EWM29208.1, cds1562 (CDS) Nannochloropsis gaditana

Overview
NameEWM29208.1
Unique Namecds1562
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:950071..950235 -
Alignment locationCM002457.1:949910..949963 -
Alignment locationCM002457.1:949492..949761 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM29208.1
Productprotein of unknown function DUF862, eukaryotic
Orig transcript idgnl|cribi|Naga_100007g6.6535.mrna
GbkeyCDS
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:950071..950235 -
CM002457.1supercontigCM002457.1:949910..949963 -
CM002457.1supercontigCM002457.1:949492..949761 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR008580PPPDE_dom
Homology
BLAST of EWM29208.1 vs. NCBI_GenBank
Match: gi|585111728|gb|EWM29208.1| (protein of unknown function DUF862, eukaryotic [Nannochloropsis gaditana])

HSP 1 Score: 334.724 bits (857), Expect = 3.027e-116
Identity = 162/162 (100.00%), Postives = 162/162 (100.00%), Query Frame = 0
Query:    1 MVIICIETKVGGVEYTFAQNGVFFHVPKTPLVASGQVVSLKESIVMGEHVGSANEVHGIINKLREEFAAGAYHVTRKNCNHYSDALCQRLVGASVPAWVNRPARIGSIFSFGGNKDKAKEKTRTEKVSARTKAENAAAKKKKELTQDQKNRLAAIRRTSSSS 162
            MVIICIETKVGGVEYTFAQNGVFFHVPKTPLVASGQVVSLKESIVMGEHVGSANEVHGIINKLREEFAAGAYHVTRKNCNHYSDALCQRLVGASVPAWVNRPARIGSIFSFGGNKDKAKEKTRTEKVSARTKAENAAAKKKKELTQDQKNRLAAIRRTSSSS
Sbjct:    1 MVIICIETKVGGVEYTFAQNGVFFHVPKTPLVASGQVVSLKESIVMGEHVGSANEVHGIINKLREEFAAGAYHVTRKNCNHYSDALCQRLVGASVPAWVNRPARIGSIFSFGGNKDKAKEKTRTEKVSARTKAENAAAKKKKELTQDQKNRLAAIRRTSSSS 162          
BLAST of EWM29208.1 vs. NCBI_GenBank
Match: gi|553193628|ref|XP_005855809.1| (hypothetical protein NGA_0588500 [Nannochloropsis gaditana CCMP526] >gi|422293256|gb|EKU20556.1| hypothetical protein NGA_0588500 [Nannochloropsis gaditana CCMP526] >gi|585111729|gb|EWM29209.1| protein of unknown function DUF862, eukaryotic [Nannochloropsis gaditana])

HSP 1 Score: 316.235 bits (809), Expect = 1.686e-108
Identity = 153/154 (99.35%), Postives = 154/154 (100.00%), Query Frame = 0
Query:    9 KVGGVEYTFAQNGVFFHVPKTPLVASGQVVSLKESIVMGEHVGSANEVHGIINKLREEFAAGAYHVTRKNCNHYSDALCQRLVGASVPAWVNRPARIGSIFSFGGNKDKAKEKTRTEKVSARTKAENAAAKKKKELTQDQKNRLAAIRRTSSSS 162
            +VGGVEYTFAQNGVFFHVPKTPLVASGQVVSLKESIVMGEHVGSANEVHGIINKLREEFAAGAYHVTRKNCNHYSDALCQRLVGASVPAWVNRPARIGSIFSFGGNKDKAKEKTRTEKVSARTKAENAAAKKKKELTQDQKNRLAAIRRTSSSS
Sbjct:   39 EVGGVEYTFAQNGVFFHVPKTPLVASGQVVSLKESIVMGEHVGSANEVHGIINKLREEFAAGAYHVTRKNCNHYSDALCQRLVGASVPAWVNRPARIGSIFSFGGNKDKAKEKTRTEKVSARTKAENAAAKKKKELTQDQKNRLAAIRRTSSSS 192          
BLAST of EWM29208.1 vs. NCBI_GenBank
Match: gi|299116898|emb|CBN75008.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 101.679 bits (252), Expect = 6.335e-24
Identity = 58/156 (37.18%), Postives = 87/156 (55.77%), Query Frame = 0
Query:    9 KVGGVEYTFAQNGVFFHVPKTPLVASGQVVSLKESIVMGEHVGSANEVHGIINKLREE-FAAGAYHVTRKNCNHYSDALCQRLVGASVPAWVNRPARIGSIFSFGGNKDKA--KEKTRTEKVSARTKAENAAAKKKKELTQDQKNRLAAIRRTSSS 161
            ++GGVEYTF++ GV  H P+     +G  VS K + V+G+ +G+  +V  I+N L+ E FA G Y V R NCNH+ D L   L G  +P WVNR A I +    G +K +    +K      ++   A    ++ +KELTQ Q++ L+ +R   SS
Sbjct:   35 EIGGVEYTFSEAGVAQHPPRQ---IAGDGVSFKTTEVLGDFIGTMPDVRRILNGLKAEGFAEGEYDVIRNNCNHFCDELAFALTGKRIPPWVNRAATIATWAGLGESKKEGANDKKGGAGTAASSATASAPPSRDRKELTQKQRDLLSKMRTNKSS 187          
BLAST of EWM29208.1 vs. NCBI_GenBank
Match: gi|813225908|ref|XP_012212031.1| (hypothetical protein SPRG_17305 [Saprolegnia parasitica CBS 223.65] >gi|641521779|gb|KDO17263.1| hypothetical protein SPRG_17305 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 85.5001 bits (210), Expect = 1.175e-17
Identity = 59/170 (34.71%), Postives = 84/170 (49.41%), Query Frame = 0
Query:    9 KVGGVEYTFAQN-GVFFHVPKTPLVASGQVVSLKESIVMGEHVGSANEVHGIINKLREEFAAGAYHVTRKNCNHYSDALCQRLVGASVPAWVNRPARIGSIFS------FGGNKDKAKEKTRT--------------EKVSARTKAENAAAKKKKELTQDQKNRLAAIRR 157
             + G EY+FA   G+F   PK    A G V   +ESI MG   GS+N+   ++++LR EF    Y++  KNCN +S+ LC RLVG  +PA+VNR A +GS  S        G      + T T                +S R  A +    +  E+ + +K RLAA+RR
Sbjct:   36 DIAGDEYSFAGGAGIFTCRPKQ---ADGAV--FRESIPMGYFEGSSNDARQVLDELRSEFQGHQYNLLTKNCNTFSNELCLRLVGVPIPAYVNRMAYLGSFLSCLLPRELTGQAPVEADSTPTAANNPRASYTSFGGSGISLRGTAPSTDTDEDMEVRR-EKRRLAAMRR 199          
BLAST of EWM29208.1 vs. NCBI_GenBank
Match: gi|813134393|ref|XP_012198138.1| (hypothetical protein SPRG_04142 [Saprolegnia parasitica CBS 223.65] >gi|641537091|gb|KDO30954.1| hypothetical protein SPRG_04142 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 84.7297 bits (208), Expect = 2.268e-17
Identity = 58/170 (34.12%), Postives = 84/170 (49.41%), Query Frame = 0
Query:    9 KVGGVEYTFAQN-GVFFHVPKTPLVASGQVVSLKESIVMGEHVGSANEVHGIINKLREEFAAGAYHVTRKNCNHYSDALCQRLVGASVPAWVNRPARIGSIFS------FGGNKDKAKEKTRT--------------EKVSARTKAENAAAKKKKELTQDQKNRLAAIRR 157
             + G EY+FA   G+F   PK    A G V   +ESI MG   GS+N+   ++++LR EF    Y++  KNCN +S+ LC RL+G  +PA+VNR A +GS  S        G      + T T                +S R  A +    +  E+ + +K RLAA+RR
Sbjct:   36 DIAGDEYSFAGGAGIFTCRPKQ---ADGAV--FRESIPMGYFEGSSNDARQVLDELRSEFQGHQYNLLTKNCNTFSNELCLRLLGVPIPAYVNRMAYLGSFLSCLLPRELTGQAPVEADSTPTTANTPRASYTSFGGSGISLRGTAPSTDTDEDMEVRR-EKRRLAAMRR 199          
BLAST of EWM29208.1 vs. NCBI_GenBank
Match: gi|669140320|ref|XP_008605728.1| (hypothetical protein SDRG_01949 [Saprolegnia diclina VS20] >gi|530742642|gb|EQC40884.1| hypothetical protein SDRG_01949 [Saprolegnia diclina VS20])

HSP 1 Score: 83.5741 bits (205), Expect = 5.823e-17
Identity = 44/103 (42.72%), Postives = 62/103 (60.19%), Query Frame = 0
Query:    9 KVGGVEYTFAQN-GVFFHVPKTPLVASGQVVSLKESIVMGEHVGSANEVHGIINKLREEFAAGAYHVTRKNCNHYSDALCQRLVGASVPAWVNRPARIGSIFS 110
             + G EY+FA   G+F   PK    A G V   +ESI MG   GS+N+   ++++LR EF    Y++  KNCN +S+ LC RL+G  +PA+VNR A +GS  S
Sbjct:   36 DIAGDEYSFAGGAGIFTCRPKQ---ADGAV--FRESIPMGYFEGSSNDARQVLDELRSEFQGHQYNLLTKNCNTFSNELCLRLLGVPIPAYVNRMAYLGSFLS 133          
BLAST of EWM29208.1 vs. NCBI_GenBank
Match: gi|676386253|ref|XP_009036405.1| (hypothetical protein AURANDRAFT_15620, partial [Aureococcus anophagefferens] >gi|323453436|gb|EGB09308.1| hypothetical protein AURANDRAFT_15620, partial [Aureococcus anophagefferens])

HSP 1 Score: 81.2629 bits (199), Expect = 7.213e-17
Identity = 40/98 (40.82%), Postives = 57/98 (58.16%), Query Frame = 0
Query:    9 KVGGVEYTFAQNGVFFHVPKTPLVASGQVVSLKESIVMGEHVGSANEVHGIINKLREEFAAGAYHVTRKNCNHYSDALCQRLVGASVPAWVNRPARIG 106
            ++ G EY+F   GVF   P+     +     L ES+ +G HVGS N+ +G++N LR  F  G+Y +T +NCNH+SDA  + L    +PA VNR A  G
Sbjct:   32 EINGSEYSFNDGGVFKAPPQACSRGAAPQCVLVESLHLGAHVGSVNDFNGVLNDLRRAFPPGSYALTSRNCNHFSDAFVRALGLGGIPARVNRAASYG 129          
BLAST of EWM29208.1 vs. NCBI_GenBank
Match: gi|902145781|gb|KNA05002.1| (hypothetical protein SOVF_194450 [Spinacia oleracea])

HSP 1 Score: 83.5741 bits (205), Expect = 8.828e-17
Identity = 54/158 (34.18%), Postives = 80/158 (50.63%), Query Frame = 0
Query:    9 KVGGVEYTF-----AQNGVFFHVPKTPLVASGQVVSLKESIVMGEHVGSANEVHGIINKLREEFAAGAYHVTRKNCNHYSDALCQRLVGASVPAWVNRPARIGSIFSFGGNKDKAKEKTRTEKVSARTKAENAAAKKKKELTQDQKNRLAAIRRTSSS 161
            +V G+EY F     A  GVF   PK      G   + ++SI++G     A EV  ++ KL +E+    YH+  KNCNH+ + LC RL G  +P+WVNR AR+G +         A ++ +   + A +KA +   KKK    + Q NR      TSS+
Sbjct:   44 QVHGIEYAFGAHDHATTGVFEVEPKQ---CPG--FTFRKSILIGRTDLGAKEVRALMEKLSKEYFGNTYHLISKNCNHFCNDLCIRLTGRPIPSWVNRLARLGLLCK--CVLPAALDEAKVRHIRAESKARSEVDKKK---LRSQSNRFEPSNSTSST 191          
BLAST of EWM29208.1 vs. NCBI_GenBank
Match: gi|551634367|ref|XP_005820028.1| (hypothetical protein GUITHDRAFT_81819 [Guillardia theta CCMP2712] >gi|428164004|gb|EKX33048.1| hypothetical protein GUITHDRAFT_81819 [Guillardia theta CCMP2712])

HSP 1 Score: 80.4925 bits (197), Expect = 2.276e-16
Identity = 47/109 (43.12%), Postives = 60/109 (55.05%), Query Frame = 0
Query:    9 KVGGVEYTFAQN-----GVFFHVPKTPLVASGQVVS--LKESIVMGEHVGSANEVHGIINKLREEFAAGAYHVTRKNCNHYSDALCQRLVGASVPAWVNRPARIGSIFS 110
            +V  VE+TFA N     G+  H PK       QV S   + SI MGE   S++E+   +  L + F    YH   KNCNH+SDA CQ LVG  +P W+NR A +GS FS
Sbjct:   32 EVNSVEHTFAGNESSSSGIVRHPPK-------QVPSARFRISIDMGETNKSSSEIEAELAFLGQHFQGNTYHPVMKNCNHFSDAFCQALVGKRIPGWINRLANMGSCFS 133          
BLAST of EWM29208.1 vs. NCBI_GenBank
Match: gi|698776804|ref|XP_009821446.1| (hypothetical protein H257_00444 [Aphanomyces astaci] >gi|574123571|gb|ETV89046.1| hypothetical protein H257_00444 [Aphanomyces astaci])

HSP 1 Score: 82.4185 bits (202), Expect = 2.306e-16
Identity = 43/103 (41.75%), Postives = 60/103 (58.25%), Query Frame = 0
Query:    9 KVGGVEYTFAQN-GVFFHVPKTPLVASGQVVSLKESIVMGEHVGSANEVHGIINKLREEFAAGAYHVTRKNCNHYSDALCQRLVGASVPAWVNRPARIGSIFS 110
            +VGGVEY+FA   G+F   PK     S Q    +ESI MG   G+ ++   I++ +R EF    Y++  KNCN +S+  C RLVG  +P ++NR A  GS FS
Sbjct:   41 EVGGVEYSFAGGAGIFTLAPK-----SAQGAVFRESIDMGSFEGTYHDAKRILDDMRSEFHGSQYNLLTKNCNTFSNEACLRLVGQPIPPFINRIAYFGSCFS 138          
The following BLAST results are available for this feature:
BLAST of EWM29208.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111728|gb|EWM29208.1|3.027e-116100.00protein of unknown function DUF862, eukaryotic [Na... [more]
gi|553193628|ref|XP_005855809.1|1.686e-10899.35hypothetical protein NGA_0588500 [Nannochloropsis ... [more]
gi|299116898|emb|CBN75008.1|6.335e-2437.18conserved unknown protein [Ectocarpus siliculosus][more]
gi|813225908|ref|XP_012212031.1|1.175e-1734.71hypothetical protein SPRG_17305 [Saprolegnia paras... [more]
gi|813134393|ref|XP_012198138.1|2.268e-1734.12hypothetical protein SPRG_04142 [Saprolegnia paras... [more]
gi|669140320|ref|XP_008605728.1|5.823e-1742.72hypothetical protein SDRG_01949 [Saprolegnia dicli... [more]
gi|676386253|ref|XP_009036405.1|7.213e-1740.82hypothetical protein AURANDRAFT_15620, partial [Au... [more]
gi|902145781|gb|KNA05002.1|8.828e-1734.18hypothetical protein SOVF_194450 [Spinacia olerace... [more]
gi|551634367|ref|XP_005820028.1|2.276e-1643.12hypothetical protein GUITHDRAFT_81819 [Guillardia ... [more]
gi|698776804|ref|XP_009821446.1|2.306e-1641.75hypothetical protein H257_00444 [Aphanomyces astac... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1566rna1566Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications