|
|
Properties
| Property Name | Value |
|---|
| Product | major facilitator superfamily |
| Orig transcript id | gnl|cribi|Naga_100007g17.6464.mrna |
| Orig protein id | gnl|cribi|Naga_100007g17.6464 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002457.1 | supercontig | CM002457.1:925568..926746 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna1556 ID=rna1556|Name=rna1556|organism=Nannochloropsis gaditana|type=mRNA|length=1432bp
TGTACAGAGATAACGTGACATTGTTGGTGGGAACGTGTGAGGAGGGAGGT
TATCCGAGGGGAGGTCGAGATAAGCCATAAGATAACAAGCAGAGTCAGCT
CATAAGTCTTGAACTCTGATCATGTTATGAACGTGACTGGCCGTCCATAT
GTATCGTCCAAGCTCTCTTATGCAATACTTTGGCATAAACTACGTCGCGG
CGCGGCGTCAGCACTTGTAGCACTACTGATTATTACCTGGTACCTCAGTG
AAAGCAGCTCTCAGCAGGCGATGGAGAAGTAATTATGGGGAATTCACCAG
CAAAACATAAGACTTGACACCCACGTACACACGCACAGAGATATTGTCCA
CGTGGTCTGCATCATTTGCGTTCCGTGTGGCGTGCAGTGAGCTCACGGCC
TTGCCTGCTCTATGAGCCAACGTCTTGTCCGCCTCTCTCAACACTTGCTG
GTACATCGTACGTCCTTGCACGCAACTTCCATCGCAGTCAGATTATCTCG
CACGACTAGACGGTGTCTTGTCACCGGTAACCAGGCAAATACCATGGCTG
ATGAGGTAGCCGAGTCCAGGAAAGCGGCAGCCAAAAAGATGGAGGAGGCA
GCGGATGCGGGCGAGCCGACAGTCTTCGACAAGATCGTAAAGAAAGAAAT
CCCCTCAAACTTCATCTACGAAGACGACGACTGCGTAGCCTTTCATGACT
TGAGTCCGCAAGGGCCCGTTCATTTCTTGGTTATCCCCAAGGACAGGGCC
GGTTTGTCTCGCCTAAGCAAAGCGGAAGAGAGCCACAAGGCCTTGCTAGG
CCATTTGTTGTACGTTGCGCAGCAGGTTGCGAAACAGGAAGGTTTAGTCC
CAGGTGGTTTCCGAGTGGTCATCAATGACGGTCCCGACGGGAGTCAGTCT
GTTTATCATTTGCATATCCACGTTATTGGTGGGCGACAGATGGGATGGCC
GCCTGGATGATCTACAGCTCATATTTTCTGCGTGTCCAGATCTGCATTGT
CGTTATTTGGGGTGTCTTCGTACTCTGGAATGATGAGGTGTATGAGCTAT
ATCATGCTGTGTTGAGTAACGGGTGAAGGGTTTTGGGTAAAGAGGTTTCG
AAGCTTACATGATTGGCAAAAATCTAAAGAAGATTAAAAAGTTGTGCAAA
TTCAGCAAAGCTTGTGCTGTTCATTTATACAATTGTATCGTAGCCAACAC
GTGTGGGTCTCGGTGCGATATTCGAGCTCGCCTCCCGTCATGAGTATGCC
CAACGGCCCATTCAAAAAGACGTTGAGCGCGGCTGCTTCCTCACCAGCAG
CCGGGTGCGACAGTGTAATTGTCCAAAGCAAACTTCATTGGCAGTGCGTA
GCTTGGAGATACAAATCCTTTTCCTGTGTGTATTTAGCATCACGATTCCC
TTCTCTGATCGTCCCTTTTTGAAGTACACTGC back to topprotein sequence of rna1556 >rna1556-protein ID=rna1556-protein|Name=rna1556|organism=Nannochloropsis gaditana|type=polypeptide|length=392bp
MVKTYNTLSGPFSSHGEETPAGTPSSLPKHHLHQFPSSEALTDETEFPLP
SPFTPADYKSMAMEMAYLTPRRKGPASDRRLGLSVSGGGVDPSLSFQPEP
RTSDASPSYTVDHEERSLLAEGTEPSALQTQVVRRRSPSSRPSSFSSSFA
TTSSETAAAPSKLTLLLFAASILFLFADQNLLAPNLTAVARDMGFDDAER
DLKLGGQIPFAFFVVGGAVSIVVGPMADVMNRKTLYVCTCLVGIIPCLLT
YWVVSFNQFFLLRTLTGVAVGGAFPLIYSLAADITTPDQRALASSLITIS
MGVGGTLGQGVAGFVGPVYGWRMPFVIIALPSLLVIALVMLTMEEPPPLS
SYRFGGGEGTPRRKRSPPDSPRGGRRGGGRGMGRGEGGGGKS back to topmRNA from alignment at CM002457.1:925568..926746+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna1556 ID=rna1556|Name=rna1556|organism=Nannochloropsis gaditana|type=mRNA|length=1179bp|location=Sequence derived from alignment at CM002457.1:925568..926746+ (Nannochloropsis gaditana)
ATGGTAAAGACGTACAATACCCTCTCAGGACCCTTCTCATCTCATGGTGA
GGAGACTCCCGCCGGCAcaccttcctcgctcccaaAGCATCATCTCCACC
AGTTCCCGTCGTCCGAGGCCCTGACTGACGAGACTGAATTTCCACTTCCA
AGTCCCTTCACCCCCGCGGACTACAAGAGCATGGCCATGGAGATGGCCTA
CCTGACcccaagaagaaaagggccTGCCTCAGACCGCAGGTTGGGCCTTT
CAGTATCAGGGGGTGGGGTGGAcccgtccctgtcctttcAACCAGAGCCC
AGGACCAGCGACGCGAGCCCCTCTTATACCGTCGATCATGAGGAACGAAG
TCTCCTGGCGGAGGGCACCGAACCTTCGGCCTTGCAAACACAAGTCGTGC
GGCGTCGGAGCCCGTCGTCAAGGccctcctcattctcctcctccttcgcg
acAACGTCTTCCGAGACTGCGGCCGCTCCCAGCAAACTcacgctccttct
cttcgcggcctccatcctcttcctcttcgcggACCAAAACCTGCTGGCCC
CGAATCTGACGGCCGTGGCCAGGGACATGGGCTTTGACGACGCTGAGCGC
GATCTGAAACTCGGAGGGCAGATTCCCTTCGCTTTTTttgtggtgggagg
ggcggtctCGATCGTGGTGGGTCCGATGGCGGACGTCATGAACCGAAAAA
CCCTGTACGTCTGCACGTGCTTAGTGGGCAtcatcccctgcctcctcacc
tACTGGGTGGTCAGCTTTAACcagttcttcctcctccggacCCTGACGGG
CgtggccgtgggcggggcCTTTCCGCTCATCTACTCCCTGGCCGCCGACA
TCACCACCCCGGATCAGCGCGCCctagcctcctccctcatcacgaTCAGC
ATGGGCGTTGGCGGCACCTTAGGCCagggcgtggcgggcttCGTGGGCCC
GGTCTATGGCTGGCGCATGCCCTTCGTCATAATTgcactgccctccctgc
tcgtgATCGCGCTAGTCATGCTGACCATGGAGGagccccccccgctctcA
TCATATCGGttcggtggaggggaggggacccCGAGGCGCAAGCGAAGCCC
TCCTGATTCGCccagaggaggcaggagaggcggcggacgaggaatgggga
gaggagaggggggaggaggaaaatcgtga back to topCoding sequence (CDS) from alignment at CM002457.1:925568..926746+ >rna1556 ID=rna1556|Name=rna1556|organism=Nannochloropsis gaditana|type=CDS|length=1179bp|location=Sequence derived from alignment at CM002457.1:925568..926746+ (Nannochloropsis gaditana)
ATGGTAAAGACGTACAATACCCTCTCAGGACCCTTCTCATCTCATGGTGA
GGAGACTCCCGCCGGCAcaccttcctcgctcccaaAGCATCATCTCCACC
AGTTCCCGTCGTCCGAGGCCCTGACTGACGAGACTGAATTTCCACTTCCA
AGTCCCTTCACCCCCGCGGACTACAAGAGCATGGCCATGGAGATGGCCTA
CCTGACcccaagaagaaaagggccTGCCTCAGACCGCAGGTTGGGCCTTT
CAGTATCAGGGGGTGGGGTGGAcccgtccctgtcctttcAACCAGAGCCC
AGGACCAGCGACGCGAGCCCCTCTTATACCGTCGATCATGAGGAACGAAG
TCTCCTGGCGGAGGGCACCGAACCTTCGGCCTTGCAAACACAAGTCGTGC
GGCGTCGGAGCCCGTCGTCAAGGccctcctcattctcctcctccttcgcg
acAACGTCTTCCGAGACTGCGGCCGCTCCCAGCAAACTcacgctccttct
cttcgcggcctccatcctcttcctcttcgcggACCAAAACCTGCTGGCCC
CGAATCTGACGGCCGTGGCCAGGGACATGGGCTTTGACGACGCTGAGCGC
GATCTGAAACTCGGAGGGCAGATTCCCTTCGCTTTTTttgtggtgggagg
ggcggtctCGATCGTGGTGGGTCCGATGGCGGACGTCATGAACCGAAAAA
CCCTGTACGTCTGCACGTGCTTAGTGGGCAtcatcccctgcctcctcacc
tACTGGGTGGTCAGCTTTAACcagttcttcctcctccggacCCTGACGGG
CgtggccgtgggcggggcCTTTCCGCTCATCTACTCCCTGGCCGCCGACA
TCACCACCCCGGATCAGCGCGCCctagcctcctccctcatcacgaTCAGC
ATGGGCGTTGGCGGCACCTTAGGCCagggcgtggcgggcttCGTGGGCCC
GGTCTATGGCTGGCGCATGCCCTTCGTCATAATTgcactgccctccctgc
tcgtgATCGCGCTAGTCATGCTGACCATGGAGGagccccccccgctctcA
TCATATCGGttcggtggaggggaggggacccCGAGGCGCAAGCGAAGCCC
TCCTGATTCGCccagaggaggcaggagaggcggcggacgaggaatgggga
gaggagaggggggaggaggaaaatcgtga back to top
|