTCGCTGAAAACTGACAGTTCTAAGGATTTTAT
TCTTATTGCTCATTTTGACGGGCTGAAAACTGGGAGGAGATGTCTTTAAC
CAACTCTCTGGTTGCTCCGAGGGAGGGCAAGCACCCTGGTGAAGGAAATA
AACCACGGACCGGCGTTGACGCCAGAGAGCGCGCTGTGTCATGTATTTCG
AAAGAGCAGGCTGAGCGGGAGGTAGACGAATACTTGAAAGACAAGGACGC
CTATATCGCCAAAGCGCCCACTGACCCGCAGTTCTCGGACTGTTCTTCGC
GAAGGCTTCGACTTCATGGAAATGGGGTCTCGATTTTTGAACGAGCTATT
GCCTTGGGGTGATGCGAAGAAAGGAATGTGGGCGGGAAAGCGGGATGCGA
TGGTAGTAAAGTATATGGAAAAGACAGATGTTTATTGCACAGGTGTCCCG
TGAAGGCCATTGTAAATCTTGTCCCTCACCTTCATCCCTTCCTGTCGTTA
TCCCCCTGCTTCCTCAGAGAACCGCTTTTGCTTCGTCGTTCTTGCCTTGT
CTCCTTTTCAACATGAAGGTTGCTGCATCCTGCCAACTATTGGTTGCTCT
TTGGGTCTTCTTGTTTATGAGCAGCGGCAACGCATTTGTCTTTCGCCCTC
AGACAATCTGGCGTTCAGACGGAGCGCCCCGGCAGCCTGCATTAATCCTG
TGTCGCTGAAAACTGACAGTTCTAAGGATTTTATTCTTATTGCTCATTTT
GACGGGCTGAAAACTGGGAGGAGATGTCTTTAACCAACTCTCTGGTTGCT
CCGAGGGAGGGCAAGCACCCTGGTGAAGGAAATAAACCACGGACCGGCGT
TGACGCCAGAGAGCGCGCTGTGTCATGTATTTCGAAAGAGCAGGCTGAGC
GGGAGGTAGACGAATACTTGAAAGACAAGGACGCCTATATCGCCAAAGCG
CCCACTGACCCGCAGTTCTCGGACTGTTCTTCGCGAAGGCTTCGACTTCA
TGGAAATGGGGTCTCGATTTTTGAACGAGCTATTGCCTTGGGGTGATGCG
AAGAAAGGAATGTGGGCGGGAAAGCGGGATGCGATGGTAGTAAAGTATAT
GGAAAAGACAGATGTTTATTGCACAGGTGTCCCGTGAAGGCCATTGTAAA
TCTTGTCCCTCACCTTCATCCCTTCCTGTCGTTATCCCCCTGCTTCCTCA
GAGAACCGCTTTTGCTTCGTCGTTCTTGCCTTGTCTCCTTTTCAACATGA
AGGTTGCTGCATCCTGCCAACTATTGGTTGCTCTTTGGGTCTTCTTGTTT
ATGAGCAGCGGCAACGCATTTGTCTTTCGCCCTCAGACAATCTGGCGTTC
AGACGGAGCGCCCCGGCAGCCTGCATTAATCCTGTGTCGCTGAAAACTGA
CAGTTCTAAGGATTTTATTCTTATTGCTCATTTTGACGGGCTGAAAACTG
GGAGGAGATGTCTTTAACCAACTCTCTGGTTGCTCCGAGGGAGGGCAAGC
ACCCTGGTGAAGGAAATAAACCACGGACCGGCGTTGACGCCAGAGAGCGC
GCTGTGTCATGTATTTCGAAAGAGCAGGCTGAGCGGGAGGTAGACGAATA
CTTGAAAGACAAGGACGCCTATATCGCCAAAGCGCCCACTGACCCGCAGT
TCTCGGACTGTTCTTCGCGAAGGCTTCGACTTCATGGAAATGGGGTCTCG
ATTTTTGAACGAGCTATTGCCTTGGGGTGATGCGAAGAAAGGAATGTGGG
CGGGAAAGCGGGATGCGATGGTAGTAAAGTATATGGAAAAGACAGATGTT
TATTGCACAGGTGTCCCGTGAAGGCCATTGTAAATCTTGTCCCTCACCTT
CATCCCTTCCTGTCGTTATCCCCCTGCTTCCTCAGAGAACCGCTTTTGCT
TCGTCGTTCTTGCCTTGTCTCCTTTTCAACATGAAGGTTGCTGCATCCTG
CCAACTATTGGTTGCTCTTTGGGTCTTCTTGTTTATGAGCAGCGGCAACG
CATTTGTCTTTCGCCCTCAG

Synonyms

Publications