EWM29133.1, cds1549 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29133.1 vs. NCBI_GenBank
Match: gi|585111653|gb|EWM29133.1| (Cytochrome c oxidase assembly protein COX16 [Nannochloropsis gaditana]) HSP 1 Score: 164.466 bits (415), Expect = 1.533e-51 Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0
Query: 1 MISHRAWKKLSAGLPLLVFLTGGSLFLAKFVQGRVEAKDSKLQSRSEREFSIEEEHKRMMAKLDPENAYKVVRIHRPEDD 80
MISHRAWKKLSAGLPLLVFLTGGSLFLAKFVQGRVEAKDSKLQSRSEREFSIEEEHKRMMAKLDPENAYKVVRIHRPEDD
Sbjct: 1 MISHRAWKKLSAGLPLLVFLTGGSLFLAKFVQGRVEAKDSKLQSRSEREFSIEEEHKRMMAKLDPENAYKVVRIHRPEDD 80
BLAST of EWM29133.1 vs. NCBI_GenBank
Match: gi|301123143|ref|XP_002909298.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262100060|gb|EEY58112.1| conserved hypothetical protein [Phytophthora infestans T30-4]) HSP 1 Score: 63.1586 bits (152), Expect = 2.643e-11 Identity = 29/70 (41.43%), Postives = 52/70 (74.29%), Query Frame = 0
Query: 11 SAGLPLLVFLTGGSLFLAKFVQGRVEAKDSKLQSRSEREFSIEEEHKRMMAKLDPENAYKVVRIHRPEDD 80
+AGLPL++F+ GG + L +FV G+ EA+D ++S+SE F++EEEHK+M KL ++ +++ + +P++D
Sbjct: 30 TAGLPLVLFIVGGYVALTQFVGGKYEARDHMVKSQSEHLFNLEEEHKKMTKKLTLDD-FEIKPVPKPKED 98
BLAST of EWM29133.1 vs. NCBI_GenBank
Match: gi|953486498|emb|CEG49401.1| (cytochrome c oxidase assembly protein cox16 [Plasmopara halstedii]) HSP 1 Score: 62.3882 bits (150), Expect = 4.647e-11 Identity = 29/69 (42.03%), Postives = 51/69 (73.91%), Query Frame = 0
Query: 11 SAGLPLLVFLTGGSLFLAKFVQGRVEAKDSKLQSRSEREFSIEEEHKRMMAKLDPENAYKVVRIHRPED 79
+AGLPL++F+ GG + L +FV G+ EA+D ++S+SE F++EEEHK+M KL ++ +++ + +P+D
Sbjct: 26 TAGLPLVLFIVGGYVALTQFVGGKYEARDHMVKSQSEHTFNLEEEHKKMTQKLALDD-FELKPVPKPKD 93
BLAST of EWM29133.1 vs. NCBI_GenBank
Match: gi|675184601|ref|XP_008901185.1| (hypothetical protein PPTG_08036 [Phytophthora parasitica INRA-310] >gi|566030105|gb|ETI53016.1| hypothetical protein F443_03985 [Phytophthora parasitica P1569] >gi|567967696|gb|ETK92865.1| hypothetical protein L915_03874 [Phytophthora parasitica] >gi|567996164|gb|ETL46286.1| hypothetical protein L916_03815 [Phytophthora parasitica] >gi|568025419|gb|ETL99433.1| hypothetical protein L917_03725 [Phytophthora parasitica] >gi|568055846|gb|ETM52583.1| hypothetical protein L914_03833 [Phytophthora parasitica] >gi|568098380|gb|ETN13107.1| hypothetical protein PPTG_08036 [Phytophthora parasitica INRA-310] >gi|570333760|gb|ETO81708.1| hypothetical protein F444_04046 [Phytophthora parasitica P1976] >gi|570957834|gb|ETP22813.1| hypothetical protein F441_03971 [Phytophthora parasitica CJ01A1] >gi|570993457|gb|ETP50807.1| hypothetical protein F442_03971 [Phytophthora parasitica P10297]) HSP 1 Score: 62.3882 bits (150), Expect = 5.054e-11 Identity = 30/69 (43.48%), Postives = 51/69 (73.91%), Query Frame = 0
Query: 11 SAGLPLLVFLTGGSLFLAKFVQGRVEAKDSKLQSRSEREFSIEEEHKRMMAKLDPENAYKVVRIHRPED 79
+AGLPL++F+ GG + L +FV G+ EA+D ++S+SE F++EEEHKRM KL ++ +++ + +P+D
Sbjct: 30 TAGLPLVLFIVGGYVALTQFVGGKYEARDHLVKSQSEHLFNLEEEHKRMTKKLALDD-FELKPVPKPKD 97
BLAST of EWM29133.1 vs. NCBI_GenBank
Match: gi|695425759|ref|XP_009529253.1| (hypothetical protein PHYSODRAFT_546257 [Phytophthora sojae] >gi|348675686|gb|EGZ15504.1| hypothetical protein PHYSODRAFT_546257 [Phytophthora sojae]) HSP 1 Score: 63.5438 bits (153), Expect = 4.316e-10 Identity = 31/69 (44.93%), Postives = 51/69 (73.91%), Query Frame = 0
Query: 11 SAGLPLLVFLTGGSLFLAKFVQGRVEAKDSKLQSRSEREFSIEEEHKRMMAKLDPENAYKVVRIHRPED 79
+AGLPL++F+ GG + L +FV G+ EA+D ++S+SE F++EEEHKRM KL ++ +++ + +PED
Sbjct: 283 TAGLPLVLFIVGGYVALTQFVGGKYEARDHLVKSQSEHMFNLEEEHKRMTKKLQLDD-FELKPVPKPED 350
BLAST of EWM29133.1 vs. NCBI_GenBank
Match: gi|1173933831|gb|OQR85404.1| (hypothetical protein ACHHYP_11886 [Achlya hypogyna]) HSP 1 Score: 59.6918 bits (143), Expect = 5.077e-10 Identity = 28/71 (39.44%), Postives = 48/71 (67.61%), Query Frame = 0
Query: 10 LSAGLPLLVFLTGGSLFLAKFVQGRVEAKDSKLQSRSEREFSIEEEHKRMMAKLDPENAYKVVRIHRPEDD 80
+ GLP ++F+ GG L FV GR E +D ++S+SER F+++EEH+++M KL ++ +++ RI P +D
Sbjct: 19 VRVGLPFVIFVVGGFTGLQSFVGGRFERRDMLVKSQSERAFNLDEEHRKIMQKLKVDD-FEIKRIPNPGED 88
BLAST of EWM29133.1 vs. NCBI_GenBank
Match: gi|698810930|ref|XP_009838494.1| (hypothetical protein H257_12848 [Aphanomyces astaci] >gi|574106534|gb|ETV72051.1| hypothetical protein H257_12848 [Aphanomyces astaci]) HSP 1 Score: 59.3066 bits (142), Expect = 7.898e-10 Identity = 26/71 (36.62%), Postives = 49/71 (69.01%), Query Frame = 0
Query: 10 LSAGLPLLVFLTGGSLFLAKFVQGRVEAKDSKLQSRSEREFSIEEEHKRMMAKLDPENAYKVVRIHRPEDD 80
++ G+P ++F+ GG L +F+ G++E KD ++S+SER F+++EEH+++M KL+ + + RI P +D
Sbjct: 16 VNVGMPFVLFVVGGFTVLNQFLDGKMEKKDVMVKSQSERAFNLDEEHRKIMQKLNTTDLV-IKRIPAPGED 85
BLAST of EWM29133.1 vs. NCBI_GenBank
Match: gi|669165368|ref|XP_008618246.1| (hypothetical protein SDRG_13923 [Saprolegnia diclina VS20] >gi|813127311|ref|XP_012197305.1| hypothetical protein SPRG_03338 [Saprolegnia parasitica CBS 223.65] >gi|530730134|gb|EQC28376.1| hypothetical protein SDRG_13923 [Saprolegnia diclina VS20] >gi|641538286|gb|KDO32120.1| hypothetical protein SPRG_03338 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 58.9214 bits (141), Expect = 9.370e-10 Identity = 27/69 (39.13%), Postives = 47/69 (68.12%), Query Frame = 0
Query: 12 AGLPLLVFLTGGSLFLAKFVQGRVEAKDSKLQSRSEREFSIEEEHKRMMAKLDPENAYKVVRIHRPEDD 80
GLP ++F+ GG L FV G+ E +D ++S+SER F+++EEH+++M KL ++ +++ RI P +D
Sbjct: 13 VGLPFVIFVVGGFAGLQNFVGGKFERRDMMVKSQSERAFNLDEEHRKIMHKLKTDD-FEIKRIPNPGED 80
BLAST of EWM29133.1 vs. NCBI_GenBank
Match: gi|1214711969|gb|OWZ22941.1| (hypothetical protein PHMEG_0002270 [Phytophthora megakarya]) HSP 1 Score: 62.003 bits (149), Expect = 1.779e-9 Identity = 28/53 (52.83%), Postives = 41/53 (77.36%), Query Frame = 0
Query: 11 SAGLPLLVFLTGGSLFLAKFVQGRVEAKDSKLQSRSEREFSIEEEHKRMMAKL 63
+AGLPL++F+ GG + L +FV G+ EA+D ++S+SE F++EEEHKRM KL
Sbjct: 1383 TAGLPLVLFIVGGYVALTQFVGGKFEARDHMVKSQSEHMFNLEEEHKRMSKKL 1435
BLAST of EWM29133.1 vs. NCBI_GenBank
Match: gi|970616108|gb|KUF64319.1| (hypothetical protein AM587_10008661 [Phytophthora nicotianae]) HSP 1 Score: 61.6178 bits (148), Expect = 2.822e-9 Identity = 28/53 (52.83%), Postives = 41/53 (77.36%), Query Frame = 0
Query: 11 SAGLPLLVFLTGGSLFLAKFVQGRVEAKDSKLQSRSEREFSIEEEHKRMMAKL 63
+AGLPL++F+ GG + L +FV G+ EA+D ++S+SE F++EEEHKRM KL
Sbjct: 1598 TAGLPLVLFIVGGYVALTQFVGGKYEARDHLVKSQSEHLFNLEEEHKRMTKKL 1650 The following BLAST results are available for this feature:
BLAST of EWM29133.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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