rna1541, rna1541 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1541
Unique Name	rna1541
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3126
Alignment location	CM002457.1:895358..897589 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100007g29.6522.mrna
Orig protein id	gnl\|cribi\|Naga_100007g29.6522
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002457.1	supercontig	CM002457.1:895358..897589 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100007g29	gene1485	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29195.1	cds1538	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1541	rna1541-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002457.1:895358..897589-
coding sequence from alignment at CM002457.1:895358..897589-

mRNA sequence

>rna1541 ID=rna1541|Name=rna1541|organism=Nannochloropsis gaditana|type=mRNA|length=3126bp
ACATGATTCTGCCTGGATAATACAGGGAAAATGCTGATACAAACCCGTGT
TTTCAAAAATTCAAATCGGAAGATGCTTCAACAAAGTCGACTGTGTTTAT
TACTCCTTGCCTTCACCTTTCGTTTCAGGTCTTATAAACACAGGTCTTGC
TGTTCAAATTTTGGAGTAAATTAGCTATATAAAATAAAGTATAAGCAGAT
TGACAAGCATTCTGCTGGGTGGCCTTTTGGAATATTGGTTTCGTGCACTG
CATGTAGATTTCAAAAGGCAAGCACAAGGTTCTCTCATCTTGCGAAGGCG
ACGCCTGGGGTGATCAAAGGAAGTAAAAATTGCATGACAAGTTCAGGGAT
AATCAAGCTGAGATATATTCAAAATTTGCATACTTTCAATTAGCTACCTT
ATGTGATGTCTCCACTATTCATGTCCTGGGTATTTCTATCGACCGCTTGT
GCCATCAGGTTAGAGCAATTATAAAATTACGACGCGAAACTTGACGAACA
CAAAGGAAGTAAATCGAAGACATTTTCTGTAGAAGCATGGTGCACATATG
ATCTCAACTTTTGAAGGGGATGCACATCATCCATGGACTTTCAGAAATGG
ACATCTCTACTACCAGCATCGCGGTTCAAGGTATCGATTAAGAACTTGTA
CCAATACTTGCCCAATTTTCACATGTGCTCCTGGGACACTCTTCAACAAG
TTTAGAAGGGCTAAAGTTTAATGAGAATTTTAAGGGAGAGAAAAAGAAGC
TGACTTAATGTGAGAGTAAATATCATGGTCTCTTCAATGCGGCTTCAAAC
AATTAAGGAGGTACGAGTGTGCTAGCGATGAGCAAGATAAAAACTGTTTT
CAGAAGGGATTTACAAATTCTATTTCAGAAATGCTTTACTTTCAAACAAT
AGAGATGACGATTTTTACCAAGGTAATTGATCTAAAATGTGGGACATTGG
AGACGCAAAGAAAGTGAGGTACCGAATCAGGAGGGGTGATGCCTATCGAT
GGTGACTCTTGAGAGCTTCAACACATTGAGCATCAAGTATAGTCATTTGA
CGAGTTTCATATAAAAATATGATTTCCCTTTTACAGACCTGAATGCTGTG
AGCGGCAAGAAGGCCGTTGCCGTGGCAACTGAGCGGGCCGGAAATGCCCC
CGTAAAAACAATATAGTTCTTTGAGCGAATAAAACATAAAAAGATATCGT
CACGAGGATTTATTCATCAGACGATCCCTTTTCTAAGTTGCTCAGAGGCA
AATTCATGTTAGTCGAGCGCAACCCCACATCAGCTTTCCGCTGCTGTCGC
ACTGCATTTGTTCTGTTATCACAATGCCCGTTGAACCTTTCGATTTCAGA
ATCGTTTGTTCAGAAGATCATTAATATGCGCAAACGTTCGTAGTTTGTTT
TTGTGTAGCAATCGAGCAAAAAAATATTCCAGAGAAGGAGGGAAAAAAGC
ACCGTGGGGAGGAGGTTGAAAACACCTGTAGCTACATTTTCAATTCATCT
CGACTTACGCGTTGAGGTATTTTTTTTGCTCAGGAAGCGATGTCCGTAAT
GCTGGAAACGACGTTGGGGGAGTTAGTGGTAGACCTGTACTGCGACAAGT
GCCCGCTGGCTGCCAAAAATTTCTTGAAGCTCTGCAAGACGAAGTACTAC
AACGATGTGCTGGTTTACAATGTACAACAGAATTTTATGATTCAGACAGG
AGACCCAAGTGGTACAGGTCGTGGGGGCACATCTATATACGGCATGCTGT
ACGGGGAGCAGGCCAAATATTTTGAGGACGAAATCCGCCTACCCCAATTA
AAGCACAGCCGTCCAGGCTTGGTATGCATGGCCTCAAGCGGGGAAAACCA
GAACACTTCCCAGTTTTACATCACGATGCGCGGTGAGGATATGGAGTTCT
TGGACGGAAAGCACACAATATTCGGAGAAGTGGCGGAAGGGCTTGACACC
GTCTTGAAAGAGATAAATGAATTGTACTGCGATACGGACGGCCGCCCCTA
CCGTGACGTGCGCATACTCCACACCTACGTCCTCGATGATCCTTTCGACG
ACCCAAAGGGCATTGAAGACCTTATTCCAGACGCATCTCCCGCTCGAGGG
CGGCCGGAAGCGGAAAGCGTGAACCCTCGTTTGATCGACCTGGAGGACGA
GGAGGATGGGTTGACTGCTGAGGCCTTGGAGGAGCGTATCCGCGAGGTGG
AGGCAAATAAGAGGGCTGTGGTCCTTGAAATGATTGGCGACTTGCCAGAT
GCAGAAATAAAGCCTCCAGAGAACGTCTTGTTTGTCTGTAAGCTGAATCC
TATCACGACGGACGAGGATTTAGAGATCATTTTCAGTCGTTTCGGGACTG
GCGTCAAAGCAGAAATCTGCCGCGACCCGGTGACAGGAGACTCACTAAAC
TACGCCTTCGTCGAATTCGACGACGTCGAGAGCTGCGAAGAAGCCTATAA
GAAGATGAATAATGCCCTCGTGGACGACAGGCGCATCAAGGTGGATTTCT
CTCAGTCCGTGGCGAAACAGTGGAACCGTTACACCATGCGCCCGCGCGGC
AGCACGAAGATCAAGAGCCGAGGGGCAGGCTTCCAGGAGCGCTCGCCCGA
TGCCTCAACACTCCTCTCTGCTTCCTCGGCTGCCCGCGCTGGTAATGGGG
GGGGAAGGAACGGGAAGGGCTCTGGCCTTGAATCTGGTCCACGTACGTCT
GTGCCAGCTCCGAAGAGCCGTTGGGAGGAAAGTGCGGCTGGCAAGGCTAG
TCACGGGGCTGTAGAAGTAAGCAACAGGAAACGGCCCGCCTCTCCGACGG
GGTATCAGGAGGGCAGAGGTCGGGACTCGGGGGGAGAGGCGGGGGGGCGG
GAGGGCCGAAAAGGGAGGCGTGAAGCTCAAGGAGAGAGGTCTCAACGCTC
ACGGTCACGCAGTCTGGAGCGGATTCGGAAACAAATTCGGCGATCGGGCT
CACCATCGCGGGAGCGACGCGAAAGGAGGGACGGATTGCGCGAAAGGGAC
TGGCGGGACCGGAGAGAGAGGAGTCGAGATCGATCGCAGTCTAGGGAACT
CCGCAGGCGCAGATAGTGCGTACTGCGGAATACCAATGCTAGCCAATCTA
ACGAAAAATGCCATGGTACCTGTATT

protein sequence of rna1541

>rna1541-protein ID=rna1541-protein|Name=rna1541|organism=Nannochloropsis gaditana|type=polypeptide|length=617bp
MTSRGPLSRRCIFWAIHTAGLLHQLALVRAFLPPVVPPTSLHSTSKPGPL
STADIFPAPTIQVRKTWHLGGSWTISSHYIPPTEATSPSSCVVMQATSAK
ETTKGTMNARRKNMLEEEFRRISKQDQADLISLSSFFTSGEVAELLKEKL
LAKAEVESFWIGELGDKAEPADLDAFLAVYEKIDALFEEEEEDEDVEVGQ
AGAVKGITLEEFLASGDVSRYLEENLISREEVESMWAAEAGFRGASAGVR
AVLSAEGSMRVYAGIEDLLEEVVDDAEKSDETQTAVPEENEGKELRAEYM
AAIGGDLEAEMDYAAFLRTNELPDLLEEGLVSREEVGSMWDKVRSERGTG
DVVDFAGFQALSSALDDLFLEEGEEEEEVAPRQTAAAAYKAAAAAQAKEA
EPEGLRIVGPAKPQLKEMLASVRLAGLLEEDKALDDYVGALVEAMLDEEA
NLAARDELEIADLQKAMEGEWELAYSTSRTMRYNRGLSGLGKSLPKVEFL
GFSQSIAVNGFALETVYTERLRTLGRDLNVVVEGAWELKDVVSIMSGELC
LIMDVLPATITYGFMRERIETGWKGVRVLNRCELLYLDEDLRVMKGQSSD
SYFVFSRRTEGAADRMS

mRNA from alignment at CM002457.1:895358..897589-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1541 ID=rna1541|Name=rna1541|organism=Nannochloropsis gaditana|type=mRNA|length=2232bp|location=Sequence derived from alignment at CM002457.1:895358..897589- (Nannochloropsis gaditana)
TCTTACACACATTGCAGCTGTATGGAACCGCCACTCATCCGGAAAAATCG
ATCAAGTATTAAAATAAAAAAATTAAAAAATTTCGATATTCGAAGGAATT
TCACTTGGTTGTGCATAAAATCAACGTCGGGGTGCTGAAACACTTCTTCC
GACAGAAGTCAGCCGTAGTATATAGCCGCTGACCTATCGGTGAATGTAGG
AAACTAAACTTGCCCCCAATTGAAACGCACACAACTACCGCAGGACAAAT
ATGACTTCCAGAGGACCTTTATCAAGACGATGCATTTTTTGGGCCATTCA
CACGGCGGGGTTGCTCCATCAGCTCGCTCTAGTTCGCGCGTTCCTCCCCC
CTGTCGTGCCTCCTACTTCCCTGCACTCGACAAGCAAACCGGGACCGCTA
TCAACCGCAGACATTTTCCCCGCACCAACTATACAAGTGCGCAAAACCTG
GCATCTTGGTGGCTCCTGGACCATTTCGTCTCACTACATACCTCCCACCG
AAGCCACTTCTCCTTCCTCATGCGTCGTCATGCAAGCCACCTCTGCAAAA
GAAACAACCAAAGGGACCATGAATGCTCGGAGGAAAAATATGCTTGAGGA
AGAATTTCGTCGGATAAGTAAACAGGATCAGGCCGATCTGATATCCTTAT
CTTCATTTTTCACTAGCGGAGAAGTTGCAGAGCTTTTAAAGGAAAAATTG
CTTGCCAAGGCCGAGGTGGAATCCTTCTGGATAGGAGAGCTCGGTGACAA
GGCGGAGCCGGCAGATTTGGACGCTTTCTTGGCAGTTTACGAAAAAATTG
ATGCATTGTTTGAGGAAGAAGAGGAGGATGAGGATGTTGAGGTGGGGCAG
GCGGGTGCCGTGAAGGGGATTACGCTCGAGGAGTTCCTGGCTTCTGGAGA
TGTCAGTCGATATTTGGAAGAAAATCTCATCAGTAGAGAGGAGGTGGAGT
CCATGTGGGCCGCGGAGGCCGGCTTTCGGGGAGCAAGCGCGGGTGTCCGG
GCCGTGTTGAGCGCGGAGGGATCCATGCGGGTGTACGCCGGGATAGAGGA
CCTGCTGGAGGAGGTGGTGGACGATGCGGAGAAGAGCGATGAGACGCAGA
CGGCCGTGCCAGAGGAGAACGAAGGGAAGGAGTTGCGGGCAGAGTACATG
GCGGCGATCGGTGGGGACCTGGAGGCAGAGATGGACTACGCCGCCTTTCT
GAGAACGAACGAGCTGCCCGACCTGCTCGAGGAGGGGCTGGTATCGCGGG
AGGAGGTGGGGTCGATGTGGGACAAGGTCCGGTCTGAACGAGGCACGGGA
GACGTGGTGGATTTCGCGGGCTTCCAAGCCCTGTCCTCGGCCTTGGACGA
TCTCTTCCTGGAGGAGGGAGAGGAGGAGGAGGAGGTCGCGCCTCGGCAGA
CGGCGGCAGCGGCCTACAAAGCTGCGGCCGCCGCGCAGGCCAAAGAGGCG
GAGCCCGAAGGTTTGCGAATCGTGGGCCCTGCCAAGCCGCAGTTGAAGGA
AATGCTGGCCTCGGTGCGATTGGCGGGCCTGCTGGAAGAGGACAAGGCCC
TGGACGACTACGTGGGGGCGCTGGTGGAGGCGATGCTCGACGAGGAGGCC
AATCTGGCGGCGCGGGACGAGCTGGAGATTGCAGACCTGCAGAAGGCCAT
GGAGGGGGAGTGGGAGCTTGCCTACAGCACCTCACGGACCATGCGGTACA
ACCGTGGCTTGAGCGGTCTGGGCAAGTCCCTGCCCAAGGTGGAGTTCCTG
GGGTTCAGCCAGTCCATCGCCGTGAACGGCTTCGCCCTGGAAACGGTCTA
CACGGAGCGACTGAGGACGCTGGGGAGGGACTTGAACGTGGTGGTGGAGG
GGGCCTGGGAGCTGAAGGATGTGGTTTCGATCATGAGCGGAGAGCTCTGC
CTGATCATGGACGTGTTGCCGGCGACCATCACGTACGGCTTTATGAGGGA
GAGAATCGAGACGGGCTGGAAGGGCGTGCGGGTTTTGAACAGGTGCGAGT
TGCTGTACTTGGACGAGGACTTGCGGGTGATGAAAGGCCAGTCCTCGGAC
TCCTATTTCGTGTTCAGCCGGCGGACGGAGGGGGCGGCCGACCGCATGAG
CTAGAGGGCAGGTGGGGAAAGAGGAGGGATGGGAGGCGGTTGTTGTTTCA
AAGAGAATAAAGCTGTGTAGTTCGAGGTGCACGAAAGCAGAAAACAGGGG
GAACAAAGAATACAGGTACCATGGCATTTTTC

Coding sequence (CDS) from alignment at CM002457.1:895358..897589-

>rna1541 ID=rna1541|Name=rna1541|organism=Nannochloropsis gaditana|type=CDS|length=1854bp|location=Sequence derived from alignment at CM002457.1:895358..897589- (Nannochloropsis gaditana)
ATGACTTCCAGAGGACCTTTATCAAGACGATGCATTTTTTGGGCCATTCA
CACGGCGGGGTTGCTCCATCAGCTCGCTCTAGTTCGCGCGTTCCTCCCCC
CTGTCGTGCCTCCTACTTCCCTGCACTCGACAAGCAAACCGGGACCGCTA
TCAACCGCAGACATTTTCCCCGCACCAACTATACAAGTGCGCAAAACCTG
GCATCTTGGTGGCTCCTGGACCATTTCGTCTCACTACATACCTCCCACCG
AAGCCACTTCTCCTTCCTCATGCGTCGTCATGCAAGCCACCTCTGCAAAA
GAAACAACCAAAGGGACCATGAATGCTCGGAGGAAAAATATGCTTGAGGA
AGAATTTCGTCGGATAAGTAAACAGGATCAGGCCGATCTGATATCCTTAT
CTTCATTTTTCACTAGCGGAGAAGTTGCAGAGCTTTTAAAGGAAAAATTG
CTTGCCAAGGCCGAGGTGGAATCCTTCTGGATAGGAGAGCTCGGTGACAA
GGCGGAGCCGGCAGATTTGGACGCTTTCTTGGCAGTTTACGAAAAAATTG
ATGCATTGTTTGAGGAAGAAGAGGAGGATGAGGATGTTGAGGTGGGGCAG
GCGGGTGCCGTGAAGGGGATTACGCTCGAGGAGTTCCTGGCTTCTGGAGA
TGTCAGTCGATATTTGGAAGAAAATCTCATCAGTAGAGAGGAGGTGGAGT
CCATGTGGGCCGCGGAGGCCGGCTTTCGGGGAGCAAGCGCGGGTGTCCGG
GCCGTGTTGAGCGCGGAGGGATCCATGCGGGTGTACGCCGGGATAGAGGA
CCTGCTGGAGGAGGTGGTGGACGATGCGGAGAAGAGCGATGAGACGCAGA
CGGCCGTGCCAGAGGAGAACGAAGGGAAGGAGTTGCGGGCAGAGTACATG
GCGGCGATCGGTGGGGACCTGGAGGCAGAGATGGACTACGCCGCCTTTCT
GAGAACGAACGAGCTGCCCGACCTGCTCGAGGAGGGGCTGGTATCGCGGG
AGGAGGTGGGGTCGATGTGGGACAAGGTCCGGTCTGAACGAGGCACGGGA
GACGTGGTGGATTTCGCGGGCTTCCAAGCCCTGTCCTCGGCCTTGGACGA
TCTCTTCCTGGAGGAGGGAGAGGAGGAGGAGGAGGTCGCGCCTCGGCAGA
CGGCGGCAGCGGCCTACAAAGCTGCGGCCGCCGCGCAGGCCAAAGAGGCG
GAGCCCGAAGGTTTGCGAATCGTGGGCCCTGCCAAGCCGCAGTTGAAGGA
AATGCTGGCCTCGGTGCGATTGGCGGGCCTGCTGGAAGAGGACAAGGCCC
TGGACGACTACGTGGGGGCGCTGGTGGAGGCGATGCTCGACGAGGAGGCC
AATCTGGCGGCGCGGGACGAGCTGGAGATTGCAGACCTGCAGAAGGCCAT
GGAGGGGGAGTGGGAGCTTGCCTACAGCACCTCACGGACCATGCGGTACA
ACCGTGGCTTGAGCGGTCTGGGCAAGTCCCTGCCCAAGGTGGAGTTCCTG
GGGTTCAGCCAGTCCATCGCCGTGAACGGCTTCGCCCTGGAAACGGTCTA
CACGGAGCGACTGAGGACGCTGGGGAGGGACTTGAACGTGGTGGTGGAGG
GGGCCTGGGAGCTGAAGGATGTGGTTTCGATCATGAGCGGAGAGCTCTGC
CTGATCATGGACGTGTTGCCGGCGACCATCACGTACGGCTTTATGAGGGA
GAGAATCGAGACGGGCTGGAAGGGCGTGCGGGTTTTGAACAGGTGCGAGT
TGCTGTACTTGGACGAGGACTTGCGGGTGATGAAAGGCCAGTCCTCGGAC
TCCTATTTCGTGTTCAGCCGGCGGACGGAGGGGGCGGCCGACCGCATGAG
CTAG

Synonyms

Publications