rna1567, rna1567 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1567
Unique Name	rna1567
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1234
Alignment location	CM002457.1:949188..951144 -

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Properties


Property Name	Value
Product	protein of unknown function DUF862, eukaryotic
Orig transcript id	gnl\|cribi\|Naga_100007g6.6536.mrna
Orig protein id	gnl\|cribi\|Naga_100007g6.6536
Gbkey	mRNA
Note	encoded by transcript variant 2; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002457.1	supercontig	CM002457.1:949188..951144 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100007g6	gene1507	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1567	rna1567-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29209.1	cds1563	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002457.1:949188..951144-
coding sequence from alignment at CM002457.1:949188..951144-

mRNA sequence

>rna1567 ID=rna1567|Name=rna1567|organism=Nannochloropsis gaditana|type=mRNA|length=1234bp
CATCATACGAACCGCGTCATCGGTCTCGAGGGAGCACGCACAGAGGCCCA
AGAAATCGACCCTGCTGCTTTTCCCCCCGAATGGTAGGGGCCAGGGCGAC
CGTATCTCATTGAATAGATAGCGACTTTTTTTTTCCAAATTATAATGGTA
TCGTGGGAGCAGTAATGCCGGTTCTGCAGGCGATCAAAGCTAGGCATAAG
TGAGCGCGTCTGAAAGCCACTCGACGGCTATGGCGGCATCCTCTCGGCGC
GATGTGATTCTCAATGTCTACGAGCTGACGGATGAGCAGGGGACGGGCTC
ATGGATGCGACGAGTAGGGCTAGGGGCGTGGCATACTGGCGTGGAGGTTC
GTTTCAAGCTGGGGAAAATACCTGTAATGCTTACATCTTTGGGAACGGAT
GGCAGGAAACAGCTTTTTCTGTTTTGTGGAGCTGACGTCTCATGGTCATA
ATTTGTATTGAAACGAAGGTTGGCGGCGTAGAGTACACATTCGCCCAAAA
CGGAGTCTTTTTCCACGTTCCCAAGACCCCTCTGGTTGCGAGTGGCCAGG
TAGTAAGCTTGAAGGAGAGCATAGTCATGGGCGAGCATGTCGGAAGCGCC
AACGAGGTACATGGCATTATTAACAAACTGCGAGAAGAGTTTGCGGCCGG
TGCCTATCATGTGACGAGGAAAAATTGCAACCACTACAGCGACGCGCTCT
GTCAGAGACTGGTGGGGGCTTCCGTTCCCGCTTGGGTGAACCGCCCCGCG
CGCATTGGCTCTATCTTTTCTTTCGGTGGCAACAAGGACAAAGCGAAAGA
AAAGACTAGAACAGAAAAAGTTAGTGCACGCACAAAGGCAGAGAACGCCG
CGGCGAAAAAGAAGAAGGAGCTCACACAGGATCAGAAGAATCGACTTGCG
GCAATAAGACGGACCTCGTCGAGCTCATGAGCTCGTCATGACACAGACGC
TTGTGGATACTTGCACCATGTACAGAAGTAAAAGGGAGCGGGTGGGGTGA
AATATTGTGATTTTTCTACGGCTGTAGGTTGTCCTGGAAAAGCACGAAAG
GTAACGTAATACAATGCTACTGTAAGAGAAAATAATATCAGGTCGTTGGT
CCTGAAGCCTTTCAGGCTATTTTCCATGATGCTTTCTACCTAATGTTGAA
AATAGCAGAACCACCTTTCCATGTATAAATACCAATGTTGCATGCGGCAA
AGCCATCGGTCAGGCGAGAGCCATCCTACAGAAA

protein sequence of rna1567

>rna1567-protein ID=rna1567-protein|Name=rna1567|organism=Nannochloropsis gaditana|type=polypeptide|length=192bp
MAASSRRDVILNVYELTDEQGTGSWMRRVGLGAWHTGVEVGGVEYTFAQN
GVFFHVPKTPLVASGQVVSLKESIVMGEHVGSANEVHGIINKLREEFAAG
AYHVTRKNCNHYSDALCQRLVGASVPAWVNRPARIGSIFSFGGNKDKAKE
KTRTEKVSARTKAENAAAKKKKELTQDQKNRLAAIRRTSSSS

mRNA from alignment at CM002457.1:949188..951144-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1567 ID=rna1567|Name=rna1567|organism=Nannochloropsis gaditana|type=mRNA|length=1957bp|location=Sequence derived from alignment at CM002457.1:949188..951144- (Nannochloropsis gaditana)
CATCATACGAACCGCGTCATCGGTCTCGAGGGAGCACGCACAGAGGCCCA
AGAAATCGACCCTGCTGCTTTTCCCCCCGAATGGTAGGGGCCAGGGCGAC
CGTATCTCATTGAATAGATAGCGACTTTTTTTTTCCAAATTATAATGGTA
TCGTGGGAGCAGTAATGCCGGTTCTGCAGGCGATCAAAGGTATGTCTTAT
TCGGGGAGCCGTGCCCGCCGGCCTCGCGTTGCTGGTGGTTTTCTAGACTC
GGTCACTGGGCGGGAAAAACAGCTCCTGAGCGACATATTTTCATGATAGA
GAGAGAGCACTTCAGCCCATCGCATGGTCTGTTTCATTCGAATAGGGTCC
CGGGAAAAATGAAGGAATTGACAGTGGCTGCCTTGTTGAACACATGTAAA
GACTACGAAAAGTTCCCTACGTTCCATCTCTTCACGTTTGTTATGCTGTC
ACGTAGACAATTAATTCTTAAAGCTAGCATGGTCAGCAGACAGTGCTATA
TATGCGAGTCCATATTGTCAAGTCATGATATTACAGAGTAGTACGCGCGA
AATTGCATCCTACAGCATTGCTATTATACTTAGCCCCTATTAATATGAAT
GATCCCACTGGCGATACACTCACCTCCACCCTCGCCTCCCTCTTCGGATT
TTGGTAGCTAGGCATAAGTGAGCGCGTCTGAAAGCCACTCGACGGCTATG
GCGGCATCCTCTCGGCGCGATGTGATTCTCAATGTCTACGAGCTGACGGA
TGAGCAGGGGACGGGCTCATGGATGCGACGAGTAGGGCTAGGGGCGTGGC
ATACTGGCGTGGAGGTTCGTTTCAAGCTGGGGAAAATACCTGTAATGCTT
ACATCTTTGGGAACGGATGGCAGGAAACAGCTTTTTCTGTTTTGTGGAGC
TGACGTCTCATGGTCATAATTTGTATTGAAACGAAGGTTGGCGGCGTAGA
GTACACATTCGCCCAAAACGGAGTCTTTTTCCACGTTCCCAAGACCCCTC
TGGTTGCGAGTGGCCAGGTAGTAAGCTTGAAGGAGAGCATAGTCATGGGC
GAGCATGTCGGAAGCGCCAACGAGGTAAAGCGTTCATTAAATTTGAGAAG
GGTGGATACCTTGCGCACCCAGTCATTCCATTTTGTTAGCGACATGTCGA
CGGTTCTCATTGGAAATTAACATGTTGACAGGTACATGGCATTATTAACA
AACTGCGAGAAGAGTTTGCGGCCGGTGCCTATCATGTAAGTCTAAGGACG
CAGTCCGAGGTCGTGTTTGTGGGTGTATAGGTTGAGGATGATAGCAGAAA
AGAAAGGGAGAGAAGGCGGAGGGAATTCAAGAAGAAAAAAAAATGATTTG
ATGGTACTCTACGCCGTGACCTCTCCTCTGCAGGTGACGAGGAAAAATTG
CAACCACTACAGCGACGCGCTCTGTCAGAGACTGGTGGGGGCTTCCGTTC
CCGCTTGGGTGAACCGCCCCGCGCGCATTGGCTCTATCTTTTCTTTCGGT
GGCAACAAGGACAAAGCGAAAGAAAAGACTAGAACAGAAAAAGTTAGTGC
ACGCACAAAGGCAGAGAACGCCGCGGCGAAAAAGAAGAAGGAGCTCACAC
AGGATCAGAAGAATCGACTTGCGGCAATAAGACGGACCTCGTCGAGCTCA
TGAGCTCGTCATGACACAGACGCTTGTGGATACTTGCACCATGTACAGAA
GTAAAAGGGAGCGGGTGGGGTGAAATATTGTGATTTTTCTACGGCTGTAG
GTTGTCCTGGAAAAGCACGAAAGGTAACGTAATACAATGCTACTGTAAGA
GAAAATAATATCAGGTCGTTGGTCCTGAAGCCTTTCAGGCTATTTTCCAT
GATGCTTTCTACCTAATGTTGAAAATAGCAGAACCACCTTTCCATGTATA
AATACCAATGTTGCATGCGGCAAAGCCATCGGTCAGGCGAGAGCCATCCT
ACAGAAA

Coding sequence (CDS) from alignment at CM002457.1:949188..951144-

>rna1567 ID=rna1567|Name=rna1567|organism=Nannochloropsis gaditana|type=CDS|length=2316bp|location=Sequence derived from alignment at CM002457.1:949188..951144- (Nannochloropsis gaditana)
GTGACGAGGAAAAATTGCAACCACTACAGCGACGCGCTCTGTCAGAGACT
GGTGGGGGCTTCCGTTCCCGCTTGGGTGAACCGCCCCGCGCGCATTGGCT
CTATCTTTTCTTTCGGTGGCAACAAGGACAAAGCGAAAGAAAAGACTAGA
ACAGAAAAAGTTAGTGCACGCACAAAGGCAGAGAACGCCGCGGCGAAAAA
GAAGAAGGAGCTCACACAGGATCAGAAGAATCGACTTGCGGCAATAAGAC
GGACCTCGTCGAGCTCATGAGTACATGGCATTATTAACAAACTGCGAGAA
GAGTTTGCGGCCGGTGCCTATCATGTTGGCGGCGTAGAGTACACATTCGC
CCAAAACGGAGTCTTTTTCCACGTTCCCAAGACCCCTCTGGTTGCGAGTG
GCCAGGTAGTAAGCTTGAAGGAGAGCATAGTCATGGGCGAGCATGTCGGA
AGCGCCAACGAGATGGCGGCATCCTCTCGGCGCGATGTGATTCTCAATGT
CTACGAGCTGACGGATGAGCAGGGGACGGGCTCATGGATGCGACGAGTAG
GGCTAGGGGCGTGGCATACTGGCGTGGAGGTGACGAGGAAAAATTGCAAC
CACTACAGCGACGCGCTCTGTCAGAGACTGGTGGGGGCTTCCGTTCCCGC
TTGGGTGAACCGCCCCGCGCGCATTGGCTCTATCTTTTCTTTCGGTGGCA
ACAAGGACAAAGCGAAAGAAAAGACTAGAACAGAAAAAGTTAGTGCACGC
ACAAAGGCAGAGAACGCCGCGGCGAAAAAGAAGAAGGAGCTCACACAGGA
TCAGAAGAATCGACTTGCGGCAATAAGACGGACCTCGTCGAGCTCATGAG
TACATGGCATTATTAACAAACTGCGAGAAGAGTTTGCGGCCGGTGCCTAT
CATGTTGGCGGCGTAGAGTACACATTCGCCCAAAACGGAGTCTTTTTCCA
CGTTCCCAAGACCCCTCTGGTTGCGAGTGGCCAGGTAGTAAGCTTGAAGG
AGAGCATAGTCATGGGCGAGCATGTCGGAAGCGCCAACGAGATGGCGGCA
TCCTCTCGGCGCGATGTGATTCTCAATGTCTACGAGCTGACGGATGAGCA
GGGGACGGGCTCATGGATGCGACGAGTAGGGCTAGGGGCGTGGCATACTG
GCGTGGAGGTGACGAGGAAAAATTGCAACCACTACAGCGACGCGCTCTGT
CAGAGACTGGTGGGGGCTTCCGTTCCCGCTTGGGTGAACCGCCCCGCGCG
CATTGGCTCTATCTTTTCTTTCGGTGGCAACAAGGACAAAGCGAAAGAAA
AGACTAGAACAGAAAAAGTTAGTGCACGCACAAAGGCAGAGAACGCCGCG
GCGAAAAAGAAGAAGGAGCTCACACAGGATCAGAAGAATCGACTTGCGGC
AATAAGACGGACCTCGTCGAGCTCATGAGTACATGGCATTATTAACAAAC
TGCGAGAAGAGTTTGCGGCCGGTGCCTATCATGTTGGCGGCGTAGAGTAC
ACATTCGCCCAAAACGGAGTCTTTTTCCACGTTCCCAAGACCCCTCTGGT
TGCGAGTGGCCAGGTAGTAAGCTTGAAGGAGAGCATAGTCATGGGCGAGC
ATGTCGGAAGCGCCAACGAGATGGCGGCATCCTCTCGGCGCGATGTGATT
CTCAATGTCTACGAGCTGACGGATGAGCAGGGGACGGGCTCATGGATGCG
ACGAGTAGGGCTAGGGGCGTGGCATACTGGCGTGGAGGTGACGAGGAAAA
ATTGCAACCACTACAGCGACGCGCTCTGTCAGAGACTGGTGGGGGCTTCC
GTTCCCGCTTGGGTGAACCGCCCCGCGCGCATTGGCTCTATCTTTTCTTT
CGGTGGCAACAAGGACAAAGCGAAAGAAAAGACTAGAACAGAAAAAGTTA
GTGCACGCACAAAGGCAGAGAACGCCGCGGCGAAAAAGAAGAAGGAGCTC
ACACAGGATCAGAAGAATCGACTTGCGGCAATAAGACGGACCTCGTCGAG
CTCATGAGTACATGGCATTATTAACAAACTGCGAGAAGAGTTTGCGGCCG
GTGCCTATCATGTTGGCGGCGTAGAGTACACATTCGCCCAAAACGGAGTC
TTTTTCCACGTTCCCAAGACCCCTCTGGTTGCGAGTGGCCAGGTAGTAAG
CTTGAAGGAGAGCATAGTCATGGGCGAGCATGTCGGAAGCGCCAACGAGA
TGGCGGCATCCTCTCGGCGCGATGTGATTCTCAATGTCTACGAGCTGACG
GATGAGCAGGGGACGGGCTCATGGATGCGACGAGTAGGGCTAGGGGCGTG
GCATACTGGCGTGGAG

Synonyms

Publications