rna1553, rna1553 (mRNA) Nannochloropsis gaditana

Overview
Namerna1553
Unique Namerna1553
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2635
Alignment locationCM002457.1:923063..923581 -

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Properties
Property NameValue
ProductCytochrome c oxidase assembly protein COX16
Orig transcript idgnl|cribi|Naga_100007g19.6460.mrna
Orig protein idgnl|cribi|Naga_100007g19.6460
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:923063..923581 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100007g19gene1496Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1553rna1553-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29133.1cds1549Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1553 ID=rna1553|Name=rna1553|organism=Nannochloropsis gaditana|type=mRNA|length=2635bp
TAAGGATCAGCATGGCATATCCTCGTGCAAAATTCCACATTTCGACCAAA
CTTTTTTTAGGTTTGGATTTCTGTTGTGGACCGGAGTGTTCTTGAGTGAA
TGCTCCATATTATCCGATACTGGAATTTTCTTTTGGTTGCTTTTGTCAGG
TGTTTGTCCTGTATTAGCGAGTGTCAGGGGTTGCGGGTTATAGAAGAAAG
TCGGGAGGGAGATAGTTCGCCTTGTTTTGTATATCCGGCACATGAACTTT
CATGTCGTGATATTTAGCGTGATTGACTGAACAAACCAAGATAGAAAATT
GAAAATTTCAAAACTTCAAAGTCGGTGACGTTACCCTACCTTAGATTCTT
GGAGTAGTATTAAGTATGACACACTCAACATCCTATAATACTAGACGATT
GTTTGGACACGGTCCTATCGTCCATATCTATGCCTTTCTTGTTTATATTT
GCGAACGAACGCGTGTTGTTCCAGTGAGCCTTTTCAATCAAATCTACTCA
ACGCATTCAGATAAGGACAAGGAAGCACGGGCCATCTCGATGAGCATGCC
TTCCTTGGCTGATGCATATGGCTTGAAGTACTGGAGAAAGTATTTCCCGT
AAAGAGGAACTCTAAAGTGAGTGTAAATATATTCTGCTTACCGTGGACAA
TTTACGATACACACTCCCAACGGGTACATTCACATCTGGCACACACAGTT
CCGAAGGAACAAGGATGGGACCAGACGTCTCTTTAGGATGTCGTGCGACT
TGCCAAAACGCCAAAAATCTAAGTTGCAGTCATTGTGTCAGCGCCACTAT
CGCACAAGAAGCTGTTAAAGCTTTGACAACTATGGATGTTCAGAATCTTG
ACCTACAGTTAGATTCTCGGACAGAAGCCTTGCACCTCAAGATCGAGAAC
CATAAACGCAGCACTTTGAAGCAGACCGCAGTACCATCCCAAGCCTTTAT
ACACGAGCAACCGACAGGGGCCTCTGTTGGTTCCATGCTGCGTGAAGGAG
CACCATGTGCAGAAGTAAAGGAGGAAAGCCTGAAGGATGTTGGGGTGGAA
GGTGGAGATGAGAAGGGGGACTCGCAATACCTAGTTAAGGGCCGGACGCA
AGGCTTGCGGCTAGCTGAGTGTGAGATAATACCGTCGGGTGGGGAGGCGC
AAAGCGGAAACGAAAAACCAGGAGTCGCATCCTTTGAGACGCAAATAGAG
ATTGGTAAACTAGCGAAAGTGGATAATCATGTGTCGGGGAACAGCACTCG
GAAAGATTTGGCACTTGAGAGGGCGCTCAGTCATTCTATGACAGTCGCTC
TTCACCACAAATCTACCGACAGTCCCGCTACGAAACATCATCAGTCCGCT
TTTACACACGTGCATGCTACAGACGTGACGCTTGACGGCATTGCCTTTTC
ATTCCAAGAATTCGCACCGACGATCTTTTTCTCAATCCGAGGGCATTTTG
GTGTTGACCATGACGCATATGTGCATTCAATGTCGGAATTGAGGACCGGA
CACACCGGAGAAGGGAAAAGCGGCATGCTCTTCTTCTCGAGCGCTGACGG
ACGCTTGATCGTGAAGACCGTGACAGGGGACGAGACCAAGTTGTTGGACC
GAGATCTCAAGTCGTACTACGACTACATGGTGGTGAATGGGGCTACCTCT
CTTTTGCCTCGTTTTATGGGGCTCTACTTGTTGAAACTGCCCGATAAGCC
CCTCGTTCGCATGCTTGTGATGAACAACGTCCTTAAGCTGCCCCGTGCGA
CGAAGCTGACGTCGTCCATTGAATTGTCCGAAATCTACGACTTAAAAGGC
TCGCTCCATATGCGTCTCGTTGGGGCGGAGGAGCAGGCCCTGGGCGAGGT
GACCGTCTTGAAAGACCTAAACTTCTGCAGCCGACATGCTGGTACGGATC
ATCACGGCCATTCCTTCCCTGGCATCGAGGGGCCTTGTCGAAGGGTGTAT
CTGGGCCCGATTCGAAAGATTGAGCTGCTTGCGAATTTACAGTCCGACGT
GGAGTGGCTGAAGCAGCATAATATCATGGATTACTCCCTCTTGCTCGCTG
TGGGCTTCGAGGTCTCACCAGATGGAGGCCTTATAGCTCCTCCGGTAAAG
CCAGCCGATCCGGTCGGTACGCTTGCCGTGGTCGAGGACCCCTGCGTGGG
AGCGGGCCACCCGCAGATGGCGGCAAGCCAAGAAGTGCCGGGTGGACAGC
AAGGAGAGAGGCGGAGTAGGGGGACGGACGGAGGGAGGTGGGAATCAGCG
TGGAGTACGGACATGGGAGGGGTCCGAGGGATGAACGGAGACTTCACCCC
GAGGGCGGAGATCTACTACATGGGGCTAATCGACGTCTTGCAGGAATACA
ACGCCAAGAAACGGGCGGAGCATGCCTTGAAGTCCATAACGGCTGACTCG
AGCAAGATCTCCTCGGTGGATCCTTCCTTCTATGCCGAGCGCTTTCTGGA
TTGGTTGCAGACTCACGTTGGCTAGGCTAGCGTTGTAACCATGTAGACTT
TCCGGTCTCGGGACACGCAAGGAAGTGCTGGAGAGCCTCAGATTTTAGAG
GGCATTACACAAGCGCTAAAACTGCCCGGGGAGACGCCATGATTTTACAT
GGAGTGTAAATAATTATAAAGATCTACTGATCGTC
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protein sequence of rna1553

>rna1553-protein ID=rna1553-protein|Name=rna1553|organism=Nannochloropsis gaditana|type=polypeptide|length=80bp
MISHRAWKKLSAGLPLLVFLTGGSLFLAKFVQGRVEAKDSKLQSRSEREF
SIEEEHKRMMAKLDPENAYKVVRIHRPEDD
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mRNA from alignment at CM002457.1:923063..923581-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1553 ID=rna1553|Name=rna1553|organism=Nannochloropsis gaditana|type=mRNA|length=519bp|location=Sequence derived from alignment at CM002457.1:923063..923581- (Nannochloropsis gaditana)
ATGATATCTCATCGAGCATGGAAAAAATTGAGCGCTGGCTTGCCGTTGCT
CGTCTTTTTGACAGGTGGTTCTCTCTTCTTGGCCAAGGTGAATAATATGA
TTGAGTCCCCCTGTCCCCAGGGCCTAGCAGAGCAAGTGTGTGCACTTTTC
CCTTGGATCGAACGTCTTACCACATTTCAAGACCCATCTTATGTTTAGTT
GAGAGTATATGTACATTTTCCCTGTCTAGAGTGCCCTTCTTCCCGCGAAT
CACGTAGCAGCGTGTCACAACCCCTTTTTCATTTCCAGCCTTTTGAGTTC
AACAGCGACTTCCAAGTCCATAATTTGTTAACAGATCTCGAATTCCCATT
TTTAAATGAGTAGTTTGTACAGGGTCGGGTGGAGGCCAAAGATAGCAAGC
TGCAAAGTCGTAGTGAAAGGGAGTTCAGTATTGAGGAGGAACACAAACGA
ATGATGGCCAAACTAGATCCAGAGAACGCCTACAAGGTGGTTCGTATCCA
TCGGCCAGAGGATGACTGA
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Coding sequence (CDS) from alignment at CM002457.1:923063..923581-

>rna1553 ID=rna1553|Name=rna1553|organism=Nannochloropsis gaditana|type=CDS|length=486bp|location=Sequence derived from alignment at CM002457.1:923063..923581- (Nannochloropsis gaditana)
TTTGTACAGGGTCGGGTGGAGGCCAAAGATAGCAAGCTGCAAAGTCGTAG
TGAAAGGGAGTTCAGTATTGAGGAGGAACACAAACGAATGATGGCCAAAC
TAGATCCAGAGAACGCCTACAAGGTGGTTCGTATCCATCGGCCAGAGGAT
GACTGAATGATATCTCATCGAGCATGGAAAAAATTGAGCGCTGGCTTGCC
GTTGCTCGTCTTTTTGACAGGTGGTTCTCTCTTCTTGGCCAAGTTTGTAC
AGGGTCGGGTGGAGGCCAAAGATAGCAAGCTGCAAAGTCGTAGTGAAAGG
GAGTTCAGTATTGAGGAGGAACACAAACGAATGATGGCCAAACTAGATCC
AGAGAACGCCTACAAGGTGGTTCGTATCCATCGGCCAGAGGATGACTGAA
TGATATCTCATCGAGCATGGAAAAAATTGAGCGCTGGCTTGCCGTTGCTC
GTCTTTTTGACAGGTGGTTCTCTCTTCTTGGCCAAG
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Synonyms
Publications