rna1561, rna1561 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1561
Unique Name	rna1561
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1079
Alignment location	CM002457.1:933019..935596 -

Link to JBrowse

Properties


Property Name	Value
Product	atp synthase mitochondrial f1 complex assembly factor 2
Orig transcript id	gnl\|cribi\|Naga_100007g12.6517.mrna
Orig protein id	gnl\|cribi\|Naga_100007g12.6517
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002457.1	supercontig	CM002457.1:933019..935596 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100007g12	gene1502	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1561	rna1561-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29190.1	cds1557	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002457.1:933019..935596-
coding sequence from alignment at CM002457.1:933019..935596-

mRNA sequence

>rna1561 ID=rna1561|Name=rna1561|organism=Nannochloropsis gaditana|type=mRNA|length=1079bp
TCACGGGTCTCACGAGTCCGTCCAACTAGCAACGTCACTGTTTTCTCGCG
CGCAGAGAGGCAGACCCTCTTTTCGTGAGCAGGCACATTGCAGAGGCTCG
TAACAAAAGCATTACGGCATTACATGCCATCAAACTCCTCCAGATCATGA
ACATTAAGTTGAATGATAGATACATGTTATTTTCATCTATTAACGAGAAT
TTTGTGACGTTCGACCGAACACAATACGCGGTACCGCGTTCAAGGATCTC
CCCGCTACCACTAAACAAAGATACATACGTTTGAAACAGTTTTTGTGTCG
AGCCTTTCACGGCTCTATCTATCCTTCGATCATAGTTATAAAAATGATTT
CATTTTATTATGAGATACATGTCTTTTGACGACTGGGCTCATATTCCTGG
AAACGTATGGCGGGGAAGTGAGTCGGTTCACCTCCTCATCCTTATGCTCC
CTCCTTACATTAAACCCTGCAGTCGAGCATGGCTAAATCTGCTAGGTCTA
AGAGCCGCAAGCACTGGGCATCAGAGCGTAGGCGGACGCTGGGTGTACCC
GTGGAGACTAAACAACTGATGGAGCAGTCCCAGCGCTTGGCGGCAAACCT
ATCGAAACAGACATCACAGCCCTCAATTATGAAACTCAAATCTGTTTTCA
AGCGCCCTGGGAGTAATTCTTATGCCATGTCCGTGCAGCGACGCTTGGCC
ATAAGTCGTAAGCGCAAAAGCGGCACCGAAGGTAAGCACAAGGCGTCCGC
AGTGGAAAGAGAAAGTGAAGGGGAGATGGAGACTGTTGAGAGCGCGGGCG
CCGTGTCTGAGGATCCAGTGGAGGAAGTGGATGGCATGGAGGTGGTACCC
GGAAAAAGGCCCACTGGCAAAGCGCGAATCGTTTCACGCTTCAAGAAATC
GGGACAGGCGTTCAGTGCTAAGAAGCAAAAACGCGTGAAGTCCTGATACA
GGAGATGGAAATGTGTAAAAAAATAAAGGCTTTGCACTGGAGGCTGACCC
TTTGCATTTTAAGTGCGTCTGTAACGAAAGGAAAAGCAAAAGATCACTAC
CTGGGTAGTAGTCAAGAGAAACATTGTCG

protein sequence of rna1561

>rna1561-protein ID=rna1561-protein|Name=rna1561|organism=Nannochloropsis gaditana|type=polypeptide|length=418bp
MSTVPRASLRFTRTLRGPGQRQIRGRNSTPRSQSRHALTYHSSLTAGIAS
WGPVVRHAASLAPLACNGLPRSSACRCSFSSTSTQDVPPLPHMGGRPSDE
EMAAEDAAAAAEMEESHMKDGLAIKMATSSFTGRRRFYKTVGVRPSLDPS
GRQVHHYEVTLDGYPLKTPGTEKAYRLPTEGLALAVALEWDQQVTYKGVE
PTYMPLTGIATIALDEIVFSRHSTIDRCLRYLATDTVCYCFPEEEDDHKL
LRRQQKTWEPLLGWLRDEFGVHITKPAHMLDVCHNSPETLQKVRIMLQEM
DPFTLAAFLSLVLDLKSVITALALVFRHVTVEEACQASALEEAHQKAAWG
SVDLYHELEETVLYTQTAAASSFLWLLHEEEAGDSKELGKNAGVMPHVEL
KARVKARLKKEFPDSTPE

mRNA from alignment at CM002457.1:933019..935596-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1561 ID=rna1561|Name=rna1561|organism=Nannochloropsis gaditana|type=mRNA|length=2578bp|location=Sequence derived from alignment at CM002457.1:933019..935596- (Nannochloropsis gaditana)
ACCTGGGTTTGACGAGGTACAAGGAAATGCCGAAGGAAATTAGAAGACTC
GATTGACACGATGTGGATTTTTAGAGCTGAATCAAGGTGCCAATGTCCCG
TTAGTATGACTGCCGTCGATTCGGACGTCGTCTGGGAGAGCAGCGGCAGG
CGGCGAGCGAGCGAGCAAAAAGAGCCCTCACAAGCTTTATGACATCTTGT
GCCCATTTGGCATGGCTGCATGTATGTCATGCATCTTCATGACGTAGCTC
AGGCCGGACATGGTGATGTGTCGTCCGCGTTGATTTGCGCCAAGATATCT
TTTCCTCCAGAGCACTTTCTCTGCTCGGAGGCATGTGCTGCAGCCCCCAG
CATTGTCCTCACGCTCCGAGGGCAAAACGCCTGACTCGGACTGGGGAAGG
GTAAGACCGTAAGGATATCTTTGCACTGGCAATTGGACAAGAGGCTAGGG
GCTTGATCGGTCTGGCCTTGTCAGTGTCTGACCAGAAGCGTGCCTCTAAT
TGTAATATGCTATAGCCTTCTCCTATCTAACCAACCTAAAAATGGTCAAA
TCTCATATTCATTGCGTGTTTCTGTCTGGGGCGATGTAGTCCTTTAAGCA
TCGTTATATGAGCCGTATGCACTTGTCGGAAGCAGTCGGGGGAAAAAAGT
TGTGCAGACCGACCTGTCAGAGCCATATTGCCTGTATACAGGGAATTTCA
TCTTACCCTTCGTCCTCCCCATCGTATAACCTTCCAAAGGGATGTCGACC
GTCCCCAGGGCAAGCCTTCGATTCACGCGGACACTGCGCGGGCCTGGGCA
GCGTCAGATCAGGGGCCGCAACTCGACCCCGCGGTCTCAATCTCGGCACG
CGCTTACGTACCATTCATCTTTGACTGCCGGCATCGCCTCCTGGGGCCCT
GTCGTAAGGCACGCTGCCTCGCTGGCACCTTTGGCATGCAACGGCCTACC
CCGATCCTCTGCCTGTCGCTGCTCATTCTCCTCCACATCCACCCAGGATG
TGCCACCCTTGCCGCACATGGGGGGCCGGCCCTCCGACGAGGAAATGGCG
GCTGAGGACGCGGCGGCGGCGGCGGAAATGGAAGAGAGTCACATGAAGGA
CGGCTTGGCTATCAAGATGGCGACTTCCAGCTTCACGGGGAGAAGGAGGT
GGGTCCGAATCACCTTTGTTGCCTAAGCATACCCTTTGGGTGGACGGGGA
GGCTCCCTGTTCACGGGGCTCGTGGAAGGTGTTGCCCGCGAAGGGAAGAC
GAGCAGGGAGCTAGCGCCTGACCAGCGTCCGCCTCCTCCCATTCACCCAG
GTTCTACAAGACGGTGGGAGTGCGCCCCTCCTTGGACCCCTCTGGGCGAC
AGGTCCACCACTACGAGGTCACCCTGGACGGCTACCCCCTCAAGACCCCC
GGCACCGAGAAAGCCTACCGCCTCCCTACCGAGGGGCTGGCGCTGGCAGT
GGCCCTGGAGTGGGACCAGCAGGTCACGTACAAAGGGGTGGAGCCTACCT
ACATGCCCCTCACGGGCATCGCCACCATTGCCTTGGACGAAATCGTCTTC
AGCCGGCACTCCACCATTGACCGCTGCCTCCGTTATTTGGCCACAGATAC
AGTTTGCTACTGCTTCCCCGAGGAGGAGGACGATCATAAGCTGTTGCGAC
GACAGCAGAAGACCTGGGAGCCCTTACTCGGCTGGCTCCGAGACGAATTT
GGGGTGCACATCACCAAGCCCGCGCATATGCTGGATGTCTGCCACAACAG
CCCGGAAACGCTTCAAAAGGTGAGGATAATGCTCCAGGAGATGGACCCGT
TCACGCTAGCGGCCTTCCTCTCCCTCGTACTTGACCTGAAAAGCGTGATC
ACGGCGCTGGCCCTCGTCTTCAGACACGTGACCGTGGAGGAAGCCTGCCA
AGCGAGCGCGCTGGAGGAGGCCCATCAAAAGGCCGCCTGGGGCTCCGTTG
ACCTCTATCACGAGCTTGAAGAGACGGTTCTGTACACGCAGACGGCAGCG
GCGTCGTCGTTTTTGTGGTTGTTGCACGAAGAAGAGGCGGGGGACTCAAA
GGAACTGGGAAAGAATGCAGGAGTGATGCCGCATGTGGAGTTGAAGGCTC
GGGTCAAGGCGAGACTTAAAAAGGAATTTCCGGACAGCACGCCCGAGTAG
GCGTGTCTAGGAAAAGAAAACAAGAGGTCACGTGTGAAATATTTCTCTAA
GCTCCTCATCCTTGCGAGGCCCACAGCCTTCTCGCTGGTTTACCGATTCG
CTACTTGGTCCTCGAACACGGTACCGCTCGCTTTTGTGGTTAGTGAGACA
TAAGACTGACCTCGCTCGATCGCAACTAGAGGAAATTATACTCCAGAAGG
GACACTACGCGTATAATTATTCACTCATATTTTTAACATGCAGCAAAGGT
CATTAATTGAAATTGGAACATAGGAATCGCGTGCAATTTATCCTCCATGT
AACATACTCAACATGGCATTTAGTTAATCGATTAAGGGAATAAAAGAAGC
GTACATTGTATGTGTGATGAAATAAATGTTGCCAAAGCAGGCGCATCGGA
CAATTAATCGCTCTCAGCCTGTTCATCG

Coding sequence (CDS) from alignment at CM002457.1:933019..935596-

>rna1561 ID=rna1561|Name=rna1561|organism=Nannochloropsis gaditana|type=CDS|length=2514bp|location=Sequence derived from alignment at CM002457.1:933019..935596- (Nannochloropsis gaditana)
GTTCTACAAGACGGTGGGAGTGCGCCCCTCCTTGGACCCCTCTGGGCGAC
AGGTCCACCACTACGAGGTCACCCTGGACGGCTACCCCCTCAAGACCCCC
GGCACCGAGAAAGCCTACCGCCTCCCTACCGAGGGGCTGGCGCTGGCAGT
GGCCCTGGAGTGGGACCAGCAGGTCACGTACAAAGGGGTGGAGCCTACCT
ACATGCCCCTCACGGGCATCGCCACCATTGCCTTGGACGAAATCGTCTTC
AGCCGGCACTCCACCATTGACCGCTGCCTCCGTTATTTGGCCACAGATAC
AGTTTGCTACTGCTTCCCCGAGGAGGAGGACGATCATAAGCTGTTGCGAC
GACAGCAGAAGACCTGGGAGCCCTTACTCGGCTGGCTCCGAGACGAATTT
GGGGTGCACATCACCAAGCCCGCGCATATGCTGGATGTCTGCCACAACAG
CCCGGAAACGCTTCAAAAGGTGAGGATAATGCTCCAGGAGATGGACCCGT
TCACGCTAGCGGCCTTCCTCTCCCTCGTACTTGACCTGAAAAGCGTGATC
ACGGCGCTGGCCCTCGTCTTCAGACACGTGACCGTGGAGGAAGCCTGCCA
AGCGAGCGCGCTGGAGGAGGCCCATCAAAAGGCCGCCTGGGGCTCCGTTG
ACCTCTATCACGAGCTTGAAGAGACGGTTCTGTACACGCAGACGGCAGCG
GCGTCGTCGTTTTTGTGGTTGTTGCACGAAGAAGAGGCGGGGGACTCAAA
GGAACTGGGAAAGAATGCAGGAGTGATGCCGCATGTGGAGTTGAAGGCTC
GGGTCAAGGCGAGACTTAAAAAGGAATTTCCGGACAGCACGCCCGAGTAG
ATGTCGACCGTCCCCAGGGCAAGCCTTCGATTCACGCGGACACTGCGCGG
GCCTGGGCAGCGTCAGATCAGGGGCCGCAACTCGACCCCGCGGTCTCAAT
CTCGGCACGCGCTTACGTACCATTCATCTTTGACTGCCGGCATCGCCTCC
TGGGGCCCTGTCGTAAGGCACGCTGCCTCGCTGGCACCTTTGGCATGCAA
CGGCCTACCCCGATCCTCTGCCTGTCGCTGCTCATTCTCCTCCACATCCA
CCCAGGATGTGCCACCCTTGCCGCACATGGGGGGCCGGCCCTCCGACGAG
GAAATGGCGGCTGAGGACGCGGCGGCGGCGGCGGAAATGGAAGAGAGTCA
CATGAAGGACGGCTTGGCTATCAAGATGGCGACTTCCAGCTTCACGGGGA
GAAGGAGGTTCTACAAGACGGTGGGAGTGCGCCCCTCCTTGGACCCCTCT
GGGCGACAGGTCCACCACTACGAGGTCACCCTGGACGGCTACCCCCTCAA
GACCCCCGGCACCGAGAAAGCCTACCGCCTCCCTACCGAGGGGCTGGCGC
TGGCAGTGGCCCTGGAGTGGGACCAGCAGGTCACGTACAAAGGGGTGGAG
CCTACCTACATGCCCCTCACGGGCATCGCCACCATTGCCTTGGACGAAAT
CGTCTTCAGCCGGCACTCCACCATTGACCGCTGCCTCCGTTATTTGGCCA
CAGATACAGTTTGCTACTGCTTCCCCGAGGAGGAGGACGATCATAAGCTG
TTGCGACGACAGCAGAAGACCTGGGAGCCCTTACTCGGCTGGCTCCGAGA
CGAATTTGGGGTGCACATCACCAAGCCCGCGCATATGCTGGATGTCTGCC
ACAACAGCCCGGAAACGCTTCAAAAGGTGAGGATAATGCTCCAGGAGATG
GACCCGTTCACGCTAGCGGCCTTCCTCTCCCTCGTACTTGACCTGAAAAG
CGTGATCACGGCGCTGGCCCTCGTCTTCAGACACGTGACCGTGGAGGAAG
CCTGCCAAGCGAGCGCGCTGGAGGAGGCCCATCAAAAGGCCGCCTGGGGC
TCCGTTGACCTCTATCACGAGCTTGAAGAGACGGTTCTGTACACGCAGAC
GGCAGCGGCGTCGTCGTTTTTGTGGTTGTTGCACGAAGAAGAGGCGGGGG
ACTCAAAGGAACTGGGAAAGAATGCAGGAGTGATGCCGCATGTGGAGTTG
AAGGCTCGGGTCAAGGCGAGACTTAAAAAGGAATTTCCGGACAGCACGCC
CGAGTAGATGTCGACCGTCCCCAGGGCAAGCCTTCGATTCACGCGGACAC
TGCGCGGGCCTGGGCAGCGTCAGATCAGGGGCCGCAACTCGACCCCGCGG
TCTCAATCTCGGCACGCGCTTACGTACCATTCATCTTTGACTGCCGGCAT
CGCCTCCTGGGGCCCTGTCGTAAGGCACGCTGCCTCGCTGGCACCTTTGG
CATGCAACGGCCTACCCCGATCCTCTGCCTGTCGCTGCTCATTCTCCTCC
ACATCCACCCAGGATGTGCCACCCTTGCCGCACATGGGGGGCCGGCCCTC
CGACGAGGAAATGGCGGCTGAGGACGCGGCGGCGGCGGCGGAAATGGAAG
AGAGTCACATGAAGGACGGCTTGGCTATCAAGATGGCGACTTCCAGCTTC
ACGGGGAGAAGGAG

Synonyms

Publications