rna1557, rna1557 (mRNA) Nannochloropsis gaditana

Overview
Namerna1557
Unique Namerna1557
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1179
Alignment locationCM002457.1:928113..928775 +

Link to JBrowse

Properties
Property NameValue
Producttransmembrane emp24 domain trafficking protein 2
Orig transcript idgnl|cribi|Naga_100007g16.6461.mrna
Orig protein idgnl|cribi|Naga_100007g16.6461
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:928113..928775 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100007g16gene1499Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1557rna1557-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29134.1cds1553Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1557 ID=rna1557|Name=rna1557|organism=Nannochloropsis gaditana|type=mRNA|length=1179bp
ATGGTAAAGACGTACAATACCCTCTCAGGACCCTTCTCATCTCATGGTGA
GGAGACTCCCGCCGGCACACCTTCCTCGCTCCCAAAGCATCATCTCCACC
AGTTCCCGTCGTCCGAGGCCCTGACTGACGAGACTGAATTTCCACTTCCA
AGTCCCTTCACCCCCGCGGACTACAAGAGCATGGCCATGGAGATGGCCTA
CCTGACCCCAAGAAGAAAAGGGCCTGCCTCAGACCGCAGGTTGGGCCTTT
CAGTATCAGGGGGTGGGGTGGACCCGTCCCTGTCCTTTCAACCAGAGCCC
AGGACCAGCGACGCGAGCCCCTCTTATACCGTCGATCATGAGGAACGAAG
TCTCCTGGCGGAGGGCACCGAACCTTCGGCCTTGCAAACACAAGTCGTGC
GGCGTCGGAGCCCGTCGTCAAGGCCCTCCTCATTCTCCTCCTCCTTCGCG
ACAACGTCTTCCGAGACTGCGGCCGCTCCCAGCAAACTCACGCTCCTTCT
CTTCGCGGCCTCCATCCTCTTCCTCTTCGCGGACCAAAACCTGCTGGCCC
CGAATCTGACGGCCGTGGCCAGGGACATGGGCTTTGACGACGCTGAGCGC
GATCTGAAACTCGGAGGGCAGATTCCCTTCGCTTTTTTTGTGGTGGGAGG
GGCGGTCTCGATCGTGGTGGGTCCGATGGCGGACGTCATGAACCGAAAAA
CCCTGTACGTCTGCACGTGCTTAGTGGGCATCATCCCCTGCCTCCTCACC
TACTGGGTGGTCAGCTTTAACCAGTTCTTCCTCCTCCGGACCCTGACGGG
CGTGGCCGTGGGCGGGGCCTTTCCGCTCATCTACTCCCTGGCCGCCGACA
TCACCACCCCGGATCAGCGCGCCCTAGCCTCCTCCCTCATCACGATCAGC
ATGGGCGTTGGCGGCACCTTAGGCCAGGGCGTGGCGGGCTTCGTGGGCCC
GGTCTATGGCTGGCGCATGCCCTTCGTCATAATTGCACTGCCCTCCCTGC
TCGTGATCGCGCTAGTCATGCTGACCATGGAGGAGCCCCCCCCGCTCTCA
TCATATCGGTTCGGTGGAGGGGAGGGGACCCCGAGGCGCAAGCGAAGCCC
TCCTGATTCGCCCAGAGGAGGCAGGAGAGGCGGCGGACGAGGAATGGGGA
GAGGAGAGGGGGGAGGAGGAAAATCGTGA
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protein sequence of rna1557

>rna1557-protein ID=rna1557-protein|Name=rna1557|organism=Nannochloropsis gaditana|type=polypeptide|length=220bp
MWRFLFWRSARIPSRSLLVVLSLLLLILLLKPATSFTVEVAPGTVECYIT
VATQGDDFLGNFEVLTGGSYAPVEVTVEGPDGKLLWRAADKSEETFSFEA
EENGDHTLCISNGARGRADDGIPRLVGFSFRTDVLVDEAIASEQSIRRLI
ELGNSLTKGLTNVMDHQSYMRQREDLHASTMESIGSRVLIWTVVEAVVLV
GMAVWQISIISKFFEVRRAV
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mRNA from alignment at CM002457.1:928113..928775+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1557 ID=rna1557|Name=rna1557|organism=Nannochloropsis gaditana|type=mRNA|length=663bp|location=Sequence derived from alignment at CM002457.1:928113..928775+ (Nannochloropsis gaditana)
ATGTGGAGATTTTTGTTCTGGCGGTCTGCAAGAATACCGTCGCGAAGCCT
ACTCGTCGTGCTCTCTCTCCTACTCCTTATCCTTCTCCTCAAGCCTGCCA
CTTCGTTCACCGTCGAAGTTGCCCCAGGCACAGTAGAATGCTACATTACA
GTGGCTACTCAAGGCGATGATTTCTTAGGTAATTTCGAGGTACTGACGGG
GGGCAGCTATGCCCCTGTGGAAGTGACCGTCGAAGGCCCTGATGGGAAGC
TTTTGTGGCGAGCAGCAGACAAGTCTGAGGAAACATTTTCTTTCGAGGCC
GAGGAGAACGGGGATCATACCTTGTGTATAAGTAATGGTGCAAGAGGGCG
GGCTGACGATGGGATACCTCGATTGGTGGGCTTCTCGTTTCGGACGGACG
TGCTAGTAGACGAGGCGATAGCAAGCGAGCAGAGCATCCGGCGCCTGATA
GAACTCGGAAATTCTCTCACGAAAGGTTTGACCAATGTGATGGATCATCA
AAGCTACATGCGACAGCGTGAGGATCTGCATGCCTCGACGATGGAAAGCA
TTGGCTCCCGAGTACTGATTTGGACGGTAGTGGAAGCAGTTGTCCTGGTT
GGAATGGCTGTTTGGCAAATATCTATCATTTCCAAATTTTTCGAGGTTCG
TCGGGCCGTTTGA
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Coding sequence (CDS) from alignment at CM002457.1:928113..928775+

>rna1557 ID=rna1557|Name=rna1557|organism=Nannochloropsis gaditana|type=CDS|length=663bp|location=Sequence derived from alignment at CM002457.1:928113..928775+ (Nannochloropsis gaditana)
ATGTGGAGATTTTTGTTCTGGCGGTCTGCAAGAATACCGTCGCGAAGCCT
ACTCGTCGTGCTCTCTCTCCTACTCCTTATCCTTCTCCTCAAGCCTGCCA
CTTCGTTCACCGTCGAAGTTGCCCCAGGCACAGTAGAATGCTACATTACA
GTGGCTACTCAAGGCGATGATTTCTTAGGTAATTTCGAGGTACTGACGGG
GGGCAGCTATGCCCCTGTGGAAGTGACCGTCGAAGGCCCTGATGGGAAGC
TTTTGTGGCGAGCAGCAGACAAGTCTGAGGAAACATTTTCTTTCGAGGCC
GAGGAGAACGGGGATCATACCTTGTGTATAAGTAATGGTGCAAGAGGGCG
GGCTGACGATGGGATACCTCGATTGGTGGGCTTCTCGTTTCGGACGGACG
TGCTAGTAGACGAGGCGATAGCAAGCGAGCAGAGCATCCGGCGCCTGATA
GAACTCGGAAATTCTCTCACGAAAGGTTTGACCAATGTGATGGATCATCA
AAGCTACATGCGACAGCGTGAGGATCTGCATGCCTCGACGATGGAAAGCA
TTGGCTCCCGAGTACTGATTTGGACGGTAGTGGAAGCAGTTGTCCTGGTT
GGAATGGCTGTTTGGCAAATATCTATCATTTCCAAATTTTTCGAGGTTCG
TCGGGCCGTTTGA
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Synonyms
Publications