EWM29137.1, cds1552 (CDS) Nannochloropsis gaditana

Overview
NameEWM29137.1
Unique Namecds1552
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:925568..926746 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29137.1
Productmajor facilitator superfamily
Orig transcript idgnl|cribi|Naga_100007g17.6464.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:925568..926746 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
GO:0055085transmembrane transport
Vocabulary: Molecular Function
TermDefinition
GO:0005215transporter activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0016021integral component of membrane
Vocabulary: INTERPRO
TermDefinition
IPR020846MFS_dom
IPR011701MFS
Homology
BLAST of EWM29137.1 vs. NCBI_GenBank
Match: gi|585111657|gb|EWM29137.1| (major facilitator superfamily [Nannochloropsis gaditana])

HSP 1 Score: 784.252 bits (2024), Expect = 0.000e+0
Identity = 392/392 (100.00%), Postives = 392/392 (100.00%), Query Frame = 0
Query:    1 MVKTYNTLSGPFSSHGEETPAGTPSSLPKHHLHQFPSSEALTDETEFPLPSPFTPADYKSMAMEMAYLTPRRKGPASDRRLGLSVSGGGVDPSLSFQPEPRTSDASPSYTVDHEERSLLAEGTEPSALQTQVVRRRSPSSRPSSFSSSFATTSSETAAAPSKLTLLLFAASILFLFADQNLLAPNLTAVARDMGFDDAERDLKLGGQIPFAFFVVGGAVSIVVGPMADVMNRKTLYVCTCLVGIIPCLLTYWVVSFNQFFLLRTLTGVAVGGAFPLIYSLAADITTPDQRALASSLITISMGVGGTLGQGVAGFVGPVYGWRMPFVIIALPSLLVIALVMLTMEEPPPLSSYRFGGGEGTPRRKRSPPDSPRGGRRGGGRGMGRGEGGGGKS 392
            MVKTYNTLSGPFSSHGEETPAGTPSSLPKHHLHQFPSSEALTDETEFPLPSPFTPADYKSMAMEMAYLTPRRKGPASDRRLGLSVSGGGVDPSLSFQPEPRTSDASPSYTVDHEERSLLAEGTEPSALQTQVVRRRSPSSRPSSFSSSFATTSSETAAAPSKLTLLLFAASILFLFADQNLLAPNLTAVARDMGFDDAERDLKLGGQIPFAFFVVGGAVSIVVGPMADVMNRKTLYVCTCLVGIIPCLLTYWVVSFNQFFLLRTLTGVAVGGAFPLIYSLAADITTPDQRALASSLITISMGVGGTLGQGVAGFVGPVYGWRMPFVIIALPSLLVIALVMLTMEEPPPLSSYRFGGGEGTPRRKRSPPDSPRGGRRGGGRGMGRGEGGGGKS
Sbjct:    1 MVKTYNTLSGPFSSHGEETPAGTPSSLPKHHLHQFPSSEALTDETEFPLPSPFTPADYKSMAMEMAYLTPRRKGPASDRRLGLSVSGGGVDPSLSFQPEPRTSDASPSYTVDHEERSLLAEGTEPSALQTQVVRRRSPSSRPSSFSSSFATTSSETAAAPSKLTLLLFAASILFLFADQNLLAPNLTAVARDMGFDDAERDLKLGGQIPFAFFVVGGAVSIVVGPMADVMNRKTLYVCTCLVGIIPCLLTYWVVSFNQFFLLRTLTGVAVGGAFPLIYSLAADITTPDQRALASSLITISMGVGGTLGQGVAGFVGPVYGWRMPFVIIALPSLLVIALVMLTMEEPPPLSSYRFGGGEGTPRRKRSPPDSPRGGRRGGGRGMGRGEGGGGKS 392          
BLAST of EWM29137.1 vs. NCBI_GenBank
Match: gi|1101098999|gb|OIO58015.1| (hypothetical protein AUJ47_11900 [Candidatus Marinimicrobia bacterium CG1_02_48_14])

HSP 1 Score: 199.904 bits (507), Expect = 4.555e-56
Identity = 92/186 (49.46%), Postives = 130/186 (69.89%), Query Frame = 0
Query:  161 SKLTLLLFAASILFLFADQNLLAPNLTAVARDMGFDDAERDLKLGGQIPFAFFVVGGAVSIVVGPMADVMNRKTLYVCTCLVGIIPCLLTYWVVSFNQFFLLRTLTGVAVGGAFPLIYSLAADITTPDQRALASSLITISMGVGGTLGQGVAGFVGPVYGWRMPFVIIALPSLLVIALVMLTMEEP 346
             +  + L A   LFLFADQNL+APNLT +A D GFD  ERD+KLGG I F F+V GG +++ +G + D ++RK L+V   LVG IPCLLT +  ++NQ F LR LTG+ +GGA PL+YSL  D  +P  R  A++ + +SMG+G  LGQ +AGF+GP +GWR+PF+++A+P+ ++  +   TM EP
Sbjct:   11 ERFAIALLAIITLFLFADQNLMAPNLTQIANDFGFDAVERDVKLGGNISFVFWVFGGLITLGIGYLTDRISRKVLFVIVILVGEIPCLLTGFAQTYNQLFWLRALTGIGIGGALPLVYSLLGDYFSPKMRTAATAYMALSMGIGIALGQLLAGFIGPSHGWRLPFILVAVPNFVLAVIFWFTMREP 196          
BLAST of EWM29137.1 vs. NCBI_GenBank
Match: gi|1072222645|gb|OEU07405.1| (MFS family transporter: metabolite [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 190.66 bits (483), Expect = 1.110e-52
Identity = 86/185 (46.49%), Postives = 132/185 (71.35%), Query Frame = 0
Query:  162 KLTLLLFAASILFLFADQNLLAPNLTAVARDMGFDDAERDLKLGGQIPFAFFVVGGAVSIVVGPMADVMNRKTLYVCTCLVGIIPCLLTYWVVSFNQFFLLRTLTGVAVGGAFPLIYSLAADITTPDQRALASSLITISMGVGGTLGQGVAGFVGPVYGWRMPFVIIALPSLLVIALVMLTMEEP 346
            +  L LF+ + + LFADQNL++PNLT +A +   DD ERD KLGG I  AFF++G   S VVG +AD  +R  ++  T  +G + C LTY+V S+NQ ++ R +TG ++GGA P+IYS+  D+ + + R + S++++I MG G ++GQGVAGF+GP+YGWR+PF++I++P+L   ALV  T+++P
Sbjct:   18 RWALGLFSITTVLLFADQNLMSPNLTTIADEFDMDDEERDRKLGGDISLAFFLLGAPASFVVGMLADTQDRSKVFGWTVFIGEMACFLTYFVRSYNQLYICRAVTGFSIGGALPVIYSVLGDLYSAEDRHVVSAIVSIGMGAGISVGQGVAGFLGPIYGWRLPFLVISVPALFCAALVFFTVKDP 202          
BLAST of EWM29137.1 vs. NCBI_GenBank
Match: gi|303275492|ref|XP_003057040.1| (major facilitator superfamily [Micromonas pusilla CCMP1545] >gi|226461392|gb|EEH58685.1| major facilitator superfamily [Micromonas pusilla CCMP1545])

HSP 1 Score: 191.045 bits (484), Expect = 4.448e-52
Identity = 114/239 (47.70%), Postives = 146/239 (61.09%), Query Frame = 0
Query:  136 RSPSSRPSSFSSSFATTSSETAAAPSKLTLLLFAASILFLFADQNLLAPNLTAVARDMGFDDAERDLKLGGQIPFAFFVVGGAVSIVVGPMADVMNRKTLYVCTCLVGIIPCLLTYWVVSFNQFFLLRTLTGVAVGGAFPLIYSLAADITTPDQRALASSLITISMGVGGTLGQGVAGFVGPVYGWRMPFVIIALPSLLVIALVMLTMEEPPPLSSYRFGGGEGTPRRKRSPPDSPRGG 374
            R  S RP    S FA+  +E A   S    LL  A++  +FADQNLLAPNL+A+A D+GFD+ ERD KLGGQI  AFF++G    +V+G + DV  RK L V T ++G  PC L  +V SF Q F+LR LTGVAVGGA PL +S+A D+  P  R+ AS  + + M  G   GQGV+G+ GP++GWR PFV++A+P L V  LV     EP      R GG +G      SP  SP GG
Sbjct:    3 RVVSKRPRD-RSLFASPLAECADPTS---FLLLCAAVFCIFADQNLLAPNLSAIADDLGFDERERDAKLGGQISVAFFLLGLPACLVIGVLTDVARRKDLLVMTVVLGQGPCALAGFVTSFWQLFVLRALTGVAVGGALPLAFSIAGDLFPPTARSHASGTVGLVMHAGVIFGQGVSGYAGPIFGWRAPFVLVAIPGLCVAWLVDKYAVEP------RRGGSDGG---GASPSASPGGG 228          
BLAST of EWM29137.1 vs. NCBI_GenBank
Match: gi|1210518994|dbj|GAX22155.1| (hypothetical protein FisN_39Lh023 [Fistulifera solaris])

HSP 1 Score: 191.815 bits (486), Expect = 7.892e-52
Identity = 96/231 (41.56%), Postives = 142/231 (61.47%), Query Frame = 0
Query:  118 LLAEGTEPSALQTQVVRRRS--PSSRPSSFSSSFATTSSETAAAPSKLTLLLFAASILFLFADQNLLAPNLTAVARDMGFDDAERDLKLGGQIPFAFFVVGGAVSIVVGPMADVMNRKTLYVCTCLVGIIPCLLTYWVVSFNQFFLLRTLTGVAVGGAFPLIYSLAADITTPDQRALASSLITISMGVGGTLGQGVAGFVGPVYGWRMPFVIIALPSLLVIALVMLTMEEP 346
            L A+  E     +Q + + S   SS+ SS     +  S   ++      L LF+   + LFADQNL++PNLTA+A++  FDD +RD KLGG+I  AFFV+G   S +VG + D  NR  L+  T  +G + C+LTYWV +++Q +L R +TG +VGGA PLIYS+  D+   D+R    +L+ I  G G +LGQ +AGF+GP +GWR+PF++I LP++     V L + +P
Sbjct:   21 LFAQHDESMQKISQTLGKESLATSSQYSSLEPRLSGPSRVPSSMDKARALALFSVCTILLFADQNLMSPNLTAIAKEFNFDDEQRDKKLGGEIALAFFVLGAPASYLVGCLGDAYNRTKLFAVTVCIGELGCILTYWVQTYSQLYLCRAVTGFSVGGALPLIYSILGDLFPSDERHRVGALVGIGTGAGISLGQCIAGFLGPTFGWRLPFLVIGLPAVFCALAVWLFVPDP 251          
BLAST of EWM29137.1 vs. NCBI_GenBank
Match: gi|693496816|emb|CEG01728.1| (Major facilitator superfamily domain, general substrate transporter [Ostreococcus tauri] >gi|1199294085|gb|OUS49166.1| putative permease [Ostreococcus tauri])

HSP 1 Score: 187.193 bits (474), Expect = 6.137e-51
Identity = 95/212 (44.81%), Postives = 134/212 (63.21%), Query Frame = 0
Query:  160 PSKLTLLLFAASILFLFADQNLLAPNLTAVARDMGFDDAERDLKLGGQIPFAFFVVGGAVSIVVGPMADVMNRKTLYVCTCLVGIIPCLLTYWVVSFNQFFLLRTLTGVAVGGAFPLIYSLAADITTPDQRALASSLITISMGVGGTLGQGVAGFVGPVYGWRMPFVIIALPSLLVIALVMLTMEEPPPLSSYRFGGGEGTPRRK-RSPPDS 370
            P  + + L   + LFL+ADQNL+APN++A+ARD    D E+D+KLGG +  AFFVVG   S+VVG  AD   R  L+  T L+G  PCL TYWV ++ Q F LR  TGVAVGG  PL++SL  D+ +  +R+  +S +TI+ G G  LGQ ++G VGP YGWR+PF++ ++P++    +++L ++EP      R    E   RR  R PP S
Sbjct:   21 PRAVVVALITLTSLFLYADQNLIAPNMSAIARDFNMSDEEKDVKLGGLLQLAFFVVGSPASLVVGYYADRAARVRLFFWTTLIGEGPCLATYWVKTYWQLFALRACTGVAVGGCLPLLFSLCGDLFSASERSYVASFLTIATGAGIALGQLISGTVGPAYGWRLPFILTSVPAIFFATVMLLYVDEPK-----RGAQEEEVHRRSIRRPPAS 227          
BLAST of EWM29137.1 vs. NCBI_GenBank
Match: gi|1210517924|dbj|GAX23181.1| (hypothetical protein FisN_39Hh023 [Fistulifera solaris])

HSP 1 Score: 189.119 bits (479), Expect = 9.960e-51
Identity = 89/200 (44.50%), Postives = 132/200 (66.00%), Query Frame = 0
Query:  147 SSFATTSSETAAAPSKLTLLLFAASILFLFADQNLLAPNLTAVARDMGFDDAERDLKLGGQIPFAFFVVGGAVSIVVGPMADVMNRKTLYVCTCLVGIIPCLLTYWVVSFNQFFLLRTLTGVAVGGAFPLIYSLAADITTPDQRALASSLITISMGVGGTLGQGVAGFVGPVYGWRMPFVIIALPSLLVIALVMLTMEEP 346
            SS+  +S + A A +     LF+   + LFADQNL++PNLTA+A++  FDD +RD KLGG+I  AFFV+G   S +VG + D  NR  L+  T  +G + C+LTYWV +++Q ++ R +TG +VGGA PLIYS+  D+   D+R    +L+ I  G G +LGQ +AGF+GP +GWR+PF++I LP++     V L + +P
Sbjct:   72 SSYVPSSMDKARAVA-----LFSVCTILLFADQNLMSPNLTAIAKEFNFDDEQRDKKLGGEIALAFFVLGAPASYLVGCLGDAYNRTKLFAATVCIGELGCILTYWVQTYSQLYVCRAITGFSVGGALPLIYSILGDLFPSDERHRVGALVGIGTGAGISLGQCIAGFLGPTFGWRLPFLVIGLPAVFCALAVWLFVPDP 266          
BLAST of EWM29137.1 vs. NCBI_GenBank
Match: gi|145354267|ref|XP_001421412.1| (MFS family transporter: sugar [Ostreococcus lucimarinus CCE9901] >gi|144581649|gb|ABO99705.1| MFS family transporter: sugar [Ostreococcus lucimarinus CCE9901])

HSP 1 Score: 186.037 bits (471), Expect = 2.029e-50
Identity = 84/180 (46.67%), Postives = 126/180 (70.00%), Query Frame = 0
Query:  167 LFAASILFLFADQNLLAPNLTAVARDMGFDDAERDLKLGGQIPFAFFVVGGAVSIVVGPMADVMNRKTLYVCTCLVGIIPCLLTYWVVSFNQFFLLRTLTGVAVGGAFPLIYSLAADITTPDQRALASSLITISMGVGGTLGQGVAGFVGPVYGWRMPFVIIALPSLLVIALVMLTMEEP 346
            L  A+ LFL+ADQNL+ PN++A+A + G D+ E+D+KLGG +  AFFVVG   S+++G  AD + R  L+  T L+G  PC+ TYWV S+ Q F LR +TG+AVGG  PL++SL  D+    +R+  +S +TI+ G G  LGQ VAG VGP YGWR+PF++ + P++++  +++L ++EP
Sbjct:   48 LITATSLFLYADQNLIGPNMSAIAEEFGMDEKEKDVKLGGLLQLAFFVVGSPASLIIGYYADRVRRVRLFFWTTLIGEGPCMATYWVTSYWQLFALRAMTGIAVGGCLPLLFSLCGDLFASHERSYVASFLTIATGAGVALGQVVAGTVGPAYGWRLPFILTSAPAVVLATVMVLVVDEP 227          
BLAST of EWM29137.1 vs. NCBI_GenBank
Match: gi|1199294109|gb|OUS49190.1| (putative esterase [Ostreococcus tauri])

HSP 1 Score: 189.504 bits (480), Expect = 4.444e-50
Identity = 98/251 (39.04%), Postives = 146/251 (58.17%), Query Frame = 0
Query:  133 VRRRSPSSRPSSFSSSFATTSSETAAAPSKLTLLLFAASILFLFADQNLLAPNLTAVARDMGFDDAERDLKLGGQIPFAFFVVGGAVSIVVGPMADVMNRKTLYVCTCLVGIIPCLLTYWVVSFNQFFLLRTLTGVAVGGAFPLIYSLAADITTPDQRALASSLITISMGVGGTLGQGVAGFVGPVYGWRMPFVIIALPSLLVIALVMLTMEEPPPLSSYRFGGGEGTPRRK---RSPPDSPRGGRRGGGR 380
            +R R    + SS + SF   ++        +T  +    +  +FADQNLLAPNLTA+A D+G D+ ERD KLGGQI FAFF++G   S+++G +AD  +R  L+  T L+G  P  L  WV +F + + LR LTG+AVGGA PL YSL++D+    +R   S++  ++M +G   GQ  +GF+G  YGWR+PFV++A+P + V  ++M  +EEP   +       E +   +   RS P +P    R   R
Sbjct:    1 MRSRRTQIKRSSSAQSFNFWTNPRRNRTMHVTFAVMCLGLALVFADQNLLAPNLTAIANDLGLDEKERDYKLGGQIAFAFFLLGAPASVLIGSLADYYSRTRLFAWTMLLGSCPNALAIWVTTFRELYWLRALTGIAVGGAAPLTYSLSSDLFDSTERTKMSAVTGLAMTLGVVFGQATSGFLGEKYGWRVPFVVVAIPGMCVAIVLMFFVEEPKRGAMESIEDEEHSQHHESLVRSRPTTPSIAERPSAR 251          
BLAST of EWM29137.1 vs. NCBI_GenBank
Match: gi|308811943|ref|XP_003083279.1| (putative esterase (ISS) [Ostreococcus tauri])

HSP 1 Score: 189.119 bits (479), Expect = 5.114e-50
Identity = 98/251 (39.04%), Postives = 146/251 (58.17%), Query Frame = 0
Query:  133 VRRRSPSSRPSSFSSSFATTSSETAAAPSKLTLLLFAASILFLFADQNLLAPNLTAVARDMGFDDAERDLKLGGQIPFAFFVVGGAVSIVVGPMADVMNRKTLYVCTCLVGIIPCLLTYWVVSFNQFFLLRTLTGVAVGGAFPLIYSLAADITTPDQRALASSLITISMGVGGTLGQGVAGFVGPVYGWRMPFVIIALPSLLVIALVMLTMEEPPPLSSYRFGGGEGTPRRK---RSPPDSPRGGRRGGGR 380
            +R R    + SS + SF   ++        +T  +    +  +FADQNLLAPNLTA+A D+G D+ ERD KLGGQI FAFF++G   S+++G +AD  +R  L+  T L+G  P  L  WV +F + + LR LTG+AVGGA PL YSL++D+    +R   S++  ++M +G   GQ  +GF+G  YGWR+PFV++A+P + V  ++M  +EEP   +       E +   +   RS P +P    R   R
Sbjct:    1 MRSRRTQIKRSSSAQSFDFWTNPRRNRTMHVTFAVMCLGLALVFADQNLLAPNLTAIANDLGLDEKERDYKLGGQIAFAFFLLGAPASVLIGSLADYYSRTRLFAWTMLLGSCPNALAIWVTTFRELYWLRALTGIAVGGAAPLTYSLSSDLFDSTERTKMSAVTGLAMTLGVVFGQATSGFLGEKYGWRVPFVVVAIPGMCVAIVLMFFVEEPKRGAMESIEDEEHSQHHESLVRSRPTTPSIAERPSAR 251          
The following BLAST results are available for this feature:
BLAST of EWM29137.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111657|gb|EWM29137.1|0.000e+0100.00major facilitator superfamily [Nannochloropsis gad... [more]
gi|1101098999|gb|OIO58015.1|4.555e-5649.46hypothetical protein AUJ47_11900 [Candidatus Marin... [more]
gi|1072222645|gb|OEU07405.1|1.110e-5246.49MFS family transporter: metabolite [Fragilariopsis... [more]
gi|303275492|ref|XP_003057040.1|4.448e-5247.70major facilitator superfamily [Micromonas pusilla ... [more]
gi|1210518994|dbj|GAX22155.1|7.892e-5241.56hypothetical protein FisN_39Lh023 [Fistulifera sol... [more]
gi|693496816|emb|CEG01728.1|6.137e-5144.81Major facilitator superfamily domain, general subs... [more]
gi|1210517924|dbj|GAX23181.1|9.960e-5144.50hypothetical protein FisN_39Hh023 [Fistulifera sol... [more]
gi|145354267|ref|XP_001421412.1|2.029e-5046.67MFS family transporter: sugar [Ostreococcus lucima... [more]
gi|1199294109|gb|OUS49190.1|4.444e-5039.04putative esterase [Ostreococcus tauri][more]
gi|308811943|ref|XP_003083279.1|5.114e-5039.04putative esterase (ISS) [Ostreococcus tauri][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1556rna1556Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications