|
|
Properties
| Property Name | Value |
|---|
| Product | Cobalamin (vitamin B12) biosynthesis CbiX |
| Orig transcript id | gnl|cribi|Naga_100007g36.6524.mrna |
| Orig protein id | gnl|cribi|Naga_100007g36.6524 |
| Gene | SirB |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002457.1 | supercontig | CM002457.1:881789..884100 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna1535 ID=rna1535|Name=rna1535|organism=Nannochloropsis gaditana|type=mRNA|length=996bp
ATGCCGTCCTCGTCTCATGTATTTGCACAAAAACAGACGATTGTGCAGAG
TAGCGACAAGATGGAGTTGAAAACGCCCTCACCACGACCACTTGACTCAA
TTCACGCCTCAGAGGCGGCCTCGGTGCCTACTGATGTGCCTTCCGACGAA
CCTCAGGACGCGGCGCGTCTCAAAGCCAACACAAGTGTTGACGTGATAGA
GGTGAAGGGCCTATTGCGACAGGCGCTAGGTCAAGCCGGCATCTTGGACT
ACGTGATGTCTATGCTTCGAGCCAGTGCATACGTAGCAATCGATGGAACT
CGGCCGGCACAGAGTGCTGAGGCTAGTGCGTCGGATTTACGCCTGATACA
TCCCAACCAAGACTTACTGTCTTTACGAGAAATGGATGAGGGCCGATTGC
TATTAAATCTTACGGCTGAGCTGCTTAAAAGTATGAATATGCAGCAGACG
TTGAGCGTATTCGAACGAGAAGCCCACCTACACCCCAACGGTCCCATACT
TTCAGAGGAGGACGAGATCACCGCGGAGAAGGAGCGATTATCGTGGTTCT
CTTCTGTACGGGAAGAGGGTGCGCAGGTGCTCGGGCTCGACGCTCATGCA
ACCGGTCCTCTTCTCTTACAGCTCATGCGACGACACCAGCAACACGTGGT
GAGCAGGCTTCATCAGGGCAGAGGGGAAGAAAAGGAAATGCTCGACGGCA
CAGTGCACCGTGACATTCAGCAGTCGCCGGCCCAAACAGCAGCTGTGGAG
AGGGAAAATGGCGGAGAGAATGTGAATCAAGGCGCTGACGAGGATACAAC
GCATGCAGAGGGCGAGATGGCCGATAGGAACAGATGTAGCGCTAGGAATG
AAGAGTCTATGAGTGCAAGGAAGTCGAAGTTGAGCAAAAGCAATGATGCC
AGGAGTATCGGCAGCGAAACACTCGGAAATGGCGAAAGCGGAGGGCATGG
GAGGCTTGAGCGGTCCATCAATGATAACTGTATGAAATCTGATTGA back to topprotein sequence of rna1535 >rna1535-protein ID=rna1535-protein|Name=rna1535|organism=Nannochloropsis gaditana|type=polypeptide|length=257bp
MAGRLCVAPVIIFLVVGMALTGEGFLFKLPLLTRSETRGHATSGGTGNRI
IAFKMQSPSRSMNSWVPKDRRNMLETLSTATQHLEDLGIEEDAHGFQEQQ
EQQRRWRRQQQKPKEYKVGVIVVDHGSRRKEANEALESVASEFKALSGYE
LVEPAHMELCEPSIATAFGRCVERGATFIICHPFFLSRGRHVAEDIPNLL
EEAASIFPGVEWALSQPLGLQADIPRLMQQAVEECIAEKNIQSEDHADGL
PMPEFNI back to topmRNA from alignment at CM002457.1:881789..884100+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna1535 ID=rna1535|Name=rna1535|organism=Nannochloropsis gaditana|type=mRNA|length=2312bp|location=Sequence derived from alignment at CM002457.1:881789..884100+ (Nannochloropsis gaditana)
GCTCAACGTCTGCTGCATATTCATACTTTTAAGCAGCTCAGCCGTAAGAT
TTAATAGCAATCGGCCCTCATCCATTTCTCGTAAAGACAGTAAGTCTTGG
TTGGGATGTATCAGGCGTAAATCCGACGCACTAGCCTCAGCACTCTGTGC
CGGCCGAGTTCCATCGATTGCTACGTATGCACTGGCTCGAAGCATAGACT
GTTTTGATTTGCAAGTTGAATGATCGAGGATTTAGTAATTGAGGATTTAA
ACCTGCCCGGATGCGAGGCTAGCTGGGGACGTAGTGCGTACCATCACGTA
GTCCAAGATGCCGGCTTGACCTAGCGCCTGTCGCAATAGGCCCTTCACCT
CTATCACGTCAACACTTGTGTTGGCTTTGAGACGCGCCGCGTCCTGAGGT
TCGTCGGAAGGCACATCAGTAGGCACCGAGGCCGCCTCTGAGGCGTGAAT
TGAGTCAAGTGGTCGTGGTGAGGGCGTTTTCAACTCCATCTTGTCGCTAC
TCTGCACAATCGTCTGTTTTTGTGCAAATACatgagacgaggacggcatG
GCAGTCTAGCAAGTGCTGTGATGTGCGTCGTCCGCCCCAACCGGAggcag
gcggagaggaaCATTCCCCCTCGCGAACAAGCGACAGGCGTGCGAGACGA
CCACCCCTGCGAGTCGCCATCTTCTGATTGACCCACCtgtttcctcgtcc
ccaggGAAATCAGGCGAATTGGGGTATACAACGCCATCAGCGGGCACCCA
ACAATCAAGTTCGTCCTTGCTTGGCGTGATATTGGCCTCCTTTAAGACGG
CGCCTTCCAGGGATCGGTAGCAGGCGCGTCTGGAATTGCATTGTAGCTCA
CACGATAAAaaatcccctcctcctcccgtgaAGAGCGGATCTGCATTTCT
TAACTTCTTCAAACCATCCTTAGTATGGCCGGACGCCTATGCGTTGCGCC
GGTTATCATTTTTTTGGTAGTGGGGATGGCACTCACAGGTGAAGGCTTTC
TCTTCAAGTTGCCCCTACTGACACGCAGCGAAACCCGCGGTCACGCCACT
AGCGGCGGTACAGGGAATCGAATCATAGCGTTTAAAATGCAATCACCTTC
CCGTTCAATGAATTCATGGGTGCCGAAAGACCGCCGGAATATGCTGGAGA
CATTATCCACCGCGACCCAGCACCTGGAGGACCTGGGTATTGAGGAGGAC
GCTCACGGCTTTCAAGAGCAACAGGAGCAAcaaagaagatggaggagaca
acAACAAAAGCCAAAAGAGTACAAGGTGGGTGTGATCGTCGTCGACCATG
GCTCCCGTCGGAAAGAGGCCAACGAGGCTCTCGAGAGTGTGGCCTCCGAA
TTCAAAGCACTGAGTGGGTACGAGCTCGTGGAGCCTGCGCACATGGAGCT
TTGTGAGCCCTCGATCGCCACAGCATTTGGTCGGTGCGTTGAACGCGGGG
CCACTTTCATAATCTgccatcccttcttcctatCCCGCGGGCGGCACGTG
GCAGAGGACATCCCCAACCTCTTAGAGGAAGCCGCTTCCATCTTCCCGGG
TGTGGAGTGGGCCCTATCGCAGCCACTGGGGTTGCAGGCTGATATCCCCC
GCTTAATGCAGCAAGCCGTTGAGGAATGCATCGCGGAGAAGAACATCCAG
TCGGAGGACCACGCAGACGGGCTGCCCATGCCGGAGTTCAATATTTAGGG
TCTTGAACCGGAGCGACAGGAGCAGGCCTTGATGGGAAAAGAATAAGCAA
TGGACAGTCGACTTAACGTCCATGGAGCATTTTTGTTTCGTGTAGGTAGG
ACATGGAAGAaaagctgttgctgccgtgGTAGGCGTTCGGCCTCCGTGCG
AGATTTTTGCAAATTGAGGTGCTGCGGATCATCCCGGCTGCTGAgtcgtg
ggagagggaactTTTCCTCGGAATTAAAGTGGATACCTGTACAATTGATT
GGCATAATGTGAAGGACTTTGGTTTGCTTGAGTGCAGTACAGCAATGCGT
GTGCAAGAAAAAGCAGAAAACAGAAACTTGTAAGTACATCAGTGTGATCG
GGTCATAGACTCGTACGATTATTACTTGGCTCAGAGGTCAATTAACCGGC
TTCGCATGCTGTCGTGCACACTGTGGATGGAGCGTGCACAAAGCCCCAGA
AAGGGCCTCCCGCGGTCCCTTTACTTGGTGTCAACCCCGTCTTGGTcgtt
tctctctcctctctccgacCCTTCCCTATCCCTCATcacgtcgtcctctc
ctctcgcTAAGCGCCATATCCCGCCCAGCCTATCCATGTCGAGATTGCCA
CCGCACAGTATC back to topCoding sequence (CDS) from alignment at CM002457.1:881789..884100+ >rna1535 ID=rna1535|Name=rna1535|organism=Nannochloropsis gaditana|type=CDS|length=774bp|location=Sequence derived from alignment at CM002457.1:881789..884100+ (Nannochloropsis gaditana)
ATGGCCGGACGCCTATGCGTTGCGCCGGTTATCATTTTTTTGGTAGTGGG
GATGGCACTCACAGGTGAAGGCTTTCTCTTCAAGTTGCCCCTACTGACAC
GCAGCGAAACCCGCGGTCACGCCACTAGCGGCGGTACAGGGAATCGAATC
ATAGCGTTTAAAATGCAATCACCTTCCCGTTCAATGAATTCATGGGTGCC
GAAAGACCGCCGGAATATGCTGGAGACATTATCCACCGCGACCCAGCACC
TGGAGGACCTGGGTATTGAGGAGGACGCTCACGGCTTTCAAGAGCAACAG
GAGCAAcaaagaagatggaggagacaacAACAAAAGCCAAAAGAGTACAA
GGTGGGTGTGATCGTCGTCGACCATGGCTCCCGTCGGAAAGAGGCCAACG
AGGCTCTCGAGAGTGTGGCCTCCGAATTCAAAGCACTGAGTGGGTACGAG
CTCGTGGAGCCTGCGCACATGGAGCTTTGTGAGCCCTCGATCGCCACAGC
ATTTGGTCGGTGCGTTGAACGCGGGGCCACTTTCATAATCTgccatccct
tcttcctatCCCGCGGGCGGCACGTGGCAGAGGACATCCCCAACCTCTTA
GAGGAAGCCGCTTCCATCTTCCCGGGTGTGGAGTGGGCCCTATCGCAGCC
ACTGGGGTTGCAGGCTGATATCCCCCGCTTAATGCAGCAAGCCGTTGAGG
AATGCATCGCGGAGAAGAACATCCAGTCGGAGGACCACGCAGACGGGCTG
CCCATGCCGGAGTTCAATATTTAG back to top
|