EWM29134.1, cds1553 (CDS) Nannochloropsis gaditana

Overview
NameEWM29134.1
Unique Namecds1553
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:928113..928775 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29134.1
Producttransmembrane emp24 domain trafficking protein 2
Orig transcript idgnl|cribi|Naga_100007g16.6461.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:928113..928775 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0005737cytoplasm
GO:0016021integral component of membrane
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
Vocabulary: INTERPRO
TermDefinition
IPR015720TMP21-related
IPR009038GOLD
Homology
BLAST of EWM29134.1 vs. NCBI_GenBank
Match: gi|553196515|ref|XP_005856362.1| (transmembrane emp24 domain trafficking protein 2 [Nannochloropsis gaditana CCMP526] >gi|422292695|gb|EKU19997.1| transmembrane emp24 domain trafficking protein 2 [Nannochloropsis gaditana CCMP526] >gi|585111654|gb|EWM29134.1| transmembrane emp24 domain trafficking protein 2 [Nannochloropsis gaditana])

HSP 1 Score: 446.047 bits (1146), Expect = 2.095e-158
Identity = 220/220 (100.00%), Postives = 220/220 (100.00%), Query Frame = 0
Query:    1 MWRFLFWRSARIPSRSLLVVLSLLLLILLLKPATSFTVEVAPGTVECYITVATQGDDFLGNFEVLTGGSYAPVEVTVEGPDGKLLWRAADKSEETFSFEAEENGDHTLCISNGARGRADDGIPRLVGFSFRTDVLVDEAIASEQSIRRLIELGNSLTKGLTNVMDHQSYMRQREDLHASTMESIGSRVLIWTVVEAVVLVGMAVWQISIISKFFEVRRAV 220
            MWRFLFWRSARIPSRSLLVVLSLLLLILLLKPATSFTVEVAPGTVECYITVATQGDDFLGNFEVLTGGSYAPVEVTVEGPDGKLLWRAADKSEETFSFEAEENGDHTLCISNGARGRADDGIPRLVGFSFRTDVLVDEAIASEQSIRRLIELGNSLTKGLTNVMDHQSYMRQREDLHASTMESIGSRVLIWTVVEAVVLVGMAVWQISIISKFFEVRRAV
Sbjct:    1 MWRFLFWRSARIPSRSLLVVLSLLLLILLLKPATSFTVEVAPGTVECYITVATQGDDFLGNFEVLTGGSYAPVEVTVEGPDGKLLWRAADKSEETFSFEAEENGDHTLCISNGARGRADDGIPRLVGFSFRTDVLVDEAIASEQSIRRLIELGNSLTKGLTNVMDHQSYMRQREDLHASTMESIGSRVLIWTVVEAVVLVGMAVWQISIISKFFEVRRAV 220          
BLAST of EWM29134.1 vs. NCBI_GenBank
Match: gi|443684502|gb|ELT88430.1| (hypothetical protein CAPTEDRAFT_18698 [Capitella teleta])

HSP 1 Score: 111.309 bits (277), Expect = 7.104e-27
Identity = 66/207 (31.88%), Postives = 111/207 (53.62%), Query Frame = 0
Query:   19 VVLSLLLLILLLKPATSFTVEVAPGTVECYITVATQGDDFLGNFEVLTGGSYAPVEVTVEGPDGKLLWRAADKSEETFSFEAEENGDHTLCISNGARGRADDGIPRLVGFSF----RTDVLVD-EAIASEQSIRRLIELGNSLTKGLTNVMDHQSYMRQREDLHASTMESIGSRVLIWTVVEAVVLVGMAVWQISIISKFFEVRRAV 220
            V+LS+L  ++L K + ++ + +     EC+    T G      FEV  GG +  ++V + GPDGK ++    +S   ++F A  +G +  C SN    +     P++V FS     +  V +D E+ A+  +  +L E+ N L+  LT V   Q YM  RE +H +  ++  SRV++W+  EA+VL+ M + Q+  + +FFEVRR V
Sbjct:    6 VILSVLACLMLFKASDAYFINIDANAEECFFDKVTSGTKMSLMFEVAEGG-FLDIDVKIVGPDGKNIYYGERESNGKYTFAAHMDGVYKYCFSN----QMSTMTPKIVMFSMDIGDKPKVDMDKESEAAHHN--KLEEMINELSTSLTGVKHEQEYMEVRERIHRAINDNTNSRVVLWSFFEALVLIAMTLGQVYYLKRFFEVRRVV 205          
BLAST of EWM29134.1 vs. NCBI_GenBank
Match: gi|291235572|ref|XP_002737711.1| (PREDICTED: transmembrane emp24 domain-containing protein 2-like isoform 2 [Saccoglossus kowalevskii])

HSP 1 Score: 110.153 bits (274), Expect = 1.786e-26
Identity = 63/206 (30.58%), Postives = 107/206 (51.94%), Query Frame = 0
Query:   16 SLLVVLSLLLLILLLKPATSFTVEVAPGTVECYITVATQGDDFLGNFEVLTGGSYAPVEVTVEGPDGKLLWRAADKSEETFSFEAEENGDHTLCISNGARGRADDGIPRLVGFSFRT-DVLVDEAIASEQSIRRLIELGNSLTKGLTNVMDHQSYMRQREDLHASTMESIGSRVLIWTVVEAVVLVGMAVWQISIISKFFEVRRAV 220
             L+ V SLL++++ + P   + + +     EC+    T G      FEV  GG +  ++V + GPDGK+++    +S   ++F A  +G +  C SN    +     P++V FS    D      + +++   +L E+ N L   LT V   Q YM  RE +H +  ++  SRV++W+  E++VLV M + Q+  + +FFEVRR V
Sbjct:    3 QLIFVWSLLMVLVHIGPTEGYFMAIDAHADECFHDKVTSGTKMGLTFEVAEGG-FLDIDVKITGPDGKVIYSGERESNGKYTFAAHMDGVYKYCFSN----KMSTMTPKIVMFSMDVGDSPKGSDMDTDEHHNKLEEMVNELATALTGVKHEQEYMEVRERIHRAINDNTNSRVVLWSFFESLVLVAMTLGQVYYLKRFFEVRRVV 203          
BLAST of EWM29134.1 vs. NCBI_GenBank
Match: gi|675377693|gb|KFM70595.1| (Transmembrane emp24 domain-containing protein 2, partial [Stegodyphus mimosarum])

HSP 1 Score: 110.153 bits (274), Expect = 2.367e-26
Identity = 68/211 (32.23%), Postives = 104/211 (49.29%), Query Frame = 0
Query:   11 RIPSRSLLVVLSLLLLILLLKPATSFTVEVAPGTVECYITVATQGDDFLGNFEVLTGGSYAPVEVTVEGPDGKLLWRAADKSEETFSFEAEENGDHTLCISNGARGRADDGIPRLVGFSFRT-DVLVDEAIASEQSIRRLIELGNSLTKGLTNVMDHQSYMRQREDLHASTMESIGSRVLIWTVVEAVVLVGMAVWQISIISKFFEVRRAV 220
             I S  L V+ ++ L+ + L     + V V     EC+    T G      FEV  GG +  ++V + GPDGK++++   +S   ++F A  +G +T C SN          P++V FS    +        +E    +L E+   L+  LT+V   Q YM  R+ +H +  ES  SRV++W   EA VLV M V Q+  + +FFEVRR V
Sbjct:    2 NIISHKLSVLQTVFLVTVFLPFINCYFVNVDAHAEECFFDKVTAGTKMGLTFEVAEGG-FLDIDVKITGPDGKVIYQGERESNGKYTFAAHTDGVYTYCFSNAMSTMT----PKIVMFSMDIGEAPKGHDAEAEAHQNKLEEMIKELSTSLTSVKHEQEYMAVRDRIHRAINESTNSRVVLWAFFEAAVLVAMTVGQVYYLRRFFEVRRVV 207          
BLAST of EWM29134.1 vs. NCBI_GenBank
Match: gi|576692328|gb|EUB55980.1| (Transmembrane emp24 domain-containing protein 2 [Echinococcus granulosus] >gi|674562096|emb|CDS23606.1| transmembrane emp24 domain containing protein [Echinococcus granulosus])

HSP 1 Score: 109.383 bits (272), Expect = 3.164e-26
Identity = 64/203 (31.53%), Postives = 106/203 (52.22%), Query Frame = 0
Query:   21 LSLLLLILLLKPATSFTVEVAPGTVECYITVATQGDDFLGNFEVLTGGSYAPVEVTVEGPDGKLLWRAADKSEETFSFEAEENGDHTLCISNGARGRADDGIPRLVGFSFRT---DVLVDEAIASEQSIRRLIELGNSLTKGLTNVMDHQSYMRQREDLHASTMESIGSRVLIWTVVEAVVLVGMAVWQISIISKFFEVRRAV 220
            L++++L  L   + ++ V +     +C+   A  GD     FEV  GG Y  + V +  PDG  L++   +S   +SF A   G +T C +N    +     P+ V F+       +  +E IA EQS  +LI++ N L+  + N      Y+  RE+LH +  E+  SRV++W   EA+++VGM++ Q+  + +FFEVRR V
Sbjct:    4 LAVVVLSFLSCSSYAYFVTIDAYAEQCFFDRAKPGDRLTLFFEVSEGGFY-DINVKLTAPDGSTLYKIEKESSGHYSFTANTEGKYTYCFNN----KMSTVTPKTVLFALEKGSQKLGKEEGIAPEQS--KLIDMVNELSNAVLNAKHEMEYLEVRENLHRAINENTNSRVVMWAAFEAIIIVGMSLGQVYYLKRFFEVRRMV 199          
BLAST of EWM29134.1 vs. NCBI_GenBank
Match: gi|675889146|ref|XP_009030075.1| (hypothetical protein HELRODRAFT_69964 [Helobdella robusta] >gi|555688075|gb|ESN91307.1| hypothetical protein HELRODRAFT_69964 [Helobdella robusta])

HSP 1 Score: 109.383 bits (272), Expect = 4.210e-26
Identity = 62/202 (30.69%), Postives = 102/202 (50.50%), Query Frame = 0
Query:   23 LLLLILLLKPATSFTVEVAPGTVECYITVATQGDDFLGNFEVLTGGSYAPVEVTVEGPDGKLLWRAADKSEETFSFEAEENGDHTLCISNGARGRADDGIPRLVGFSF----RTDVLVDEAIASEQSIRRLIELGNSLTKGLTNVMDHQSYMRQREDLHASTMESIGSRVLIWTVVEAVVLVGMAVWQISIISKFFEVRRAV 220
               LIL+ +    + + +     ECY    + G      FEV  GG +  ++V + GPDGK ++    +S   F+F A ++GD+  C SN    +     P++V F+     +  V  D    +E +  +L E+ + L+  L  V   Q YM  RE +H +  +S  SRV++W+  EA+VLV M + Q+  + +FFEVRR +
Sbjct:   14 FFTLILVFEYVAGYYITIDAHAEECYFDRVSSGTKLSLMFEVAEGG-FLDIDVHITGPDGKQIYSGERESNGKFTFAAHQDGDYKYCFSN----KMSTMTPKVVMFTMEIGEKAKVDSDGNKDTETTQNKLEEMISELSSKLYGVKHEQEYMEVRERIHRAINDSTNSRVVLWSFFEALVLVAMTLGQVYYLKRFFEVRRVI 210          
BLAST of EWM29134.1 vs. NCBI_GenBank
Match: gi|1069810703|ref|XP_018329110.1| (PREDICTED: transmembrane emp24 domain-containing protein 2-like [Agrilus planipennis] >gi|1069823900|ref|XP_018334679.1| PREDICTED: transmembrane emp24 domain-containing protein 2-like [Agrilus planipennis])

HSP 1 Score: 108.997 bits (271), Expect = 6.075e-26
Identity = 65/206 (31.55%), Postives = 106/206 (51.46%), Query Frame = 0
Query:   16 SLLVVLSLLLLILLLKPATSFTVEVAPGTVECYITVATQGDDFLGNFEVLTGGSYAPVEVTVEGPDGKLLWRAADKSEETFSFEAEENGDHTLCISNGARGRADDGIPRLVGFSFRT-DVLVDEAIASEQSIRRLIELGNSLTKGLTNVMDHQSYMRQREDLHASTMESIGSRVLIWTVVEAVVLVGMAVWQISIISKFFEVRRAV 220
            +LL+VL       ++   + + + V     EC+      G      FE+  GG +  ++V + GPDGK++++   +S   ++F A  NG +T C SN    +     P++V F+ +  +    E    E+S  +L ++   L+  LT V   Q YM+ R+ +H S  ES  SRV++W+  EAV+LV M   QI  + +FFEVRR V
Sbjct:    4 NLLIVL--FAYSSIINSVSCYYITVDADAEECFFDKVESGTKMSLTFEIAEGG-FLDIDVRIVGPDGKVIYQGERESSGKYTFAAHANGIYTYCFSN----KMSTMTPKVVMFNMQIGESAKHEENQGEESSTKLEDMIRELSGALTGVKQEQEYMQLRDRIHRSINESTNSRVVMWSFFEAVILVAMTFGQIYYLKRFFEVRRVV 202          
BLAST of EWM29134.1 vs. NCBI_GenBank
Match: gi|906462796|gb|KNC24993.1| (hypothetical protein FF38_11825 [Lucilia cuprina])

HSP 1 Score: 108.612 bits (270), Expect = 8.426e-26
Identity = 70/211 (33.18%), Postives = 109/211 (51.66%), Query Frame = 0
Query:   14 SRSLLVVLSLLLLILLLKPATSFTVEVAPGTVECYITVATQGDDFLGNFEVLTGGSYAPVEVTVEGPDGKLLWRAADKSEETFSFEAEENGDHTLCISNGARGRADDGIPRLVGFSFRTDVLVDEAIAS--EQSI--RRLIELGNSLTKGLTNVMDHQSYMRQREDLHASTMESIGSRVLIWTVVEAVVLVGMAVWQISIISKFFEVRRAV 220
             R+LLV +  L L+ LL+ A +F V V     EC+      G  F   FEV+ GG +  +++ V GPD  ++ ++  +S    +F A   G +T+C  N    +     P+LV FS         A  +  E+ I   +L ++   L+  LT+V   Q YM  R+ +H S  ES  SRV++W+  EA+VLV M + Q+  + +FFEV+R V
Sbjct:    2 QRNLLVTILTLALVQLLQTAQAFIVNVDAHNEECFFEKIEAGTKFSVTFEVIEGG-FLDIDIKVTGPDQGIMHQSEKESSSRLTFAAVTTGVYTVCFDN----QKSSMTPKLVMFSIDVGESPHRAPGAPGEEDIGHTKLEDMIRELSGTLTSVKHEQEYMHVRDKIHRSINESTNSRVVLWSTFEALVLVLMTIGQVYYLKRFFEVKRVV 207          
BLAST of EWM29134.1 vs. NCBI_GenBank
Match: gi|674576063|emb|CDS38354.1| (transmembrane emp24 domain containing protein [Echinococcus multilocularis])

HSP 1 Score: 107.842 bits (268), Expect = 1.296e-25
Identity = 67/209 (32.06%), Postives = 107/209 (51.20%), Query Frame = 0
Query:   15 RSLLVVLSLLLLILLLKPATSFTVEVAPGTVECYITVATQGDDFLGNFEVLTGGSYAPVEVTVEGPDGKLLWRAADKSEETFSFEAEENGDHTLCISNGARGRADDGIPRLVGFSFRT---DVLVDEAIASEQSIRRLIELGNSLTKGLTNVMDHQSYMRQREDLHASTMESIGSRVLIWTVVEAVVLVGMAVWQISIISKFFEVRRAV 220
            R ++VVLS L        + ++ V +     +C+   A  GD     FEV  GG Y  + V +  PDG  L++   +S   +SF A   G +T C +N    +     P+ V F+       +  +E IA EQS  +LI++ + L+  + N      Y+  RE+LH +  E+  SRV++W   EAV++VGM++ Q+  + +FFEVRR V
Sbjct:    3 RLVVVVLSFLSC-----SSYAYFVTIDANAEQCFFDRAKPGDRLTLFFEVSEGGFY-DINVKLTAPDGSTLYKIEKESSGHYSFTANTEGKYTYCFNN----KMSTVTPKTVLFALEKGSQKLGKEEGIAPEQS--KLIDMVDELSNAVLNAKHEMEYLEVRENLHRAINENTNSRVVMWAAFEAVIIVGMSLGQVYYLKRFFEVRRMV 199          
BLAST of EWM29134.1 vs. NCBI_GenBank
Match: gi|908464108|ref|XP_013086359.1| (PREDICTED: transmembrane emp24 domain-containing protein 2-like [Biomphalaria glabrata])

HSP 1 Score: 107.457 bits (267), Expect = 2.322e-25
Identity = 61/200 (30.50%), Postives = 102/200 (51.00%), Query Frame = 0
Query:   23 LLLLILLLKPATSFTVEVAPGTVECYITVATQGDDFLGNFEVLTGGSYAPVEVTVEGPDGKLLWRAADKSEETFSFEAEENGDHTLCISNGARGRADDGIPRLVGFSFRTDVLVDEAIASE--QSIRRLIELGNSLTKGLTNVMDHQSYMRQREDLHASTMESIGSRVLIWTVVEAVVLVGMAVWQISIISKFFEVRRAV 220
            ++ L+ L++ +  + + +     EC+    T G      FEV  GG +  +++ + GPDGK++     +S   ++F A  +G++  C SN          P++V FS        +A   E   +  +L E+ N L+  LT V   Q YM  RE +H S  ++  SRV++W+  EA+VLV M + Q+  + +FFEVRR V
Sbjct:   10 IVTLLSLIQSSEQYFISIDAHAEECFFDKVTSGTKMSLMFEVAEGG-FLDIDIKIYGPDGKVIHSGDRESNGKYTFAAHMDGNYKYCFSNAMSTMT----PKIVVFSIDIGEKPKDAAGEEGDANQNKLTEMINELSTALTGVKHEQEYMEVRERIHRSINDNTNSRVVLWSFFEALVLVAMTLGQVYYLKRFFEVRRVV 204          
The following BLAST results are available for this feature:
BLAST of EWM29134.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|553196515|ref|XP_005856362.1|2.095e-158100.00transmembrane emp24 domain trafficking protein 2 [... [more]
gi|443684502|gb|ELT88430.1|7.104e-2731.88hypothetical protein CAPTEDRAFT_18698 [Capitella t... [more]
gi|291235572|ref|XP_002737711.1|1.786e-2630.58PREDICTED: transmembrane emp24 domain-containing p... [more]
gi|675377693|gb|KFM70595.1|2.367e-2632.23Transmembrane emp24 domain-containing protein 2, p... [more]
gi|576692328|gb|EUB55980.1|3.164e-2631.53Transmembrane emp24 domain-containing protein 2 [E... [more]
gi|675889146|ref|XP_009030075.1|4.210e-2630.69hypothetical protein HELRODRAFT_69964 [Helobdella ... [more]
gi|1069810703|ref|XP_018329110.1|6.075e-2631.55PREDICTED: transmembrane emp24 domain-containing p... [more]
gi|906462796|gb|KNC24993.1|8.426e-2633.18hypothetical protein FF38_11825 [Lucilia cuprina][more]
gi|674576063|emb|CDS38354.1|1.296e-2532.06transmembrane emp24 domain containing protein [Ech... [more]
gi|908464108|ref|XP_013086359.1|2.322e-2530.50PREDICTED: transmembrane emp24 domain-containing p... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1557rna1557Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications