rna1555, rna1555 (mRNA) Nannochloropsis gaditana

Overview
Namerna1555
Unique Namerna1555
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1464
Alignment locationCM002457.1:923602..925414 +

Link to JBrowse

Properties
Property NameValue
Productprotein kinase c binding protein
Orig transcript idgnl|cribi|Naga_100007g18.6533.mrna
Orig protein idgnl|cribi|Naga_100007g18.6533
GbkeymRNA
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:923602..925414 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100007g18gene1497Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1555rna1555-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29206.1cds1551Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1555 ID=rna1555|Name=rna1555|organism=Nannochloropsis gaditana|type=mRNA|length=1464bp
TGTACAGAGATAACGTGACATTGTTGGTGGGAACGTGTGAGGAGGGAGGT
TATCCGAGGGGAGGTCGAGATAAGCCATAAGATAACAAGCAGAGTCAGCT
CATAAGTCTTGAACTCTGATCATGTTATGAACGTGACTGGCCGTCCATAT
GTATCGTCCAAGCTCTCTTATGCAATACTTTGGCATAAACTACGTCGCGG
CGCGGCGTCAGCACTTGTAGCACTACTGATTATTACCTGGTACCTCAGTG
AAAGCAGCTCTCAGCAGGCGATGGAGAAGTAATTATGGGGAATTCACCAG
CAAAACATAAGACTTGACACCCACGTACACACGCACAGAGATATTGTCCA
CGTGGTCTGCATCATTTGCGTTCCGTGTGGCGTGCAGTGAGCTCACGGCC
TTGCCTGCTCTATGAGCCAACGTCTTGTCCGCCTCTCTCAACACTTGCTG
GTACATCGTACGTCCTTGCACGCAACTTCCATCGCAGTCAGATTATCTCG
CACGACTAGACGGTGTCTTGTCACCGGTAACCAGGCAAATACCATGGCTG
ATGAGGTAGCCGAGTCCAGGAAAGCGGCAGCCAAAAAGATGGAGGAGGCA
GCGGATGCGGGCGAGCCGACAGTCTTCGACAAGATCGTAAAGAAAGAAAT
CCCCTCAAACTTCATCTACGAAGACGACGACTGCGTAGCCTTTCATGACT
TGAGTCCGCAAGGGCCCGTTCATTTCTTGGTTATCCCCAAGGACAGGGCC
GGTTTGTCTCGCCTAAGCAAAGCGGAAGAGAGCCACAAGGCCTTGCTAGG
CCATTTGTTGTACGTTGCGCAGCAGGTTGCGAAACAGGAAGGTTTAGTCC
CAGGTGGTTTCCGAGTGGTCATCAATGACGGTCCCGACGGGAGTCAGTCT
GTTTATCATTTGCATATCCACGTTATTGGTGGGCGACAGAATATGTGTAC
TCCCGCCTCACACTTGCACAGATGGGATGGCCGCCTGGATGATCTACAGC
TCATATTTTCTGCGTGTCCAGATCTGCATTGTCGTTATTTGGGGTGTCTT
CGTACTCTGGAATGATGAGGTGTATGAGCTATATCATGCTGTGTTGAGTA
ACGGGTGAAGGGTTTTGGGTAAAGAGGTTTCGAAGCTTACATGATTGGCA
AAAATCTAAAGAAGATTAAAAAGTTGTGCAAATTCAGCAAAGCTTGTGCT
GTTCATTTATACAATTGTATCGTAGCCAACACGTGTGGGTCTCGGTGCGA
TATTCGAGCTCGCCTCCCGTCATGAGTATGCCCAACGGCCCATTCAAAAA
GACGTTGAGCGCGGCTGCTTCCTCACCAGCAGCCGGGTGCGACAGTGTAA
TTGTCCAAAGCAAACTTCATTGGCAGTGCGTAGCTTGGAGATACAAATCC
TTTTCCTGTGTGTATTTAGCATCACGATTCCCTTCTCTGATCGTCCCTTT
TTGAAGTACACTGC
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protein sequence of rna1555

>rna1555-protein ID=rna1555-protein|Name=rna1555|organism=Nannochloropsis gaditana|type=polypeptide|length=182bp
MSQRLVRLSQHLLVHRTSLHATSIAVRLSRTTRRCLVTGNQANTMADEVA
ESRKAAAKKMEEAADAGEPTVFDKIVKKEIPSNFIYEDDDCVAFHDLSPQ
GPVHFLVIPKDRAGLSRLSKAEESHKALLGHLLYVAQQVAKQEGLVPGGF
RVVINDGPDGSQSVYHLHIHVIGGRQMGWPPG
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mRNA from alignment at CM002457.1:923602..925414+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1555 ID=rna1555|Name=rna1555|organism=Nannochloropsis gaditana|type=mRNA|length=1813bp|location=Sequence derived from alignment at CM002457.1:923602..925414+ (Nannochloropsis gaditana)
TGTACAGAGATAACGTGACATTGTTGGTGGGAACgtgtgaggagggaggt
tatCCGAGGGGAGGTCGAGATAAGCCATAAGATAACAAGCAGAGTCAGCT
CATAAGTCTTGAACTCTGATCATGTTATGAACGTGACTGGCCGTCCATAT
GTATCGTCCAAGCTCTCTTATGCAATACTTTGGCATAAACTACGTCGCGG
CGCGGCGTCAGCACTTGTAGCACTACTGATTATTACCTGGTACCTCAGTG
AAAGCAGCTCTCAGCAGGCGATGGAGAAGTAATTATGGGGAATTCACCAG
CAAAACATAAGACTTGACACCCACGTACACACGCACAGAGATATTGTCCA
CGTGGTCTGCATCATTTGCGTTCCGTGTGGCGTGCAGTGAGCTCACGGCC
TTGCCTGCTCTATGAGCCAACGTCTTGTCCGCCTCTCTCAACACTTGCTG
GTACATCGTACGTCCTTGCACGCAACTTCCATCGCAGTCAGATTATCTCG
CACGACTAGACGGTGTCTTGTCACCGGTAACCAGGCAAATACCATGGCTG
ATGAGGTAGCCGAGTCCAGGAAAGCGGCAGCcaaaaagatggaggaggca
gcggatGCGGGCGAGGTAGGTGGTAGAGAGCTCGTAAGAACAAGGTCATG
GTTTTTAAAAGTCGCATGGGGCATTTGTGCTTTCGTCGTACGATGCGGTT
GACGTCAAGTGCTCAGAAATTTTAAAAACTTATCTCTTGGACGGAGAACC
ATCACGATCGTGTCGTGACGAACGTATGCGTGCAGCACATTTTATATTGT
TTCTCCAACATGACAACGTATGGCAACATCTCCGGAAGTCGTTATTCTAT
TTCACTGACTACCCGGCTTCTGCCTTTTCGATTTCGTTTTTACAGCCGAC
AGTCTTCGACAAGATCGTAAAGAAAGAAATCCCCTCAAACTTCATCTACG
AAGACGACGACTGCGTAGCCTTTCATGACTTGAGTCCGCAAGGGCCCGTT
CATTTCTTGGTTATCCCCAAGGACAGGGCCGGTTTGTCTCGCCTAAGCAA
AGCGGAAGAGAGCCACAAGGCCTTGCTAGGCCATTTGTTGTACGTTGCGC
AGCAGGTTGCGAAACAGGAAGGTTTAGTCCCAGGTGGTTTCCGAGTGGTC
ATCAATGACGGTCCCGACGGGAGTCAGTCTGTTTATCATTTGCATATCCA
CGTTATTGGTGGGCGACAGGTGGGTActtttcattttcctcctgaaTTAA
TAGAGAGTAATGAATATGTTTACGTTACGCGCTTACAGAATATGTGTACT
CCCGCCTCACACTTGCACAGATGGGATGGCCGCCTGGATGATCTACAGCT
CATATTTTCTGCGTGTCCAGATCTGCATTGTCGTTATTTGGGGTGTCTTC
GTACTCTGGAATGATGAGGTGTATGAGCTATATCATGCTGTGTTGAGTAA
CGGGTGAAGGGTTTTGGGTAAAGAGGTTTCGAAGCTTACATGATTGGCAA
AAATCTAAAGAAGATTAAAAAGTTGTGCAAATTCAGCAAAGCTTGTGCTG
TTCATTTATACAATTGTATCGTAGCCAACACGTGTGGGTCTCGGTGCGAT
ATTCGAGCTCGCCTCCCGTCATGAGTATGCCCAACGGCCCATTCAAAAAG
ACGTTGAGCGCGGCTGCTTCCTCACCAGCAGCCGGGTGCGACAGTGTAAT
TGTCCAAAGCAAACTTCATTGGCAGTGCGTAGCTTGGAGATACAAATCCT
TTTCCTGTGTGTATTTAGCATCACGATTCCCTTCTCTGATCGTCCCTTTT
TGAAGTACACTGC
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Coding sequence (CDS) from alignment at CM002457.1:923602..925414+

>rna1555 ID=rna1555|Name=rna1555|organism=Nannochloropsis gaditana|type=CDS|length=1647bp|location=Sequence derived from alignment at CM002457.1:923602..925414+ (Nannochloropsis gaditana)
ATGAGCCAACGTCTTGTCCGCCTCTCTCAACACTTGCTGGTACATCGTAC
GTCCTTGCACGCAACTTCCATCGCAGTCAGATTATCTCGCACGACTAGAC
GGTGTCTTGTCACCGGTAACCAGGCAAATACCATGGCTGATGAGGTAGCC
GAGTCCAGGAAAGCGGCAGCcaaaaagatggaggaggcagcggatGCGGG
CGAGCCGACAGTCTTCGACAAGATCGTAAAGAAAGAAATCCCCTCAAACT
TCATCTACGAAGACGACGACTGCGTAGCCTTTCATGACTTGAGTCCGCAA
GGGCCCGTTCATTTCTTGGTTATCCCCAAGGACAGGGCCGGTTTGTCTCG
CCTAAGCAAAGCGGAAGAGAGCCACAAGGCCTTGCTAGGCCATTTGTTGT
ACGTTGCGCAGCAGGTTGCGAAACAGGAAGGTTTAGTCCCAGGTGGTTTC
CGAGTGGTCATCAATGACGGTCCCGACGGGAGTCAGTCTGTTTATCATTT
GCATATCCACGTTATTGGTGGGCGACAGATGGGATGGCCGCCTGGATGAA
TGAGCCAACGTCTTGTCCGCCTCTCTCAACACTTGCTGGTACATCGTACG
TCCTTGCACGCAACTTCCATCGCAGTCAGATTATCTCGCACGACTAGACG
GTGTCTTGTCACCGGTAACCAGGCAAATACCATGGCTGATGAGGTAGCCG
AGTCCAGGAAAGCGGCAGCcaaaaagatggaggaggcagcggatGCGGGC
GAGCCGACAGTCTTCGACAAGATCGTAAAGAAAGAAATCCCCTCAAACTT
CATCTACGAAGACGACGACTGCGTAGCCTTTCATGACTTGAGTCCGCAAG
GGCCCGTTCATTTCTTGGTTATCCCCAAGGACAGGGCCGGTTTGTCTCGC
CTAAGCAAAGCGGAAGAGAGCCACAAGGCCTTGCTAGGCCATTTGTTGTA
CGTTGCGCAGCAGGTTGCGAAACAGGAAGGTTTAGTCCCAGGTGGTTTCC
GAGTGGTCATCAATGACGGTCCCGACGGGAGTCAGTCTGTTTATCATTTG
CATATCCACGTTATTGGTGGGCGACAGATGGGATGGCCGCCTGGATGAAT
GAGCCAACGTCTTGTCCGCCTCTCTCAACACTTGCTGGTACATCGTACGT
CCTTGCACGCAACTTCCATCGCAGTCAGATTATCTCGCACGACTAGACGG
TGTCTTGTCACCGGTAACCAGGCAAATACCATGGCTGATGAGGTAGCCGA
GTCCAGGAAAGCGGCAGCcaaaaagatggaggaggcagcggatGCGGGCG
AGCCGACAGTCTTCGACAAGATCGTAAAGAAAGAAATCCCCTCAAACTTC
ATCTACGAAGACGACGACTGCGTAGCCTTTCATGACTTGAGTCCGCAAGG
GCCCGTTCATTTCTTGGTTATCCCCAAGGACAGGGCCGGTTTGTCTCGCC
TAAGCAAAGCGGAAGAGAGCCACAAGGCCTTGCTAGGCCATTTGTTGTAC
GTTGCGCAGCAGGTTGCGAAACAGGAAGGTTTAGTCCCAGGTGGTTTCCG
AGTGGTCATCAATGACGGTCCCGACGGGAGTCAGTCTGTTTATCATTTGC
ATATCCACGTTATTGGTGGGCGACAGATGGGATGGCCGCCTGGATGA
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Synonyms
Publications