rna1566, rna1566 (mRNA) Nannochloropsis gaditana

Overview
Namerna1566
Unique Namerna1566
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1747
Alignment locationCM002457.1:949188..951144 -

Link to JBrowse

Properties
Property NameValue
Productprotein of unknown function DUF862, eukaryotic
Orig transcript idgnl|cribi|Naga_100007g6.6535.mrna
Orig protein idgnl|cribi|Naga_100007g6.6535
GbkeymRNA
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:949188..951144 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100007g6gene1507Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1566rna1566-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29208.1cds1562Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1566 ID=rna1566|Name=rna1566|organism=Nannochloropsis gaditana|type=mRNA|length=1747bp
CCAGCTTTGTCGCTCGCATCCAGTCTTGATCCATACGCCGGAGAGACTTT
GTTGGTCAAGCGCAGTCCGTTTCGGCACTTTTCTTTTTGTTTGTGTGCAC
TACATAGAGTGACAGAAATTGTCGTTTGTATGTCATCTTTCTTGTCATCA
AGAAGTCCGTAAGGATGAGCGCGCAGAAGTGTACGTGTCGACGACATCAG
GAGCGCTATAGACATTCCATCGAAAAACCTGTTAAACTAGCCTCTTTCAG
TAACTTCAGCATATGGCGTCCCACCCTTAATGGCCGGACAGTACGTGGCC
CGAATTTCTGCCCCTCTTCATGCCTGTGAGGAACAAGTGTAGGCATGTCC
CTGTCATCCTGACTTCCTCATTGCGATCAGGTAGAGGTGGTCTGTCAATG
AAGAGATCTTCAATATGACGCGAACAACGCGATCAAGGACAAGCTCCAAT
GCCGCTCCTTTTCAGAGACTCGGCCGTAAAGAAGCAAGTAAAGGCAATGT
GCTGTGCTTAAGCATGATCTACGCCAGAGAGGATGCAGTTCCAGAAAAGG
ATTTCGGTCAGGTGTGGCGCGATCGCTTGCGCCTTGTGCAGCTGGAGAGC
AACGGATGGGAAGTGTACAGCTGTGATCTATCCCACGATGAGTCCTTGGG
CGTAATGGGACGGCATCTGCAATCGAATTTCGACCACCGTCGATTTCAGG
AGGCCTTCACACGACGGTTTCCACATGGCTTGGAGATACGCCAGGTCATA
TTCGACTATTTCTACATCCCCGAGCACTGGGCCAGTCAGCGTTGGGGCTC
CGGCCGCCTCGTCACCGACACAATCCCCTTCCTGCGCCGCACCGCCAGGG
TCCGGGAGTTCTGGCTGCCCAATTGCAAGGTCATGCGGGAGCTTTTGGAG
GAGCACGAGGAGGTGCTGGTGTCGGAGGGTCTTGACTGGAGCCTGGTGCG
GGAACGGTGGAAAAACGTCCTGTACGTGGCCACGGAGCAAGTGGACGGGA
TCATGCAAAGGAGCTTGGCCGAGGTGAAGACAAATGCGAACCAGGTTGCT
GCCTACCTGGATGACCAGTACCCGTTTATAAAGATAAGCCCCATCGTCCT
CGCCAAGCCGCGTCGCTATCGCCAAGAAAAGGGGAGGGACCTCAAGGACA
ATCAAAAACGGAGCAAAGTCGTGGAGGGGGGATTGAAGGTAAGATACCAG
AAAGGAGCAGAGCGTAACATTCTCGCACCGAGGAATCATGGCTGTATATT
CGAGGAGGATGAGAACCCCGTCAGCCGTTAGGGATTGCCTTAAAGTCCGG
TAGTAGACCGCACTGTTTTCTGTAGGATGGCTCTCGCCTGACCGATGGCT
TTGCCGCATGCAACATTGGTATTTATACATGGAAAGGTGGTTCTGCTATT
TTCAACATTAGGTAGAAAGCATCATGGAAAATAGCCTGAAAGGCTTCAGG
ACCAACGACCTGATATTATTTTCTCTTACAGTAGCATTGTATTACGTTAC
CTTTCGTGCTTTTCCAGGACAACCTACAGCCGTAGAAAAATCACAATATT
TCACCCCACCCGCTCCCTTTTACTTCTGTACATGGTGCAAGTATCCACAA
GCGTCTGTGTCATGACGAGCTCATGAGCTCGACGAGGTCCGTCTTATTGC
CGCAAGTCGATTCTTCTGATCCTGTGTGAGCTCCTTCTTCTTTTTCGCCG
CGGCGTTCTCTGCCTTTGTGCGTGCACTAACTTTTTCTGTTCTAGTC
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protein sequence of rna1566

>rna1566-protein ID=rna1566-protein|Name=rna1566|organism=Nannochloropsis gaditana|type=polypeptide|length=162bp
MVIICIETKVGGVEYTFAQNGVFFHVPKTPLVASGQVVSLKESIVMGEHV
GSANEVHGIINKLREEFAAGAYHVTRKNCNHYSDALCQRLVGASVPAWVN
RPARIGSIFSFGGNKDKAKEKTRTEKVSARTKAENAAAKKKKELTQDQKN
RLAAIRRTSSSS
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mRNA from alignment at CM002457.1:949188..951144-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1566 ID=rna1566|Name=rna1566|organism=Nannochloropsis gaditana|type=mRNA|length=1957bp|location=Sequence derived from alignment at CM002457.1:949188..951144- (Nannochloropsis gaditana)
CATCATACGAACCGCGTCATCGGTCTCGAGGGAGCACGCACAGAGGCCCA
AGAAATCGACCCTGCTGCTTTTCCCCCCGAATGGTAGGGGCCAGGGCGAC
CGTATCTCATTGAATAGATAGCGACTTTTTTTTTCCAAATTATAATGGTA
TCGTGGGAGCAGTAATGCCGGTTCTGCAGGCGATCAAAGGTATGTCTTAT
TCGGGGAGCCGTGCCCGCCGGCCTCGCGTTGCTGGTGGTTTTCTAGACTC
GGTCACTGGGCGGGAAAAACAGCTCCTGAGCGACATATTTTCATGATAGA
GAGAGAGCACTTCAGCCCATCGCATGGTCTGTTTCATTCGAATAGGGTCC
CGGGAAAAATGAAGGAATTGACAGTGGCTGCCTTGTTGAACACATGTAAA
GACTACGAAAAGTTCCCTACGTTCCATCTCTTCACGTTTGTTATGCTGTC
ACGTAGACAATTAATTCTTAAAGCTAGCATGGTCAGCAGACAGTGCTATA
TATGCGAGTCCATATTGTCAAGTCATGATATTACAGAGTAGTACGCGCGA
AATTGCATCCTACAGCATTGCTATTATACTTAGCCCCTATTAATATGAAT
GATCCCACTGGCGATACACTCACCTCCACCCTCGCCTCCCTCTTCGGATT
TTGGTAGCTAGGCATAAGTGAGCGCGTCTGAAAGCCACTCGACGGCTATG
GCGGCATCCTCTCGGCGCGATGTGATTCTCAATGTCTACGAGCTGACGGA
TGAGCAGGGGACGGGCTCATGGATGCGACGAGTAGGGCTAGGGGCGTGGC
ATACTGGCGTGGAGGTTCGTTTCAAGCTGGGGAAAATACCTGTAATGCTT
ACATCTTTGGGAACGGATGGCAGGAAACAGCTTTTTCTGTTTTGTGGAGC
TGACGTCTCATGGTCATAATTTGTATTGAAACGAAGGTTGGCGGCGTAGA
GTACACATTCGCCCAAAACGGAGTCTTTTTCCACGTTCCCAAGACCCCTC
TGGTTGCGAGTGGCCAGGTAGTAAGCTTGAAGGAGAGCATAGTCATGGGC
GAGCATGTCGGAAGCGCCAACGAGGTAAAGCGTTCATTAAATTTGAGAAG
GGTGGATACCTTGCGCACCCAGTCATTCCATTTTGTTAGCGACATGTCGA
CGGTTCTCATTGGAAATTAACATGTTGACAGGTACATGGCATTATTAACA
AACTGCGAGAAGAGTTTGCGGCCGGTGCCTATCATGTAAGTCTAAGGACG
CAGTCCGAGGTCGTGTTTGTGGGTGTATAGGTTGAGGATGATAGCAGAAA
AGAAAGGGAGAGAAGGCGGAGGGAATTCAAGAAGAAAAAAAAATGATTTG
ATGGTACTCTACGCCGTGACCTCTCCTCTGCAGGTGACGAGGAAAAATTG
CAACCACTACAGCGACGCGCTCTGTCAGAGACTGGTGGGGGCTTCCGTTC
CCGCTTGGGTGAACCGCCCCGCGCGCATTGGCTCTATCTTTTCTTTCGGT
GGCAACAAGGACAAAGCGAAAGAAAAGACTAGAACAGAAAAAGTTAGTGC
ACGCACAAAGGCAGAGAACGCCGCGGCGAAAAAGAAGAAGGAGCTCACAC
AGGATCAGAAGAATCGACTTGCGGCAATAAGACGGACCTCGTCGAGCTCA
TGAGCTCGTCATGACACAGACGCTTGTGGATACTTGCACCATGTACAGAA
GTAAAAGGGAGCGGGTGGGGTGAAATATTGTGATTTTTCTACGGCTGTAG
GTTGTCCTGGAAAAGCACGAAAGGTAACGTAATACAATGCTACTGTAAGA
GAAAATAATATCAGGTCGTTGGTCCTGAAGCCTTTCAGGCTATTTTCCAT
GATGCTTTCTACCTAATGTTGAAAATAGCAGAACCACCTTTCCATGTATA
AATACCAATGTTGCATGCGGCAAAGCCATCGGTCAGGCGAGAGCCATCCT
ACAGAAA
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Coding sequence (CDS) from alignment at CM002457.1:949188..951144-

>rna1566 ID=rna1566|Name=rna1566|organism=Nannochloropsis gaditana|type=CDS|length=1467bp|location=Sequence derived from alignment at CM002457.1:949188..951144- (Nannochloropsis gaditana)
GTGACGAGGAAAAATTGCAACCACTACAGCGACGCGCTCTGTCAGAGACT
GGTGGGGGCTTCCGTTCCCGCTTGGGTGAACCGCCCCGCGCGCATTGGCT
CTATCTTTTCTTTCGGTGGCAACAAGGACAAAGCGAAAGAAAAGACTAGA
ACAGAAAAAGTTAGTGCACGCACAAAGGCAGAGAACGCCGCGGCGAAAAA
GAAGAAGGAGCTCACACAGGATCAGAAGAATCGACTTGCGGCAATAAGAC
GGACCTCGTCGAGCTCATGAGTACATGGCATTATTAACAAACTGCGAGAA
GAGTTTGCGGCCGGTGCCTATCATATGGTCATAATTTGTATTGAAACGAA
GGTTGGCGGCGTAGAGTACACATTCGCCCAAAACGGAGTCTTTTTCCACG
TTCCCAAGACCCCTCTGGTTGCGAGTGGCCAGGTAGTAAGCTTGAAGGAG
AGCATAGTCATGGGCGAGCATGTCGGAAGCGCCAACGAGGTGACGAGGAA
AAATTGCAACCACTACAGCGACGCGCTCTGTCAGAGACTGGTGGGGGCTT
CCGTTCCCGCTTGGGTGAACCGCCCCGCGCGCATTGGCTCTATCTTTTCT
TTCGGTGGCAACAAGGACAAAGCGAAAGAAAAGACTAGAACAGAAAAAGT
TAGTGCACGCACAAAGGCAGAGAACGCCGCGGCGAAAAAGAAGAAGGAGC
TCACACAGGATCAGAAGAATCGACTTGCGGCAATAAGACGGACCTCGTCG
AGCTCATGAGTACATGGCATTATTAACAAACTGCGAGAAGAGTTTGCGGC
CGGTGCCTATCATATGGTCATAATTTGTATTGAAACGAAGGTTGGCGGCG
TAGAGTACACATTCGCCCAAAACGGAGTCTTTTTCCACGTTCCCAAGACC
CCTCTGGTTGCGAGTGGCCAGGTAGTAAGCTTGAAGGAGAGCATAGTCAT
GGGCGAGCATGTCGGAAGCGCCAACGAGGTGACGAGGAAAAATTGCAACC
ACTACAGCGACGCGCTCTGTCAGAGACTGGTGGGGGCTTCCGTTCCCGCT
TGGGTGAACCGCCCCGCGCGCATTGGCTCTATCTTTTCTTTCGGTGGCAA
CAAGGACAAAGCGAAAGAAAAGACTAGAACAGAAAAAGTTAGTGCACGCA
CAAAGGCAGAGAACGCCGCGGCGAAAAAGAAGAAGGAGCTCACACAGGAT
CAGAAGAATCGACTTGCGGCAATAAGACGGACCTCGTCGAGCTCATGAGT
ACATGGCATTATTAACAAACTGCGAGAAGAGTTTGCGGCCGGTGCCTATC
ATATGGTCATAATTTGTATTGAAACGAAGGTTGGCGGCGTAGAGTACACA
TTCGCCCAAAACGGAGTCTTTTTCCACGTTCCCAAGACCCCTCTGGTTGC
GAGTGGCCAGGTAGTAAGCTTGAAGGAGAGCATAGTCATGGGCGAGCATG
TCGGAAGCGCCAACGAG
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Synonyms
Publications