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Properties
| Property Name | Value |
|---|
| Product | nucleotide sugar transporter family protein |
| Orig transcript id | gnl|cribi|Naga_100007g15.6443.mrna |
| Orig protein id | gnl|cribi|Naga_100007g15.6443 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 1; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002457.1 | supercontig | CM002457.1:929649..931900 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna1558 ID=rna1558|Name=rna1558|organism=Nannochloropsis gaditana|type=mRNA|length=663bp
ATGTGGAGATTTTTGTTCTGGCGGTCTGCAAGAATACCGTCGCGAAGCCT
ACTCGTCGTGCTCTCTCTCCTACTCCTTATCCTTCTCCTCAAGCCTGCCA
CTTCGTTCACCGTCGAAGTTGCCCCAGGCACAGTAGAATGCTACATTACA
GTGGCTACTCAAGGCGATGATTTCTTAGGTAATTTCGAGGTACTGACGGG
GGGCAGCTATGCCCCTGTGGAAGTGACCGTCGAAGGCCCTGATGGGAAGC
TTTTGTGGCGAGCAGCAGACAAGTCTGAGGAAACATTTTCTTTCGAGGCC
GAGGAGAACGGGGATCATACCTTGTGTATAAGTAATGGTGCAAGAGGGCG
GGCTGACGATGGGATACCTCGATTGGTGGGCTTCTCGTTTCGGACGGACG
TGCTAGTAGACGAGGCGATAGCAAGCGAGCAGAGCATCCGGCGCCTGATA
GAACTCGGAAATTCTCTCACGAAAGGTTTGACCAATGTGATGGATCATCA
AAGCTACATGCGACAGCGTGAGGATCTGCATGCCTCGACGATGGAAAGCA
TTGGCTCCCGAGTACTGATTTGGACGGTAGTGGAAGCAGTTGTCCTGGTT
GGAATGGCTGTTTGGCAAATATCTATCATTTCCAAATTTTTCGAGGTTCG
TCGGGCCGTTTGA back to topprotein sequence of rna1558 >rna1558-protein ID=rna1558-protein|Name=rna1558|organism=Nannochloropsis gaditana|type=polypeptide|length=346bp
MLDMTTIFAMFGNVGSVVGVVIMNKYIVAVDAFNFMIFLSFTHFVFTYLG
CSVLLHLGFFNYKPAPIRGVLPVALGSLGSVAFMNLNLAHNSVGFYQLSK
LACIPVTIALERAFYGKTVPGPVLVTLIPITIGVGIATVNDVSVNLVGTA
FAALAVLFTSLAQIFTSTYQKQLDCDALQLLYHSSPLIAAGSFLMIPFFD
NVRYLVQTSISLSLLNHVLSSCVLALGVNISNYLVLGKTSPLTYQVLGHL
KTILILVLGFVVFKYKSNARAVVGILIALGGVIAYTELKRRMSLQQGGRA
GMSSSHSGLRRGFEGLSYSKVAADEEIPDGEIGGAGRLELMGAMKV back to topmRNA from alignment at CM002457.1:929649..931900+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna1558 ID=rna1558|Name=rna1558|organism=Nannochloropsis gaditana|type=mRNA|length=2252bp|location=Sequence derived from alignment at CM002457.1:929649..931900+ (Nannochloropsis gaditana)
TGACGGGAAAAGGTCAAGAGGATCCATAATGATGGAAGTCACATGTGCTC
ATGTTTTCACGGAAAGAAAGCATGATCAGGCGTGATAAAGGCAAAGCGCA
GGCGCGCCTGCGGGAACTTCTACGCCGACGAGGCTCCTTCTTCTGATTGG
CGCATTTGAAAAACCTAGGGCATTTTTGGATGCATGCGCCTAGCTTTTTC
AACGACGTTTTAGCGAACAGTTATTGACGGACACAATCGCATACATAAAT
ACAGGTAGGGGCTGGCGCAAGTGGTTGACACTACCTCGTTTCATCGCCTG
TTGTAGCGTACGGGGCTGCAGCGTTGTCATACTATCGTGTGAAAAGTTCG
TGCACCCCGCATCGAGCACTAAAAGTTGTGATTTCAAATTAAACAATAAT
CGAAAAGGTAAGTCAGATACTTGTTGCGTTGGGTAGAACGTATCGTGTGG
AGGGGACGAGATTGTCTTTGAATCCACGAGAGGCCTGTACCACCCGTGGG
AGGCGGGTAGAGTCCGTTTCCGCTATGGCTTTTAAAGCTCACGCAATGGC
TGAAATAGAGCCAGCAAAGATGCTCTAACTATAGCTTCATATAAAATTAT
GAAGTGTCATGCGCGGGGCCGCTGGCTGGGATGATATACTTCAGCATCGG
CGTGCAGATTCACTCGATCTCTCTTGCAGCCCGCCACCTAGCCTCATGAT
TACACTCACCAGACTActctccctcgccacttTACCTACCATCACTCAGA
TGTTGGATATGACGACAATATTCGCCATGTTCGGCAACGTGGGCTCTGTC
GTGGGTGTGGTGATCATGAACAAGTACATCGTCGCCGTCGACGCCTTCAA
TTTCAtgatcttcctctccttcacccACTTCGTCTTCACCTACCTGGGgt
gctccgtcctcctccacctcggatTCTTCAACTACAAACCGGCCCCTATC
cgcggcgtcctccccgtaGCCCTGGGCTCCTTGGGCTCTGTCGCCTTCAT
GAATTTGAATCTGGCGCATAATTCCGTTGGCTTCTACCAGCTCTCTAAGC
TAGCTTGCATCCCTGTGACGATCGCCCTTGAGCGTGCCTTCTATGGCAAA
ACAGTCCCAGGCCCCGTCCTTGTCACGCTGATTCCCATCACGATCGGGGT
GGGCATCGCGACCGTGAACGACGTGAGCGTCAACCTAGTGGGTACCGCCT
tcgccgccctggccgtcctcttcacctccctgGCCCAAATCTTCACATCC
ACCTACCAGAAGCAGCTGGACTGCGAcgccctccagctcctctaCCACTC
GTCGCCCCTCATCGCGGCCGGCTCCTTCCTCATGATCCCTTTCTTCGACA
ACGTCCGCTACCTGGTCCAGACCTCaatctccctctccctcctcaaccac
gtcctctcctcctgcgtcctcgCCCTGGGCGTCAACATCTCCAACTACCT
AGTGCTAGGCAAGACGTCTCCCCTCACCTACCAGGTGCTGGGGCACCTCA
AGACCATCCTCATTTTGGTGCTTGGCTTCGTGGTGTTCAAGTACAAGTCC
AACGCCCGCGCCGTCGTCGGCATCCTGATCGCCTTGGGCGGCGTCATTGC
CTACACCGAGTTGAAGCGCCGGATGTCTCTGCAGCAAGGCGGTAGGGCTG
GAATGAGCAGCAGTCACAGCGGGCTACGGAGGGGCTTTGAGGGCCTGTCC
TACAGTAAGGTGGCGGCCGACGAGGAAATCCCCGACGGCGAGATAGGTGG
CGCCGGTCGGTTGGAGCTGATGGGCGCGATGAAGgtgtgaggaggatgag
gaagcgCCGGCGGAGGCTGTAGGGGTCCGTAAAGTACCTGCCGTGTGGCC
CGGGAGGCGGCCCACGGGACCATGGACTCGGAAGGGCGGATGGCGCGGAT
GGAGGCTACCGGATGCACCGTGTATTGCGGCCATGGGCCGTGAGCAAAAA
GTatgaagaaagggaagaatgCCGGAGACCCGGTGGGTGGAGTGGGGGGC
AGAAGGGGCGCGACGCCTCGCGCAGGCCTCGAACAGAGTCTGTAATGTAC
GACGTAATAGCGAATTTAGAGCCCAAGTCGGCAAGTCATGCTAGCTTGCT
TGTAGTGGCTTGTCGTTGAGCGCGCGGCGAAGGATAAGAAACAGGCGCGA
GGAAGAAATTGGTACGAAAAAGCGTAGAAGCACGAGAAACTGAACGATCC
TTTCCGACGCTTTAACACGCGACAGAAATTATTTTAACGACAATGTTTCT
CT back to topCoding sequence (CDS) from alignment at CM002457.1:929649..931900+ >rna1558 ID=rna1558|Name=rna1558|organism=Nannochloropsis gaditana|type=CDS|length=1041bp|location=Sequence derived from alignment at CM002457.1:929649..931900+ (Nannochloropsis gaditana)
ATGTTGGATATGACGACAATATTCGCCATGTTCGGCAACGTGGGCTCTGT
CGTGGGTGTGGTGATCATGAACAAGTACATCGTCGCCGTCGACGCCTTCA
ATTTCAtgatcttcctctccttcacccACTTCGTCTTCACCTACCTGGGg
tgctccgtcctcctccacctcggatTCTTCAACTACAAACCGGCCCCTAT
CcgcggcgtcctccccgtaGCCCTGGGCTCCTTGGGCTCTGTCGCCTTCA
TGAATTTGAATCTGGCGCATAATTCCGTTGGCTTCTACCAGCTCTCTAAG
CTAGCTTGCATCCCTGTGACGATCGCCCTTGAGCGTGCCTTCTATGGCAA
AACAGTCCCAGGCCCCGTCCTTGTCACGCTGATTCCCATCACGATCGGGG
TGGGCATCGCGACCGTGAACGACGTGAGCGTCAACCTAGTGGGTACCGCC
TtcgccgccctggccgtcctcttcacctccctgGCCCAAATCTTCACATC
CACCTACCAGAAGCAGCTGGACTGCGAcgccctccagctcctctaCCACT
CGTCGCCCCTCATCGCGGCCGGCTCCTTCCTCATGATCCCTTTCTTCGAC
AACGTCCGCTACCTGGTCCAGACCTCaatctccctctccctcctcaacca
cgtcctctcctcctgcgtcctcgCCCTGGGCGTCAACATCTCCAACTACC
TAGTGCTAGGCAAGACGTCTCCCCTCACCTACCAGGTGCTGGGGCACCTC
AAGACCATCCTCATTTTGGTGCTTGGCTTCGTGGTGTTCAAGTACAAGTC
CAACGCCCGCGCCGTCGTCGGCATCCTGATCGCCTTGGGCGGCGTCATTG
CCTACACCGAGTTGAAGCGCCGGATGTCTCTGCAGCAAGGCGGTAGGGCT
GGAATGAGCAGCAGTCACAGCGGGCTACGGAGGGGCTTTGAGGGCCTGTC
CTACAGTAAGGTGGCGGCCGACGAGGAAATCCCCGACGGCGAGATAGGTG
GCGCCGGTCGGTTGGAGCTGATGGGCGCGATGAAGgtgtga back to top
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