EWM29206.1, cds1551 (CDS) Nannochloropsis gaditana

Overview
NameEWM29206.1
Unique Namecds1551
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:924013..924216 +
Alignment locationCM002457.1:924497..924820 +
Alignment locationCM002457.1:924922..924942 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29206.1
Productprotein kinase c binding protein
Orig transcript idgnl|cribi|Naga_100007g18.6533.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:924013..924216 +
CM002457.1supercontigCM002457.1:924497..924820 +
CM002457.1supercontigCM002457.1:924922..924942 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016301kinase activity
GO:0003824catalytic activity
Vocabulary: INTERPRO
TermDefinition
IPR019808Histidine_triad_CS
IPR011146HIT-like
IPR001310Histidine_triad_HIT
Homology
BLAST of EWM29206.1 vs. NCBI_GenBank
Match: gi|585111726|gb|EWM29206.1| (protein kinase c binding protein [Nannochloropsis gaditana])

HSP 1 Score: 377.096 bits (967), Expect = 1.708e-132
Identity = 182/182 (100.00%), Postives = 182/182 (100.00%), Query Frame = 0
Query:    1 MSQRLVRLSQHLLVHRTSLHATSIAVRLSRTTRRCLVTGNQANTMADEVAESRKAAAKKMEEAADAGEPTVFDKIVKKEIPSNFIYEDDDCVAFHDLSPQGPVHFLVIPKDRAGLSRLSKAEESHKALLGHLLYVAQQVAKQEGLVPGGFRVVINDGPDGSQSVYHLHIHVIGGRQMGWPPG 182
            MSQRLVRLSQHLLVHRTSLHATSIAVRLSRTTRRCLVTGNQANTMADEVAESRKAAAKKMEEAADAGEPTVFDKIVKKEIPSNFIYEDDDCVAFHDLSPQGPVHFLVIPKDRAGLSRLSKAEESHKALLGHLLYVAQQVAKQEGLVPGGFRVVINDGPDGSQSVYHLHIHVIGGRQMGWPPG
Sbjct:    1 MSQRLVRLSQHLLVHRTSLHATSIAVRLSRTTRRCLVTGNQANTMADEVAESRKAAAKKMEEAADAGEPTVFDKIVKKEIPSNFIYEDDDCVAFHDLSPQGPVHFLVIPKDRAGLSRLSKAEESHKALLGHLLYVAQQVAKQEGLVPGGFRVVINDGPDGSQSVYHLHIHVIGGRQMGWPPG 182          
BLAST of EWM29206.1 vs. NCBI_GenBank
Match: gi|585111725|gb|EWM29205.1| (protein kinase c binding protein [Nannochloropsis gaditana])

HSP 1 Score: 359.377 bits (921), Expect = 6.738e-125
Identity = 177/182 (97.25%), Postives = 177/182 (97.25%), Query Frame = 0
Query:    1 MSQRLVRLSQHLLVHRTSLHATSIAVRLSRTTRRCLVTGNQANTMADEVAESRKAAAKKMEEAADAGEPTVFDKIVKKEIPSNFIYEDDDCVAFHDLSPQGPVHFLVIPKDRAGLSRLSKAEESHKALLGHLLYVAQQVAKQEGLVPGGFRVVINDGPDGSQSVYHLHIHVIGGRQMGWPPG 182
            MSQRLVRLSQHLLVHRTSLHATSIAVRLSRTTRRCLVTGNQANTMADEVAESRKAAAKKMEEAADAGEPTVFDKIVKKEIPSNFIYEDDDCVAFHDLSPQGPVHFLVIPKDRAGLSRLSKAEESHKALLGHLLYVAQQVAKQEGLVPGGFRVVINDGPDGSQSVYHLHIHVIGGRQ    P 
Sbjct:    1 MSQRLVRLSQHLLVHRTSLHATSIAVRLSRTTRRCLVTGNQANTMADEVAESRKAAAKKMEEAADAGEPTVFDKIVKKEIPSNFIYEDDDCVAFHDLSPQGPVHFLVIPKDRAGLSRLSKAEESHKALLGHLLYVAQQVAKQEGLVPGGFRVVINDGPDGSQSVYHLHIHVIGGRQNMCTPA 182          
BLAST of EWM29206.1 vs. NCBI_GenBank
Match: gi|552847308|ref|XP_005851832.1| (hypothetical protein CHLNCDRAFT_133322 [Chlorella variabilis] >gi|307111496|gb|EFN59730.1| hypothetical protein CHLNCDRAFT_133322 [Chlorella variabilis])

HSP 1 Score: 185.652 bits (470), Expect = 1.766e-57
Identity = 85/118 (72.03%), Postives = 99/118 (83.90%), Query Frame = 0
Query:   65 DAGEPTVFDKIVKKEIPSNFIYEDDDCVAFHDLSPQGPVHFLVIPKDRAGLSRLSKAEESHKALLGHLLYVAQQVAKQEGLVPGGFRVVINDGPDGSQSVYHLHIHVIGGRQMGWPPG 182
            D G PT+FDKI+ K+IP+  IYED+  +AF D+SPQGPVHFLVIPK R GL++LSKA+E HK LLGHLLYVA QVAKQEGL   G+RV INDGP+G QSVYHLH+H+IGGRQM WPPG
Sbjct:   16 DTGAPTIFDKIIAKQIPAQIIYEDEQALAFRDISPQGPVHFLVIPKVRNGLTQLSKAKEEHKPLLGHLLYVAAQVAKQEGLS-QGYRVAINDGPNGCQSVYHLHLHIIGGRQMSWPPG 132          
BLAST of EWM29206.1 vs. NCBI_GenBank
Match: gi|255084700|ref|XP_002504781.1| (predicted protein [Micromonas commoda] >gi|226520050|gb|ACO66039.1| predicted protein [Micromonas commoda])

HSP 1 Score: 182.185 bits (461), Expect = 2.870e-56
Identity = 84/119 (70.59%), Postives = 101/119 (84.87%), Query Frame = 0
Query:   64 ADAGEPTVFDKIVKKEIPSNFIYEDDDCVAFHDLSPQGPVHFLVIPKDRAGLSRLSKAEESHKALLGHLLYVAQQVAKQEGLVPGGFRVVINDGPDGSQSVYHLHIHVIGGRQMGWPPG 182
            A++GEPT+FDKI+ KEIPS+ IYED+ C+AF D++PQ   HFLVIPK R+GL++LSKAEE HK LLGHLLY AQ+VAKQE L   GFRVVINDG +G QSVYHLHIHV+GG+Q+ WPPG
Sbjct:    2 ANSGEPTIFDKIIAKEIPSDVIYEDNLCLAFRDIAPQAKTHFLVIPKIRSGLTQLSKAEEGHKELLGHLLYTAQKVAKQEKL-DKGFRVVINDGVEGCQSVYHLHIHVVGGQQLSWPPG 119          
BLAST of EWM29206.1 vs. NCBI_GenBank
Match: gi|1200531145|gb|OUW43830.1| (histidine triad nucleotide-binding protein [bacterium TMED181])

HSP 1 Score: 179.874 bits (455), Expect = 2.397e-55
Identity = 83/119 (69.75%), Postives = 100/119 (84.03%), Query Frame = 0
Query:   64 ADAGEPTVFDKIVKKEIPSNFIYEDDDCVAFHDLSPQGPVHFLVIPKDRAGLSRLSKAEESHKALLGHLLYVAQQVAKQEGLVPGGFRVVINDGPDGSQSVYHLHIHVIGGRQMGWPPG 182
            A++GE T+FDKI+ KEIPS+ IYED+ C+AF D++PQ   HFLVIPK R+GL++LSKAEE HK LLGHLLY AQ+VAKQE L   GFRVVINDG +G QSVYHLHIHV+GG+Q+ WPPG
Sbjct:    2 ANSGEATIFDKIIAKEIPSDIIYEDNLCLAFRDIAPQAKTHFLVIPKIRSGLTQLSKAEEGHKELLGHLLYTAQKVAKQEKL-DQGFRVVINDGVEGCQSVYHLHIHVVGGQQLSWPPG 119          
BLAST of EWM29206.1 vs. NCBI_GenBank
Match: gi|325180399|emb|CCA14803.1| (14 kDa zincbinding protein putative [Albugo laibachii Nc14])

HSP 1 Score: 181.415 bits (459), Expect = 3.886e-55
Identity = 93/184 (50.54%), Postives = 125/184 (67.93%), Query Frame = 0
Query:    4 RLVRLSQHLLVHRTSLHATS-IAVRLSRTTRRCLVTGNQA--NTMADEVAESRKAAAKKMEEAADAGEP--TVFDKIVKKEIPSNFIYEDDDCVAFHDLSPQGPVHFLVIPKDRAGLSRLSKAEESHKALLGHLLYVAQQVAKQEGLVPGGFRVVINDGPDGSQSVYHLHIHVIGGRQMGWPPG 182
            RL+R ++H     +SLH       R +   R    T  +     M+ + +E  KA A    E A  G+P  T+FDKI++KEIP+   +ED+ C+AFHD+ PQ PVH L+IPK+  GLS+LS AEE HK +LGHL+YVA++VA+ +GL   GFR+VINDGPDG QSVYHLHIH++GGR++GWPPG
Sbjct:    2 RLIRFAEHAT---SSLHGCRRFRNRFNFENRSVFSTPLKLYHRGMSSQTSEREKADAAA--ELAGTGKPKVTIFDKIIRKEIPAKIAFEDEMCLAFHDVQPQAPVHILIIPKNSDGLSQLSAAEERHKPILGHLMYVARKVAQDQGLA-NGFRIVINDGPDGCQSVYHLHIHLLGGRKLGWPPG 179          
BLAST of EWM29206.1 vs. NCBI_GenBank
Match: gi|1004144108|gb|KXZ52089.1| (hypothetical protein GPECTOR_10g1112 [Gonium pectorale])

HSP 1 Score: 179.489 bits (454), Expect = 4.720e-55
Identity = 83/118 (70.34%), Postives = 97/118 (82.20%), Query Frame = 0
Query:   65 DAGEPTVFDKIVKKEIPSNFIYEDDDCVAFHDLSPQGPVHFLVIPKDRAGLSRLSKAEESHKALLGHLLYVAQQVAKQEGLVPGGFRVVINDGPDGSQSVYHLHIHVIGGRQMGWPPG 182
            D   PT+FDKIV K+IP+  IYEDD  +AF D+SPQ PVHFLVIPK+R+GL+RLSKA E HKALLGHLL+VAQ+VA  E L   GFRV INDGP+G QSVYHLH+HV+GGRQ+ WPPG
Sbjct:   17 DQDPPTIFDKIVAKQIPATIIYEDDQALAFRDISPQAPVHFLVIPKNRSGLTRLSKATEEHKALLGHLLFVAQKVAMAENLGE-GFRVTINDGPNGCQSVYHLHLHVMGGRQLTWPPG 133          
BLAST of EWM29206.1 vs. NCBI_GenBank
Match: gi|303283059|ref|XP_003060821.1| (predicted protein [Micromonas pusilla CCMP1545] >gi|226458292|gb|EEH55590.1| predicted protein [Micromonas pusilla CCMP1545])

HSP 1 Score: 178.333 bits (451), Expect = 1.157e-54
Identity = 83/118 (70.34%), Postives = 98/118 (83.05%), Query Frame = 0
Query:   65 DAGEPTVFDKIVKKEIPSNFIYEDDDCVAFHDLSPQGPVHFLVIPKDRAGLSRLSKAEESHKALLGHLLYVAQQVAKQEGLVPGGFRVVINDGPDGSQSVYHLHIHVIGGRQMGWPPG 182
            ++GEPT+FDKIV KEIP+  IYED+ C+AF D++PQ   HFLVIPK RAGL+RLS AEE HKALLGHLL+ AQ+VAK EGL   GFRVVINDG  G QSVYHLH+HV+GG+Q+ WPPG
Sbjct:    3 NSGEPTIFDKIVAKEIPATVIYEDNLCLAFRDVAPQAKTHFLVIPKIRAGLTRLSNAEEEHKALLGHLLFTAQRVAKDEGLGE-GFRVVINDGVQGCQSVYHLHLHVLGGQQLTWPPG 119          
BLAST of EWM29206.1 vs. NCBI_GenBank
Match: gi|159476202|ref|XP_001696200.1| (protein kinase C binding protein [Chlamydomonas reinhardtii] >gi|158282425|gb|EDP08177.1| protein kinase C binding protein [Chlamydomonas reinhardtii])

HSP 1 Score: 177.563 bits (449), Expect = 2.630e-54
Identity = 81/118 (68.64%), Postives = 96/118 (81.36%), Query Frame = 0
Query:   65 DAGEPTVFDKIVKKEIPSNFIYEDDDCVAFHDLSPQGPVHFLVIPKDRAGLSRLSKAEESHKALLGHLLYVAQQVAKQEGLVPGGFRVVINDGPDGSQSVYHLHIHVIGGRQMGWPPG 182
            D   PT+FDKIV KEIP+N IYEDD+ +AF D+ PQ PVHFLVIPK R GL+RLSKA   HKALLGHL++VAQ VA +E L   GFRVV+NDGP+G QSVYHLH+H++GGRQ+ WPPG
Sbjct:   16 DTEPPTIFDKIVSKEIPANIIYEDDEALAFRDIQPQAPVHFLVIPKKRNGLTRLSKASPEHKALLGHLMWVAQHVAMKENLG-DGFRVVVNDGPNGCQSVYHLHLHIMGGRQLTWPPG 132          
BLAST of EWM29206.1 vs. NCBI_GenBank
Match: gi|116792646|gb|ABK26444.1| (unknown [Picea sitchensis] >gi|148910222|gb|ABR18192.1| unknown [Picea sitchensis] >gi|224284605|gb|ACN40035.1| unknown [Picea sitchensis])

HSP 1 Score: 178.718 bits (452), Expect = 2.803e-54
Identity = 89/157 (56.69%), Postives = 112/157 (71.34%), Query Frame = 0
Query:   26 VRLSRTTRRCLVTGNQANTMADEVAESRKAAAKKMEEAADAGEPTVFDKIVKKEIPSNFIYEDDDCVAFHDLSPQGPVHFLVIPKDRAGLSRLSKAEESHKALLGHLLYVAQQVAKQEGLVPGGFRVVINDGPDGSQSVYHLHIHVIGGRQMGWPPG 182
            +RL        VT NQA+ MA E     K AA  +    D G+PT+FDKI++KEIPS  +YED+  +AF D++PQ P H ++IPK R GL+ LS+AEE H+ +LGHLLY A+ +AKQEGL   GFR+VINDGP G QSVYHLHIH++GGRQM WPPG
Sbjct:   11 LRLKVLGSHLGVTFNQAHHMASE-----KEAA--LAATPDDGKPTIFDKILQKEIPSTVVYEDEKVLAFRDIAPQAPTHIIIIPKVRDGLTGLSQAEERHEDILGHLLYTAKVIAKQEGL-SDGFRIVINDGPSGCQSVYHLHIHLLGGRQMNWPPG 159          
The following BLAST results are available for this feature:
BLAST of EWM29206.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111726|gb|EWM29206.1|1.708e-132100.00protein kinase c binding protein [Nannochloropsis ... [more]
gi|585111725|gb|EWM29205.1|6.738e-12597.25protein kinase c binding protein [Nannochloropsis ... [more]
gi|552847308|ref|XP_005851832.1|1.766e-5772.03hypothetical protein CHLNCDRAFT_133322 [Chlorella ... [more]
gi|255084700|ref|XP_002504781.1|2.870e-5670.59predicted protein [Micromonas commoda] >gi|2265200... [more]
gi|1200531145|gb|OUW43830.1|2.397e-5569.75histidine triad nucleotide-binding protein [bacter... [more]
gi|325180399|emb|CCA14803.1|3.886e-5550.5414 kDa zincbinding protein putative [Albugo laibac... [more]
gi|1004144108|gb|KXZ52089.1|4.720e-5570.34hypothetical protein GPECTOR_10g1112 [Gonium pecto... [more]
gi|303283059|ref|XP_003060821.1|1.157e-5470.34predicted protein [Micromonas pusilla CCMP1545] >g... [more]
gi|159476202|ref|XP_001696200.1|2.630e-5468.64protein kinase C binding protein [Chlamydomonas re... [more]
gi|116792646|gb|ABK26444.1|2.803e-5456.69unknown [Picea sitchensis] >gi|148910222|gb|ABR181... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1555rna1555Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications