EWM29133.1, cds1549 (CDS) Nannochloropsis gaditana

Overview
NameEWM29133.1
Unique Namecds1549
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:923495..923581 -
Alignment locationCM002457.1:923063..923218 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM29133.1
ProductCytochrome c oxidase assembly protein COX16
Orig transcript idgnl|cribi|Naga_100007g19.6460.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:923495..923581 -
CM002457.1supercontigCM002457.1:923063..923218 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0005739mitochondrion
GO:0031966mitochondrial membrane
Vocabulary: INTERPRO
TermDefinition
IPR020164Cyt_c_Oxase_assmbl_COX16
Homology
BLAST of EWM29133.1 vs. NCBI_GenBank
Match: gi|585111653|gb|EWM29133.1| (Cytochrome c oxidase assembly protein COX16 [Nannochloropsis gaditana])

HSP 1 Score: 164.466 bits (415), Expect = 1.533e-51
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0
Query:    1 MISHRAWKKLSAGLPLLVFLTGGSLFLAKFVQGRVEAKDSKLQSRSEREFSIEEEHKRMMAKLDPENAYKVVRIHRPEDD 80
            MISHRAWKKLSAGLPLLVFLTGGSLFLAKFVQGRVEAKDSKLQSRSEREFSIEEEHKRMMAKLDPENAYKVVRIHRPEDD
Sbjct:    1 MISHRAWKKLSAGLPLLVFLTGGSLFLAKFVQGRVEAKDSKLQSRSEREFSIEEEHKRMMAKLDPENAYKVVRIHRPEDD 80          
BLAST of EWM29133.1 vs. NCBI_GenBank
Match: gi|301123143|ref|XP_002909298.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262100060|gb|EEY58112.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 63.1586 bits (152), Expect = 2.643e-11
Identity = 29/70 (41.43%), Postives = 52/70 (74.29%), Query Frame = 0
Query:   11 SAGLPLLVFLTGGSLFLAKFVQGRVEAKDSKLQSRSEREFSIEEEHKRMMAKLDPENAYKVVRIHRPEDD 80
            +AGLPL++F+ GG + L +FV G+ EA+D  ++S+SE  F++EEEHK+M  KL  ++ +++  + +P++D
Sbjct:   30 TAGLPLVLFIVGGYVALTQFVGGKYEARDHMVKSQSEHLFNLEEEHKKMTKKLTLDD-FEIKPVPKPKED 98          
BLAST of EWM29133.1 vs. NCBI_GenBank
Match: gi|953486498|emb|CEG49401.1| (cytochrome c oxidase assembly protein cox16 [Plasmopara halstedii])

HSP 1 Score: 62.3882 bits (150), Expect = 4.647e-11
Identity = 29/69 (42.03%), Postives = 51/69 (73.91%), Query Frame = 0
Query:   11 SAGLPLLVFLTGGSLFLAKFVQGRVEAKDSKLQSRSEREFSIEEEHKRMMAKLDPENAYKVVRIHRPED 79
            +AGLPL++F+ GG + L +FV G+ EA+D  ++S+SE  F++EEEHK+M  KL  ++ +++  + +P+D
Sbjct:   26 TAGLPLVLFIVGGYVALTQFVGGKYEARDHMVKSQSEHTFNLEEEHKKMTQKLALDD-FELKPVPKPKD 93          
BLAST of EWM29133.1 vs. NCBI_GenBank
Match: gi|675184601|ref|XP_008901185.1| (hypothetical protein PPTG_08036 [Phytophthora parasitica INRA-310] >gi|566030105|gb|ETI53016.1| hypothetical protein F443_03985 [Phytophthora parasitica P1569] >gi|567967696|gb|ETK92865.1| hypothetical protein L915_03874 [Phytophthora parasitica] >gi|567996164|gb|ETL46286.1| hypothetical protein L916_03815 [Phytophthora parasitica] >gi|568025419|gb|ETL99433.1| hypothetical protein L917_03725 [Phytophthora parasitica] >gi|568055846|gb|ETM52583.1| hypothetical protein L914_03833 [Phytophthora parasitica] >gi|568098380|gb|ETN13107.1| hypothetical protein PPTG_08036 [Phytophthora parasitica INRA-310] >gi|570333760|gb|ETO81708.1| hypothetical protein F444_04046 [Phytophthora parasitica P1976] >gi|570957834|gb|ETP22813.1| hypothetical protein F441_03971 [Phytophthora parasitica CJ01A1] >gi|570993457|gb|ETP50807.1| hypothetical protein F442_03971 [Phytophthora parasitica P10297])

HSP 1 Score: 62.3882 bits (150), Expect = 5.054e-11
Identity = 30/69 (43.48%), Postives = 51/69 (73.91%), Query Frame = 0
Query:   11 SAGLPLLVFLTGGSLFLAKFVQGRVEAKDSKLQSRSEREFSIEEEHKRMMAKLDPENAYKVVRIHRPED 79
            +AGLPL++F+ GG + L +FV G+ EA+D  ++S+SE  F++EEEHKRM  KL  ++ +++  + +P+D
Sbjct:   30 TAGLPLVLFIVGGYVALTQFVGGKYEARDHLVKSQSEHLFNLEEEHKRMTKKLALDD-FELKPVPKPKD 97          
BLAST of EWM29133.1 vs. NCBI_GenBank
Match: gi|695425759|ref|XP_009529253.1| (hypothetical protein PHYSODRAFT_546257 [Phytophthora sojae] >gi|348675686|gb|EGZ15504.1| hypothetical protein PHYSODRAFT_546257 [Phytophthora sojae])

HSP 1 Score: 63.5438 bits (153), Expect = 4.316e-10
Identity = 31/69 (44.93%), Postives = 51/69 (73.91%), Query Frame = 0
Query:   11 SAGLPLLVFLTGGSLFLAKFVQGRVEAKDSKLQSRSEREFSIEEEHKRMMAKLDPENAYKVVRIHRPED 79
            +AGLPL++F+ GG + L +FV G+ EA+D  ++S+SE  F++EEEHKRM  KL  ++ +++  + +PED
Sbjct:  283 TAGLPLVLFIVGGYVALTQFVGGKYEARDHLVKSQSEHMFNLEEEHKRMTKKLQLDD-FELKPVPKPED 350          
BLAST of EWM29133.1 vs. NCBI_GenBank
Match: gi|1173933831|gb|OQR85404.1| (hypothetical protein ACHHYP_11886 [Achlya hypogyna])

HSP 1 Score: 59.6918 bits (143), Expect = 5.077e-10
Identity = 28/71 (39.44%), Postives = 48/71 (67.61%), Query Frame = 0
Query:   10 LSAGLPLLVFLTGGSLFLAKFVQGRVEAKDSKLQSRSEREFSIEEEHKRMMAKLDPENAYKVVRIHRPEDD 80
            +  GLP ++F+ GG   L  FV GR E +D  ++S+SER F+++EEH+++M KL  ++ +++ RI  P +D
Sbjct:   19 VRVGLPFVIFVVGGFTGLQSFVGGRFERRDMLVKSQSERAFNLDEEHRKIMQKLKVDD-FEIKRIPNPGED 88          
BLAST of EWM29133.1 vs. NCBI_GenBank
Match: gi|698810930|ref|XP_009838494.1| (hypothetical protein H257_12848 [Aphanomyces astaci] >gi|574106534|gb|ETV72051.1| hypothetical protein H257_12848 [Aphanomyces astaci])

HSP 1 Score: 59.3066 bits (142), Expect = 7.898e-10
Identity = 26/71 (36.62%), Postives = 49/71 (69.01%), Query Frame = 0
Query:   10 LSAGLPLLVFLTGGSLFLAKFVQGRVEAKDSKLQSRSEREFSIEEEHKRMMAKLDPENAYKVVRIHRPEDD 80
            ++ G+P ++F+ GG   L +F+ G++E KD  ++S+SER F+++EEH+++M KL+  +   + RI  P +D
Sbjct:   16 VNVGMPFVLFVVGGFTVLNQFLDGKMEKKDVMVKSQSERAFNLDEEHRKIMQKLNTTDLV-IKRIPAPGED 85          
BLAST of EWM29133.1 vs. NCBI_GenBank
Match: gi|669165368|ref|XP_008618246.1| (hypothetical protein SDRG_13923 [Saprolegnia diclina VS20] >gi|813127311|ref|XP_012197305.1| hypothetical protein SPRG_03338 [Saprolegnia parasitica CBS 223.65] >gi|530730134|gb|EQC28376.1| hypothetical protein SDRG_13923 [Saprolegnia diclina VS20] >gi|641538286|gb|KDO32120.1| hypothetical protein SPRG_03338 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 58.9214 bits (141), Expect = 9.370e-10
Identity = 27/69 (39.13%), Postives = 47/69 (68.12%), Query Frame = 0
Query:   12 AGLPLLVFLTGGSLFLAKFVQGRVEAKDSKLQSRSEREFSIEEEHKRMMAKLDPENAYKVVRIHRPEDD 80
             GLP ++F+ GG   L  FV G+ E +D  ++S+SER F+++EEH+++M KL  ++ +++ RI  P +D
Sbjct:   13 VGLPFVIFVVGGFAGLQNFVGGKFERRDMMVKSQSERAFNLDEEHRKIMHKLKTDD-FEIKRIPNPGED 80          
BLAST of EWM29133.1 vs. NCBI_GenBank
Match: gi|1214711969|gb|OWZ22941.1| (hypothetical protein PHMEG_0002270 [Phytophthora megakarya])

HSP 1 Score: 62.003 bits (149), Expect = 1.779e-9
Identity = 28/53 (52.83%), Postives = 41/53 (77.36%), Query Frame = 0
Query:   11 SAGLPLLVFLTGGSLFLAKFVQGRVEAKDSKLQSRSEREFSIEEEHKRMMAKL 63
            +AGLPL++F+ GG + L +FV G+ EA+D  ++S+SE  F++EEEHKRM  KL
Sbjct: 1383 TAGLPLVLFIVGGYVALTQFVGGKFEARDHMVKSQSEHMFNLEEEHKRMSKKL 1435          
BLAST of EWM29133.1 vs. NCBI_GenBank
Match: gi|970616108|gb|KUF64319.1| (hypothetical protein AM587_10008661 [Phytophthora nicotianae])

HSP 1 Score: 61.6178 bits (148), Expect = 2.822e-9
Identity = 28/53 (52.83%), Postives = 41/53 (77.36%), Query Frame = 0
Query:   11 SAGLPLLVFLTGGSLFLAKFVQGRVEAKDSKLQSRSEREFSIEEEHKRMMAKL 63
            +AGLPL++F+ GG + L +FV G+ EA+D  ++S+SE  F++EEEHKRM  KL
Sbjct: 1598 TAGLPLVLFIVGGYVALTQFVGGKYEARDHLVKSQSEHLFNLEEEHKRMTKKL 1650          
The following BLAST results are available for this feature:
BLAST of EWM29133.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111653|gb|EWM29133.1|1.533e-51100.00Cytochrome c oxidase assembly protein COX16 [Nanno... [more]
gi|301123143|ref|XP_002909298.1|2.643e-1141.43conserved hypothetical protein [Phytophthora infes... [more]
gi|953486498|emb|CEG49401.1|4.647e-1142.03cytochrome c oxidase assembly protein cox16 [Plasm... [more]
gi|675184601|ref|XP_008901185.1|5.054e-1143.48hypothetical protein PPTG_08036 [Phytophthora para... [more]
gi|695425759|ref|XP_009529253.1|4.316e-1044.93hypothetical protein PHYSODRAFT_546257 [Phytophtho... [more]
gi|1173933831|gb|OQR85404.1|5.077e-1039.44hypothetical protein ACHHYP_11886 [Achlya hypogyna... [more]
gi|698810930|ref|XP_009838494.1|7.898e-1036.62hypothetical protein H257_12848 [Aphanomyces astac... [more]
gi|669165368|ref|XP_008618246.1|9.370e-1039.13hypothetical protein SDRG_13923 [Saprolegnia dicli... [more]
gi|1214711969|gb|OWZ22941.1|1.779e-952.83hypothetical protein PHMEG_0002270 [Phytophthora m... [more]
gi|970616108|gb|KUF64319.1|2.822e-952.83hypothetical protein AM587_10008661 [Phytophthora ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1553rna1553Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications