rna1545, rna1545 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1545
Unique Name	rna1545
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	561
Alignment location	CM002457.1:902089..903678 -

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Properties


Property Name	Value
Product	nuclear lim factor interactor-interacting protein cleavage-specific form
Orig transcript id	gnl\|cribi\|Naga_100007g26.6512.mrna
Orig protein id	gnl\|cribi\|Naga_100007g26.6512
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002457.1	supercontig	CM002457.1:902089..903678 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100007g26	gene1489	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1545	rna1545-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29185.1	cds1541	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002457.1:902089..903678-
coding sequence from alignment at CM002457.1:902089..903678-

mRNA sequence

>rna1545 ID=rna1545|Name=rna1545|organism=Nannochloropsis gaditana|type=mRNA|length=561bp
ATGGAGGCGAAGCTATATGACGGGACTGTCGTGGCATTGCAATCCGCGGG
AGCTCGCGTGCTGCGGCCGCCAGCAGTCGAGACTCATGACGGAAATCTCT
CCTACACCATTCGAGCGCGTCACGGGATAGATTTGTATGAAATTCATTTG
TCATCTCAGCGAAATTTCGTCCTCGTGCGCGCAACTCAGTGTCCATCTGC
ATTTGATAAAGGAGGGTCGGCGGCCAATGAGCGACTATGTACAGCTTTAG
ACTTGACAGTCCCTCTTATTGGCCAGGTGTATACGCTCATGTTGGACATA
AATCGGTATGTGGTACATTTAGCAGACGGTTCCACAGCCTTGGTCAACGA
GACATTACTTCTAGCGAATCTGAACGAGAACATTTTTGGCAAATTTGGCT
TAGAAGCGTTGACAACAGACCTTAAGCTGCTAGAATCACATGCCCTCGGA
AGACGAGGACTTTGGGGCACCGGATTGAGTTTGCCGACGACCATACTGTA
TGGAGGGGTCGCCATCACTGTGCTCGCTATAGTATATTTACGTTTTCGAC
GGAAGAAATGA

protein sequence of rna1545

>rna1545-protein ID=rna1545-protein|Name=rna1545|organism=Nannochloropsis gaditana|type=polypeptide|length=459bp
MTEQRRASFRGLTIDTNTPQHVNPQLSPAVTPTGSQGTPRSWFGTSSGLT
DPRSWLQSPRKWANNRTPTNQGGNSTPNTRKLVAYFNTLHKPKVEEFLNE
CDDEGNGRPSCSTSKKDSATATATASPIPSTLANIMHQTDKDGKSQHVAA
QLPSSCQESEHQEVEPAPETSFFSRVVGRMARLNFSDGHDLEVRASTAPS
STLMKNGGHRRQVSPKPVKMSGPKGQSQSPDLLGEVHAADRGKKCLVLDL
DETLIHSSFQPVEDADFVIPIVIEGSQYQVYVLKRPGVDGFLERVGRDYE
VVIFTASLSLYADPLLDELDVHKVIRHRLYRESCTFFQGSYVKDMRRLGR
DISQVILVDNSPLSYMFQPENAIGCSSYIDATSDVELGVIAAFLEDVKEC
EDVREHCRNWRKWGDLGIIFNTPLCNIVSCRSQGQKRGHTNMCNLCCHEN
QSHKTYFLQ

mRNA from alignment at CM002457.1:902089..903678-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1545 ID=rna1545|Name=rna1545|organism=Nannochloropsis gaditana|type=mRNA|length=1590bp|location=Sequence derived from alignment at CM002457.1:902089..903678- (Nannochloropsis gaditana)
ATGACAGAGCAAAGGAGGGCCAGTTTTAGAGGTAAGAATTTGCTGGGTTG
TCCTAGCATAGGCCGCATCCATAATTTACAATTCACTCATTCACACCCAC
GAACCGCTGCGGCGACAGGTCTGACTATAGATACAAATACACCACAACAT
GTCAATCCTCAATTAAGCCCCGCCGTAACTCCAACGGGGTCTCAAGGCAC
TCCTCGGAGTTGGTTTGGCACCTCTTCCGGACTGACGGATCCTCGCTCTT
GGCTGCAGTCCCCACGCAAATGGGCCAACAATCGAACTCCCACCAACCAA
GGTGGTAACTCGACTCCTAACACAAGGAAACTGGTTGCCTATTTTAATAC
CCTACATAAGCCGAAGGTTGAAGAGTTCTTGAACGAGTGTGATGACGAGG
GGAATGGAAGACCCTCATGTAGTACCAGCAAAAAGGATTCAGCGACCGCC
ACGGCAACAGCGTCCCCGATTCCCTCTACTCTGGCAAATATTATGCACCA
AACTGATAAGGACGGCAAATCCCAACACGTTGCCGCTCAACTGCCCTCTT
CTTGTCAGGAAAGCGAGCATCAAGAGGTGGAGCCTGCGCCGGAGACGTCC
TTCTTCAGCCGCGTGGTGGGGCGCATGGCCCGTCTGAATTTTTCAGATGG
TCACGACTTAGAAGTACGTGCATCGACTGCACCTTCCTCAACTTTGATGA
AGAACGGCGGGCATCGTCGTCAAGTTTCGCCAAAGCCAGTCAAGATGTCC
GGTCCCAAAGGTCAAAGCCAGAGTCCCGATTTACTTGGAGAAGTACACGC
GGCAGACAGGGGGAAAAAATGCCTCGTACTAGACTTAGATGAGACTTTGA
TTCACTCGTCTTTTCAGCCTGTTGAAGACGCTGACTTTGTCATACCCATT
GTCATCGAAGGGAGTCAGTATCAGGTATACGTCCTAAAGCGGCCAGGCGT
AGATGGCTTCCTGGAGCGCGTAGGCAGGGACTACGAGGTCGTCATCTTCA
CTGCATCTCTAAGCCTCTACGCAGATCCTCTCCTAGATGAACTGGACGTC
CATAAGGTCATACGTCACCGCCTATACCGTGAAAGTTGCACCTTTTTCCA
AGGCAGCTACGTGAAGGATATGAGGCGTTTGGGTCGGGACATTAGTCAGG
TCATTCTGGTTGACAACTCGCCGCTTTCCTACATGTTTCAGCCAGAAAAT
GCAATTGGATGTTCTTCATACATTGATGCAACCTCCGATGTGGAGCTCGG
TGTGATTGCGGCTTTCTTGGAGGACGTAAAGGAGTGCGAGGATGTTCGGG
AGCACTGCCGCAACTGGCGAAAATGGGGTGAGTATCAGAACAAGGCTCAC
ACGCGCTTGCAGCTTCAAGGGGTTCACGCTGGTTGATCCTGGGGCTAGCG
ATAGGCAGGGGAGGAAGACCTCAGAAGAAAGCATGCTTGATAAATTTGGT
GCAGTTTGGGAATCATTTTTAATACTCCGCTATGCAACATCGTTTCATGC
AGAAGCCAAGGACAGAAGCGGGGCCACACTAACATGTGCAATTTGTGCTG
CCATGAAAATCAAAGTCATAAAACATACTTTTTGCAGTGA

Coding sequence (CDS) from alignment at CM002457.1:902089..903678-

>rna1545 ID=rna1545|Name=rna1545|organism=Nannochloropsis gaditana|type=CDS|length=4140bp|location=Sequence derived from alignment at CM002457.1:902089..903678- (Nannochloropsis gaditana)
TTTGGGAATCATTTTTAATACTCCGCTATGCAACATCGTTTCATGCAGAA
GCCAAGGACAGAAGCGGGGCCACACTAACATGTGCAATTTGTGCTGCCAT
GAAAATCAAAGTCATAAAACATACTTTTTGCAGTGAGTCTGACTATAGAT
ACAAATACACCACAACATGTCAATCCTCAATTAAGCCCCGCCGTAACTCC
AACGGGGTCTCAAGGCACTCCTCGGAGTTGGTTTGGCACCTCTTCCGGAC
TGACGGATCCTCGCTCTTGGCTGCAGTCCCCACGCAAATGGGCCAACAAT
CGAACTCCCACCAACCAAGGTGGTAACTCGACTCCTAACACAAGGAAACT
GGTTGCCTATTTTAATACCCTACATAAGCCGAAGGTTGAAGAGTTCTTGA
ACGAGTGTGATGACGAGGGGAATGGAAGACCCTCATGTAGTACCAGCAAA
AAGGATTCAGCGACCGCCACGGCAACAGCGTCCCCGATTCCCTCTACTCT
GGCAAATATTATGCACCAAACTGATAAGGACGGCAAATCCCAACACGTTG
CCGCTCAACTGCCCTCTTCTTGTCAGGAAAGCGAGCATCAAGAGGTGGAG
CCTGCGCCGGAGACGTCCTTCTTCAGCCGCGTGGTGGGGCGCATGGCCCG
TCTGAATTTTTCAGATGGTCACGACTTAGAAGTACGTGCATCGACTGCAC
CTTCCTCAACTTTGATGAAGAACGGCGGGCATCGTCGTCAAGTTTCGCCA
AAGCCAGTCAAGATGTCCGGTCCCAAAGGTCAAAGCCAGAGTCCCGATTT
ACTTGGAGAAGTACACGCGGCAGACAGGGGGAAAAAATGCCTCGTACTAG
ACTTAGATGAGACTTTGATTCACTCGTCTTTTCAGCCTGTTGAAGACGCT
GACTTTGTCATACCCATTGTCATCGAAGGGAGTCAGTATCAGGTATACGT
CCTAAAGCGGCCAGGCGTAGATGGCTTCCTGGAGCGCGTAGGCAGGGACT
ACGAGGTCGTCATCTTCACTGCATCTCTAAGCCTCTACGCAGATCCTCTC
CTAGATGAACTGGACGTCCATAAGGTCATACGTCACCGCCTATACCGTGA
AAGTTGCACCTTTTTCCAAGGCAGCTACGTGAAGGATATGAGGCGTTTGG
GTCGGGACATTAGTCAGGTCATTCTGGTTGACAACTCGCCGCTTTCCTAC
ATGTTTCAGCCAGAAAATGCAATTGGATGTTCTTCATACATTGATGCAAC
CTCCGATGTGGAGCTCGGTGTGATTGCGGCTTTCTTGGAGGACGTAAAGG
AGTGCGAGGATGTTCGGGAGCACTGCCGCAACTGGCGAAAATGGGGTGAA
TGACAGAGCAAAGGAGGGCCAGTTTTAGAGTTTGGGAATCATTTTTAATA
CTCCGCTATGCAACATCGTTTCATGCAGAAGCCAAGGACAGAAGCGGGGC
CACACTAACATGTGCAATTTGTGCTGCCATGAAAATCAAAGTCATAAAAC
ATACTTTTTGCAGTGAGTCTGACTATAGATACAAATACACCACAACATGT
CAATCCTCAATTAAGCCCCGCCGTAACTCCAACGGGGTCTCAAGGCACTC
CTCGGAGTTGGTTTGGCACCTCTTCCGGACTGACGGATCCTCGCTCTTGG
CTGCAGTCCCCACGCAAATGGGCCAACAATCGAACTCCCACCAACCAAGG
TGGTAACTCGACTCCTAACACAAGGAAACTGGTTGCCTATTTTAATACCC
TACATAAGCCGAAGGTTGAAGAGTTCTTGAACGAGTGTGATGACGAGGGG
AATGGAAGACCCTCATGTAGTACCAGCAAAAAGGATTCAGCGACCGCCAC
GGCAACAGCGTCCCCGATTCCCTCTACTCTGGCAAATATTATGCACCAAA
CTGATAAGGACGGCAAATCCCAACACGTTGCCGCTCAACTGCCCTCTTCT
TGTCAGGAAAGCGAGCATCAAGAGGTGGAGCCTGCGCCGGAGACGTCCTT
CTTCAGCCGCGTGGTGGGGCGCATGGCCCGTCTGAATTTTTCAGATGGTC
ACGACTTAGAAGTACGTGCATCGACTGCACCTTCCTCAACTTTGATGAAG
AACGGCGGGCATCGTCGTCAAGTTTCGCCAAAGCCAGTCAAGATGTCCGG
TCCCAAAGGTCAAAGCCAGAGTCCCGATTTACTTGGAGAAGTACACGCGG
CAGACAGGGGGAAAAAATGCCTCGTACTAGACTTAGATGAGACTTTGATT
CACTCGTCTTTTCAGCCTGTTGAAGACGCTGACTTTGTCATACCCATTGT
CATCGAAGGGAGTCAGTATCAGGTATACGTCCTAAAGCGGCCAGGCGTAG
ATGGCTTCCTGGAGCGCGTAGGCAGGGACTACGAGGTCGTCATCTTCACT
GCATCTCTAAGCCTCTACGCAGATCCTCTCCTAGATGAACTGGACGTCCA
TAAGGTCATACGTCACCGCCTATACCGTGAAAGTTGCACCTTTTTCCAAG
GCAGCTACGTGAAGGATATGAGGCGTTTGGGTCGGGACATTAGTCAGGTC
ATTCTGGTTGACAACTCGCCGCTTTCCTACATGTTTCAGCCAGAAAATGC
AATTGGATGTTCTTCATACATTGATGCAACCTCCGATGTGGAGCTCGGTG
TGATTGCGGCTTTCTTGGAGGACGTAAAGGAGTGCGAGGATGTTCGGGAG
CACTGCCGCAACTGGCGAAAATGGGGTGAATGACAGAGCAAAGGAGGGCC
AGTTTTAGAGTTTGGGAATCATTTTTAATACTCCGCTATGCAACATCGTT
TCATGCAGAAGCCAAGGACAGAAGCGGGGCCACACTAACATGTGCAATTT
GTGCTGCCATGAAAATCAAAGTCATAAAACATACTTTTTGCAGTGAGTCT
GACTATAGATACAAATACACCACAACATGTCAATCCTCAATTAAGCCCCG
CCGTAACTCCAACGGGGTCTCAAGGCACTCCTCGGAGTTGGTTTGGCACC
TCTTCCGGACTGACGGATCCTCGCTCTTGGCTGCAGTCCCCACGCAAATG
GGCCAACAATCGAACTCCCACCAACCAAGGTGGTAACTCGACTCCTAACA
CAAGGAAACTGGTTGCCTATTTTAATACCCTACATAAGCCGAAGGTTGAA
GAGTTCTTGAACGAGTGTGATGACGAGGGGAATGGAAGACCCTCATGTAG
TACCAGCAAAAAGGATTCAGCGACCGCCACGGCAACAGCGTCCCCGATTC
CCTCTACTCTGGCAAATATTATGCACCAAACTGATAAGGACGGCAAATCC
CAACACGTTGCCGCTCAACTGCCCTCTTCTTGTCAGGAAAGCGAGCATCA
AGAGGTGGAGCCTGCGCCGGAGACGTCCTTCTTCAGCCGCGTGGTGGGGC
GCATGGCCCGTCTGAATTTTTCAGATGGTCACGACTTAGAAGTACGTGCA
TCGACTGCACCTTCCTCAACTTTGATGAAGAACGGCGGGCATCGTCGTCA
AGTTTCGCCAAAGCCAGTCAAGATGTCCGGTCCCAAAGGTCAAAGCCAGA
GTCCCGATTTACTTGGAGAAGTACACGCGGCAGACAGGGGGAAAAAATGC
CTCGTACTAGACTTAGATGAGACTTTGATTCACTCGTCTTTTCAGCCTGT
TGAAGACGCTGACTTTGTCATACCCATTGTCATCGAAGGGAGTCAGTATC
AGGTATACGTCCTAAAGCGGCCAGGCGTAGATGGCTTCCTGGAGCGCGTA
GGCAGGGACTACGAGGTCGTCATCTTCACTGCATCTCTAAGCCTCTACGC
AGATCCTCTCCTAGATGAACTGGACGTCCATAAGGTCATACGTCACCGCC
TATACCGTGAAAGTTGCACCTTTTTCCAAGGCAGCTACGTGAAGGATATG
AGGCGTTTGGGTCGGGACATTAGTCAGGTCATTCTGGTTGACAACTCGCC
GCTTTCCTACATGTTTCAGCCAGAAAATGCAATTGGATGTTCTTCATACA
TTGATGCAACCTCCGATGTGGAGCTCGGTGTGATTGCGGCTTTCTTGGAG
GACGTAAAGGAGTGCGAGGATGTTCGGGAGCACTGCCGCAACTGGCGAAA
ATGGGGTGAATGACAGAGCAAAGGAGGGCCAGTTTTAGAG

Synonyms

Publications