EWM29185.1, cds1541 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29185.1 vs. NCBI_GenBank
Match: gi|585111705|gb|EWM29185.1| (nuclear lim factor interactor-interacting protein cleavage-specific form [Nannochloropsis gaditana]) HSP 1 Score: 962.985 bits (2488), Expect = 0.000e+0 Identity = 459/459 (100.00%), Postives = 459/459 (100.00%), Query Frame = 0
Query: 1 MTEQRRASFRGLTIDTNTPQHVNPQLSPAVTPTGSQGTPRSWFGTSSGLTDPRSWLQSPRKWANNRTPTNQGGNSTPNTRKLVAYFNTLHKPKVEEFLNECDDEGNGRPSCSTSKKDSATATATASPIPSTLANIMHQTDKDGKSQHVAAQLPSSCQESEHQEVEPAPETSFFSRVVGRMARLNFSDGHDLEVRASTAPSSTLMKNGGHRRQVSPKPVKMSGPKGQSQSPDLLGEVHAADRGKKCLVLDLDETLIHSSFQPVEDADFVIPIVIEGSQYQVYVLKRPGVDGFLERVGRDYEVVIFTASLSLYADPLLDELDVHKVIRHRLYRESCTFFQGSYVKDMRRLGRDISQVILVDNSPLSYMFQPENAIGCSSYIDATSDVELGVIAAFLEDVKECEDVREHCRNWRKWGDLGIIFNTPLCNIVSCRSQGQKRGHTNMCNLCCHENQSHKTYFLQ 459
MTEQRRASFRGLTIDTNTPQHVNPQLSPAVTPTGSQGTPRSWFGTSSGLTDPRSWLQSPRKWANNRTPTNQGGNSTPNTRKLVAYFNTLHKPKVEEFLNECDDEGNGRPSCSTSKKDSATATATASPIPSTLANIMHQTDKDGKSQHVAAQLPSSCQESEHQEVEPAPETSFFSRVVGRMARLNFSDGHDLEVRASTAPSSTLMKNGGHRRQVSPKPVKMSGPKGQSQSPDLLGEVHAADRGKKCLVLDLDETLIHSSFQPVEDADFVIPIVIEGSQYQVYVLKRPGVDGFLERVGRDYEVVIFTASLSLYADPLLDELDVHKVIRHRLYRESCTFFQGSYVKDMRRLGRDISQVILVDNSPLSYMFQPENAIGCSSYIDATSDVELGVIAAFLEDVKECEDVREHCRNWRKWGDLGIIFNTPLCNIVSCRSQGQKRGHTNMCNLCCHENQSHKTYFLQ
Sbjct: 1 MTEQRRASFRGLTIDTNTPQHVNPQLSPAVTPTGSQGTPRSWFGTSSGLTDPRSWLQSPRKWANNRTPTNQGGNSTPNTRKLVAYFNTLHKPKVEEFLNECDDEGNGRPSCSTSKKDSATATATASPIPSTLANIMHQTDKDGKSQHVAAQLPSSCQESEHQEVEPAPETSFFSRVVGRMARLNFSDGHDLEVRASTAPSSTLMKNGGHRRQVSPKPVKMSGPKGQSQSPDLLGEVHAADRGKKCLVLDLDETLIHSSFQPVEDADFVIPIVIEGSQYQVYVLKRPGVDGFLERVGRDYEVVIFTASLSLYADPLLDELDVHKVIRHRLYRESCTFFQGSYVKDMRRLGRDISQVILVDNSPLSYMFQPENAIGCSSYIDATSDVELGVIAAFLEDVKECEDVREHCRNWRKWGDLGIIFNTPLCNIVSCRSQGQKRGHTNMCNLCCHENQSHKTYFLQ 459
BLAST of EWM29185.1 vs. NCBI_GenBank
Match: gi|1173957844|gb|OQS04298.1| (NLI interacting factor-like phosphatase [Thraustotheca clavata]) HSP 1 Score: 243.047 bits (619), Expect = 2.257e-73 Identity = 127/284 (44.72%), Postives = 178/284 (62.68%), Query Frame = 0
Query: 127 PIPSTLANIMHQTDKDGKSQHVAAQLPSSCQESEHQEVEPAPETSFFSRVVGRMARLNFSDGHDLEVRASTAPSSTLMKNGGHRRQVSPKPVKMSGPKGQSQSPDLLGEVHAADRGKKCLVLDLDETLIHSSFQPVEDADFVIPIVIEGSQYQVYVLKRPGVDGFLERVGRDYEVVIFTASLSLYADPLLDELDVHKVIRHRLYRESCTFFQGSYVKDMRRLGRDISQVILVDNSPLSYMFQPENAIGCSSYIDATSDVELGVIAAFLEDVKECEDVREHCRNW 410
P P LA+++HQTD+ GK H+ ++ +V PA + G +++L F++ A P M R+ + K + + ++ + D GKKCLVLDLDETL+HSSF+P+ + D+VIP+ IEG +QVYVLKRPGVD F+ ++ YE+V++TASLS YADPLLD+LD+HKVIR RL+RE C ++GSYVKD+ + RDI+Q I++DNSP+SY+F P NAIGCSS+ID D EL I+ FL +++ EDVR H W
Sbjct: 55 PAPCPLASLVHQTDRHGK--HIVSE----------SKVRPATTSG-----NGGISKL-FANI----CSALGLPEQQQMLQQQMLRKQQLQQNKQHETRQSIEVRKIMSQPFPGDEGKKCLVLDLDETLVHSSFKPIHNPDYVIPVEIEGHVHQVYVLKRPGVDEFMRKLAEHYEIVVYTASLSKYADPLLDQLDIHKVIRFRLFREHCVHYEGSYVKDLSLIDRDITQSIIIDNSPMSYLFHPRNAIGCSSFIDDLDDRELDSISDFLTEIRHVEDVRSHLHLW 316
BLAST of EWM29185.1 vs. NCBI_GenBank
Match: gi|813150089|ref|XP_012200691.1| (hypothetical protein SPRG_06484 [Saprolegnia parasitica CBS 223.65] >gi|641534690|gb|KDO28629.1| hypothetical protein SPRG_06484 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 243.047 bits (619), Expect = 2.653e-73 Identity = 125/290 (43.10%), Postives = 180/290 (62.07%), Query Frame = 0
Query: 125 ASPIPSTLANIMHQTDKDGK--SQHVAAQL-PSSCQESEHQEVEPAPETSFFSRVVGRMARLNFSDGHDLEVRASTAPSSTLMKNGGHRRQVSPKPVKMSGPKGQS-QSPDLLGEVHAADRGKKCLVLDLDETLIHSSFQPVEDADFVIPIVIEGSQYQVYVLKRPGVDGFLERVGRDYEVVIFTASLSLYADPLLDELDVHKVIRHRLYRESCTFFQGSYVKDMRRLGRDISQVILVDNSPLSYMFQPENAIGCSSYIDATSDVELGVIAAFLEDVKECEDVREHCRNW 410
A+ PS LA+++HQTD+ GK S HV ++ P++ + + + F+ + + + ++K H+ V+ S QS + ++ D GKKCLVLDLDETL+HSSF+P+ + D++IP+ IEG +QVYVLKRPGVD F+ + YE+V++TASLS YADPLLD+LD+HKVIR RL+RE C ++GSYVKD+ + RDI+Q +++DNSP+SY+F P NAIGCSS+ID D EL I+AFL +++ +DVR H W
Sbjct: 61 AAEPPSPLASLVHQTDRHGKHTSHHVDTKVRPTTTSAGQSGGI-----SKLFANICSALGL----------PEQQQQLQAQMLKKQQHQ-------VEKSHETRQSIEVRKIMSTPFPGDEGKKCLVLDLDETLVHSSFKPIHNPDYIIPVEIEGHVHQVYVLKRPGVDEFMRELAEHYEIVVYTASLSKYADPLLDQLDIHKVIRFRLFREHCVHYEGSYVKDLSLIDRDITQSVIIDNSPMSYLFHPRNAIGCSSFIDDLDDRELDSISAFLTEIRSVDDVRNHLHRW 328
BLAST of EWM29185.1 vs. NCBI_GenBank
Match: gi|1173935875|gb|OQR86927.1| (NLI interacting factor-like phosphatase [Achlya hypogyna]) HSP 1 Score: 242.276 bits (617), Expect = 5.161e-73 Identity = 105/172 (61.05%), Postives = 135/172 (78.49%), Query Frame = 0
Query: 239 ADRGKKCLVLDLDETLIHSSFQPVEDADFVIPIVIEGSQYQVYVLKRPGVDGFLERVGRDYEVVIFTASLSLYADPLLDELDVHKVIRHRLYRESCTFFQGSYVKDMRRLGRDISQVILVDNSPLSYMFQPENAIGCSSYIDATSDVELGVIAAFLEDVKECEDVREHCRNW 410
D GKKCLVLDLDETL+HSSF+P+ + D++IP+ IEG +QVYVLKRPGVD F+ + YE+V++TASLS YADPLLD+LD+HKVIR RL+RE C ++GSYVKD+ + RDI+Q I++DNSP+SY+F P NAIGCSS+ID D EL I+AFL D++ +DVR H W
Sbjct: 157 GDEGKKCLVLDLDETLVHSSFKPIHNPDYIIPVEIEGHVHQVYVLKRPGVDEFMRALAEHYEIVVYTASLSKYADPLLDQLDIHKVIRFRLFREHCVHYEGSYVKDLSLIDRDITQSIIIDNSPMSYLFHPRNAIGCSSFIDDLDDRELDSISAFLTDIRHVDDVRNHLHKW 328
BLAST of EWM29185.1 vs. NCBI_GenBank
Match: gi|673028424|ref|XP_008868173.1| (hypothetical protein H310_05278 [Aphanomyces invadans] >gi|574475790|gb|ETW02789.1| hypothetical protein H310_05278 [Aphanomyces invadans]) HSP 1 Score: 242.662 bits (618), Expect = 9.059e-73 Identity = 127/299 (42.47%), Postives = 172/299 (57.53%), Query Frame = 0
Query: 129 PSTLANIMHQTDKDGKSQHVAAQLPSSCQESEHQEVEPAPETS----------------FFSRVVGRMARLNFSDGHDLEVRASTAPSSTLMKNGGHRRQVSPKPVKMSGPKGQSQSP-DLLGEVHAADRGKKCLVLDLDETLIHSSFQPVEDADFVIPIVIEGSQYQVYVLKRPGVDGFLERVGRDYEVVIFTASLSLYADPLLDELDVHKVIRHRLYRESCTFFQGSYVKDMRRLGRDISQVILVDNSPLSYMFQPENAIGCSSYIDATSDVELGVIAAFLEDVKECEDVREHCRNW 410
PS LA+++HQTD+ GK P Q + H ++ P TS F+ + + + + H + V + QSQ ++G D GKKCLVLDLDETL+HSSF+P+ + D+VIP+ IEG +QVYV KRPGVD F+ ++ YE+V++TASLS YADPLLD+LD HKVIR RL+RE C ++GSYVKD+ + RDI+Q I++DNSP+SY+F P NAIGCSS+ID D EL I FL +++ +DVR HC W
Sbjct: 74 PSPLASLVHQTDRHGKHS------PHPQQHTSHDALKVKPTTSSSIDARNSQQPGGISKLFANICSCLGLAEQQQLAQQHQQQQQQQFQYRKQLSNHEKIVETR---------QSQEVRKIMGTKFPGDEGKKCLVLDLDETLVHSSFKPILNPDYVIPVEIEGHVHQVYVAKRPGVDEFMRKMAEFYEIVVYTASLSKYADPLLDQLDTHKVIRFRLFREHCVHYEGSYVKDLSLIDRDITQSIIIDNSPMSYLFHPRNAIGCSSFIDDMDDRELDSITNFLTEIRAVDDVRNHCHKW 357
BLAST of EWM29185.1 vs. NCBI_GenBank
Match: gi|669170981|ref|XP_008620839.1| (protein phosphatase [Saprolegnia diclina VS20] >gi|530727505|gb|EQC25747.1| protein phosphatase [Saprolegnia diclina VS20]) HSP 1 Score: 240.35 bits (612), Expect = 3.205e-72 Identity = 125/291 (42.96%), Postives = 179/291 (61.51%), Query Frame = 0
Query: 125 ASPIPSTLANIMHQTDKDGK---SQHVAAQL-PSSCQESEHQEVEPAPETSFFSRVVGRMARLNFSDGHDLEVRASTAPSSTLMKNGGHRRQVSPKPVKMSGPKGQS-QSPDLLGEVHAADRGKKCLVLDLDETLIHSSFQPVEDADFVIPIVIEGSQYQVYVLKRPGVDGFLERVGRDYEVVIFTASLSLYADPLLDELDVHKVIRHRLYRESCTFFQGSYVKDMRRLGRDISQVILVDNSPLSYMFQPENAIGCSSYIDATSDVELGVIAAFLEDVKECEDVREHCRNW 410
A+ PS LA+++HQTD+ GK S HV ++ P++ +S + F+ + + + ++K H+ V+ S QS + ++ D GKKCLVLDLDETL+HSSF+P+ + D++IP+ IEG +QVYVLKRPGVD F+ + YE+V++TASLS YADPLLD+LD+H VIR RL+RE C ++GSYVKD+ + RDI+Q +++DNSP+SY+F P NAIGCSS+ID D EL I+AFL +++ +DVR H W
Sbjct: 61 AAEPPSPLASLVHQTDRHGKHTSSHHVDTKVRPTAAGQS-------GGISKLFANICSALGL----------PEQQQQLQAQMLKKQAHQ-------VEKSHETRQSIEVRKIMSTPFPGDEGKKCLVLDLDETLVHSSFKPIHNPDYIIPVEIEGHVHQVYVLKRPGVDEFMRVLAEHYEIVVYTASLSKYADPLLDQLDIHNVIRFRLFREHCVHYEGSYVKDLSLIDRDITQSVIIDNSPMSYLFHPRNAIGCSSFIDDLDDRELDSISAFLTEIRSVDDVRNHLHRW 327
BLAST of EWM29185.1 vs. NCBI_GenBank
Match: gi|1214700326|gb|OWZ12936.1| (Nuclear LIM factor interactor-interacting protein spore-specific form [Phytophthora megakarya]) HSP 1 Score: 239.195 bits (609), Expect = 3.331e-72 Identity = 130/306 (42.48%), Postives = 177/306 (57.84%), Query Frame = 0
Query: 108 RPSCSTSKKDSATATATASPIPSTLANIMHQTDKDGKSQHVAAQL---PSSCQESEHQEVEPAPETSFFSRVVGRMARLNFSDGHDLEVRASTAPSSTLMKNGGHRRQVSPKPVKMSGPKGQSQSPDLLGEVHAADRGKKCLVLDLDETLIHSSFQPVEDADFVIPIVIEGSQYQVYVLKRPGVDGFLERVGRDYEVVIFTASLSLYADPLLDELDVHKVIRHRLYRESCTFFQGSYVKDMRRLGRDISQVILVDNSPLSYMFQPENAIGCSSYIDATSDVELGVIAAFLEDVKECEDVREHCRNW 410
+P + T I + LA+++HQTD++GK Q + L +S + +H+ F + G + ST S + RR KP + P+LL V D KKCLVLDLDETL+HSSF+P ++ADF+IPI I+G+ + VYV KRPG + FL + + YE+V++TASLS YADPLLD+LD VIR+RLYRE C ++G+YVKD+ L RD+SQ I+VDNSP +Y F P+NAIGCSS+ID +D EL I+ FL + EDVREH + W
Sbjct: 9 KPEVVVTSNSVPTKQLAGLNIANPLASVVHQTDENGKQQPILTGLRRESTSTSKGQHR--------GSFRNIFGNIWS-----------ALSTHDQSQDLDKTNRRRSSLSKPKTATVSNAIQLRPNLLPPVSPNDANKKCLVLDLDETLVHSSFRPTDNADFIIPIDIDGTTHHVYVAKRPGAEEFLIEMAKYYEIVVYTASLSKYADPLLDKLDPEDVIRYRLYREHCVQYEGNYVKDLSLLDRDLSQTIIVDNSPAAYTFHPQNAIGCSSFIDDPNDRELASISRFLTKHYDVEDVREHLQIW 295
BLAST of EWM29185.1 vs. NCBI_GenBank
Match: gi|698791484|ref|XP_009828774.1| (hypothetical protein H257_05562 [Aphanomyces astaci] >gi|574116553|gb|ETV82037.1| hypothetical protein H257_05562 [Aphanomyces astaci]) HSP 1 Score: 241.891 bits (616), Expect = 6.130e-72 Identity = 123/287 (42.86%), Postives = 175/287 (60.98%), Query Frame = 0
Query: 129 PSTLANIMHQTDKDGKS-----QHVAAQLPSSCQESEHQEVEPAPETSFFSRVVGRMARLNFSDGHDLEVRASTAPSSTLMKNGGHRRQVSPKPVKMSGPKGQSQSPDLLGEVHAADRGKKCLVLDLDETLIHSSFQPVEDADFVIPIVIEGSQYQVYVLKRPGVDGFLERVGRDYEVVIFTASLSLYADPLLDELDVHKVIRHRLYRESCTFFQGSYVKDMRRLGRDISQVILVDNSPLSYMFQPENAIGCSSYIDATSDVELGVIAAFLEDVKECEDVREHCRNW 410
PS LA+++HQTD+ GK Q P++ +P + F+ + + E + ++ +R+Q S ++ +GQ + ++ D GKKCLVLDLDETL+HSSF+P+ + D+VIP+ IEG +QVYV KRPGVD F+ ++ YE+V++TASLS YADPLLD+LD HKVIR RL+RE C ++GSYVKD+ + RDI+Q I++DNSP+SY+F P NAIGCSS+ID D EL I FL +++ +DVR +C W
Sbjct: 114 PSPLASLVHQTDRHGKHSPHPHQDALKVKPTTSSIDTRNPQQPGGISKLFANICSCLGLA--------EQQQQQLAQQQQQQHMQYRKQPSQHEKQVETRQGQ-EVRRIMSTPFPGDEGKKCLVLDLDETLVHSSFKPIPNPDYVIPVEIEGHVHQVYVAKRPGVDEFMRKMAEFYEIVVYTASLSKYADPLLDQLDTHKVIRFRLFREHCVHYEGSYVKDLSLIDRDINQSIIIDNSPMSYLFHPRNAIGCSSFIDDMDDRELDSITTFLTEIRGVDDVRNYCHKW 391
BLAST of EWM29185.1 vs. NCBI_GenBank
Match: gi|1210531035|dbj|GAX10136.1| (carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase [Fistulifera solaris]) HSP 1 Score: 242.662 bits (618), Expect = 7.331e-72 Identity = 155/372 (41.67%), Postives = 206/372 (55.38%), Query Frame = 0
Query: 55 WLQSPRKWANNRTPT----NQGGNSTPNTRK--LVAYFNTLHKPKVEEFLNECDDEGNGR-PSCSTSKKDSATATATASPIPSTLANIMHQTDKDGKSQHVAAQLPSSCQESEHQEVEPAPETSFFSRVVGRMARLNFSDGHDLE-VRASTAPSSTLMKNGGHRRQVSPKPVKMSGPKGQSQSPDLLGEVHAADRGKKCLVLDLDETLIHSSFQPVEDADFVIPIVIEGSQYQVYVLKRPGVDGFLERVGRDYEVVIFTASLSLYADPLLDELDVHKVIRHRLYRESCTFFQGSYVKDMRRLGRDISQVILVDNSPLSYMFQPENAIGCSSYIDATSDVELGVIAAFLEDVKECEDVREHCRNWRKWGDLGI 418
+ +PR A+ +P + G +P RK +V ++ + + +F+ + D GN P +T+ KD+ PS + +H +KDGK L SC T F M SD D E V++S P+ S + G G LL ++H D GKKCLVLDLDETL+HSSF+ V ADFVIP+ IE + VYV+KRPGVD FL + + YE+VI+TASL+ YADPLLD LD +VIR RL+RESC +++G+YVKD+ L RD+SQ I++DNSP SY F PENAI CSS+ID D EL IAAFL+ VK+ EDVR C WR+W D+ I
Sbjct: 91 YNNTPRTAASTPSPQYGVRSNGDLRSPGQRKSPIVVPKDSAEEAAIPDFITQTDRYGNASTPRSATAVKDARLEH------PSGMKPHLH-VNKDGKLTEEPESL-DSC-------------TDAFLDSFRSMCCCLLSDTDDRETVQSSMEPAK------------SKDSIIDCGRAG------LLPDIHPDDTGKKCLVLDLDETLVHSSFRAVPGADFVIPVQIEDVVHFVYVMKRPGVDEFLVEMAKHYEIVIYTASLNKYADPLLDLLDPERVIRTRLFRESCVYYEGNYVKDLSLLDRDLSQAIIIDNSPSSYSFHPENAIDCSSFIDDPKDRELDQIAAFLKGVKDVEDVRGVCHLWREWPDVDI 423
BLAST of EWM29185.1 vs. NCBI_GenBank
Match: gi|1210524999|dbj|GAX16191.1| (carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase [Fistulifera solaris]) HSP 1 Score: 241.121 bits (614), Expect = 2.606e-71 Identity = 114/187 (60.96%), Postives = 142/187 (75.94%), Query Frame = 0
Query: 232 LLGEVHAADRGKKCLVLDLDETLIHSSFQPVEDADFVIPIVIEGSQYQVYVLKRPGVDGFLERVGRDYEVVIFTASLSLYADPLLDELDVHKVIRHRLYRESCTFFQGSYVKDMRRLGRDISQVILVDNSPLSYMFQPENAIGCSSYIDATSDVELGVIAAFLEDVKECEDVREHCRNWRKWGDLGI 418
LL ++H D GKKCLVLDLDETL+HSSF+ V ADFVIP+ IE + VYV+KRPGVD FL + + YE+VI+TASL+ YADPLLD LD +VIR RL+RESC +++G+YVKD+ L RD+SQ I++DNSP SY F PENAI CSS+ID D EL IAAFL+ VK+ +DVR C WR+W D+ I
Sbjct: 235 LLPDIHPDDTGKKCLVLDLDETLVHSSFRAVPGADFVIPVQIEDVVHFVYVMKRPGVDEFLVEMAKHYEIVIYTASLNKYADPLLDLLDPERVIRTRLFRESCVYYEGNYVKDLSLLDRDLSQAIIIDNSPSSYSFHPENAIDCSSFIDDPKDRELDQIAAFLKGVKDVKDVRGVCHLWREWPDVDI 421 The following BLAST results are available for this feature:
BLAST of EWM29185.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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