EWM29197.1, cds1532 (CDS) Nannochloropsis gaditana

Overview
NameEWM29197.1
Unique Namecds1532
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:882713..883486 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29197.1
ProductCobalamin (vitamin B12) biosynthesis CbiX
Orig transcript idgnl|cribi|Naga_100007g36.6524.mrna
GeneSirB
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:882713..883486 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0009058biosynthetic process
GO:0009236cobalamin biosynthetic process
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0016852sirohydrochlorin cobaltochelatase activity
Vocabulary: INTERPRO
TermDefinition
IPR002762Cbl_biosynth_CbiX
Homology
BLAST of EWM29197.1 vs. NCBI_GenBank
Match: gi|585111717|gb|EWM29197.1| (Cobalamin (vitamin B12) biosynthesis CbiX [Nannochloropsis gaditana])

HSP 1 Score: 531.946 bits (1369), Expect = 0.000e+0
Identity = 257/257 (100.00%), Postives = 257/257 (100.00%), Query Frame = 0
Query:    1 MAGRLCVAPVIIFLVVGMALTGEGFLFKLPLLTRSETRGHATSGGTGNRIIAFKMQSPSRSMNSWVPKDRRNMLETLSTATQHLEDLGIEEDAHGFQEQQEQQRRWRRQQQKPKEYKVGVIVVDHGSRRKEANEALESVASEFKALSGYELVEPAHMELCEPSIATAFGRCVERGATFIICHPFFLSRGRHVAEDIPNLLEEAASIFPGVEWALSQPLGLQADIPRLMQQAVEECIAEKNIQSEDHADGLPMPEFNI 257
            MAGRLCVAPVIIFLVVGMALTGEGFLFKLPLLTRSETRGHATSGGTGNRIIAFKMQSPSRSMNSWVPKDRRNMLETLSTATQHLEDLGIEEDAHGFQEQQEQQRRWRRQQQKPKEYKVGVIVVDHGSRRKEANEALESVASEFKALSGYELVEPAHMELCEPSIATAFGRCVERGATFIICHPFFLSRGRHVAEDIPNLLEEAASIFPGVEWALSQPLGLQADIPRLMQQAVEECIAEKNIQSEDHADGLPMPEFNI
Sbjct:    1 MAGRLCVAPVIIFLVVGMALTGEGFLFKLPLLTRSETRGHATSGGTGNRIIAFKMQSPSRSMNSWVPKDRRNMLETLSTATQHLEDLGIEEDAHGFQEQQEQQRRWRRQQQKPKEYKVGVIVVDHGSRRKEANEALESVASEFKALSGYELVEPAHMELCEPSIATAFGRCVERGATFIICHPFFLSRGRHVAEDIPNLLEEAASIFPGVEWALSQPLGLQADIPRLMQQAVEECIAEKNIQSEDHADGLPMPEFNI 257          
BLAST of EWM29197.1 vs. NCBI_GenBank
Match: gi|298707922|emb|CBJ30308.1| (sirohydrochlorin ferrochelatase, putative chloroplast precursor [Ectocarpus siliculosus])

HSP 1 Score: 143.665 bits (361), Expect = 9.583e-39
Identity = 70/121 (57.85%), Postives = 85/121 (70.25%), Query Frame = 0
Query:  117 KVGVIVVDHGSRRKEANEALESVASEFKALSGYELVEPAHMELCEPSIATAFGRCVERGATFIICHPFFLSRGRHVAEDIPNLLEEAASIFPGVEWALSQPLGLQADIPRLMQQAVEECIA 237
            +VGVIV DHGSRR+ AN  L  VA  +++ SG+E+VE AHMEL EPSI  AF RCV  GA  ++ HPFFLS GRHV  DIP L+  AA   PGV W +S+PLGLQ  +PR+M  AV E +A
Sbjct:   86 RVGVIVCDHGSRRENANTMLFEVAERYRSFSGFEIVEAAHMELAEPSIEEAFDRCVAAGAQKVVLHPFFLSPGRHVTSDIPALMVAAAKRHPGVGWVVSEPLGLQELMPRVMHAAVSESVA 206          
BLAST of EWM29197.1 vs. NCBI_GenBank
Match: gi|87290288|gb|EAQ82176.1| (cbiX protein [Blastopirellula marina DSM 3645])

HSP 1 Score: 132.494 bits (332), Expect = 3.311e-35
Identity = 66/142 (46.48%), Postives = 90/142 (63.38%), Query Frame = 0
Query:  109 QQQKPKEYKVGVIVVDHGSRRKEANEALESVASEFKALSGYELVEPAHMELCEPSIATAFGRCVERGATFIICHPFFLSRGRHVAEDIPNLLEEAASIFPGVEWALSQPLGLQADIPRLMQQAVEECIAEKNIQSEDHADGL 250
            Q + P    +G++VVDHGSRR  +N+ L  V   F+  +G  +VE AHMEL EPSIA AF RCV +GA  +I HP+FLS GRH +EDIP L  +AA+  PGV   ++ PLGL   +  +M + +E C+A    + ED A G+
Sbjct:    2 QSETPNHETIGIVVVDHGSRRAASNDLLLEVVQLFRQTTGRPIVEAAHMELAEPSIAAAFARCVAQGAGLVIVHPYFLSPGRHWSEDIPRLAAQAAAQHPGVRHMVTAPLGLHQKMAEIMAERIEVCLA--RCRGEDVACGV 141          
BLAST of EWM29197.1 vs. NCBI_GenBank
Match: gi|1174223487|ref|WP_081444667.1| (hypothetical protein [Blastopirellula marina])

HSP 1 Score: 133.265 bits (334), Expect = 4.314e-35
Identity = 67/144 (46.53%), Postives = 91/144 (63.19%), Query Frame = 0
Query:  107 RRQQQKPKEYKVGVIVVDHGSRRKEANEALESVASEFKALSGYELVEPAHMELCEPSIATAFGRCVERGATFIICHPFFLSRGRHVAEDIPNLLEEAASIFPGVEWALSQPLGLQADIPRLMQQAVEECIAEKNIQSEDHADGL 250
            R Q + P    +G++VVDHGSRR  +N+ L  V   F+  +G  +VE AHMEL EPSIA AF RCV +GA  +I HP+FLS GRH +EDIP L  +AA+  PGV   ++ PLGL   +  +M + +E C+A    + ED A G+
Sbjct:   38 RLQSETPNHETIGIVVVDHGSRRAASNDLLLEVVQLFRQTTGRPIVEAAHMELAEPSIAAAFARCVAQGAGLVIVHPYFLSPGRHWSEDIPRLAAQAAAQHPGVRHMVTAPLGLHQKMAEIMAERIEVCLA--RCRGEDVACGV 179          
BLAST of EWM29197.1 vs. NCBI_GenBank
Match: gi|145354659|ref|XP_001421596.1| (predicted protein, partial [Ostreococcus lucimarinus CCE9901] >gi|144581834|gb|ABO99889.1| predicted protein, partial [Ostreococcus lucimarinus CCE9901])

HSP 1 Score: 129.798 bits (325), Expect = 1.843e-34
Identity = 62/122 (50.82%), Postives = 83/122 (68.03%), Query Frame = 0
Query:  119 GVIVVDHGSRRKEANEALESVASEFKALSGYELVEPAHMELCEPSIATAFGRCVERGATFIICHPFFLSRGRHVAEDIPNLLEEAASIFPGVEWALSQPLGLQADIPRLMQQAVEECIAEKN 240
            GV+VVDHGSRR  +NE LE  A+ +   +G  +VEPAHMEL  P+IA AF RCVERGA  ++  PFFLS GRH  EDIP L++EAA+  PGV++ +S P+GL   +  ++   +  C+A  N
Sbjct:    1 GVVVVDHGSRRAASNEQLERFAALYATATGRAVVEPAHMELAPPTIADAFERCVERGANVVVVAPFFLSPGRHWQEDIPRLVDEAAAAHPGVKYLISAPIGLHPLMAEVIDSRLRHCLAHVN 122          
BLAST of EWM29197.1 vs. NCBI_GenBank
Match: gi|1028967927|ref|XP_016727493.1| (PREDICTED: sirohydrochlorin ferrochelatase, chloroplastic-like [Gossypium hirsutum])

HSP 1 Score: 129.798 bits (325), Expect = 2.633e-33
Identity = 62/122 (50.82%), Postives = 80/122 (65.57%), Query Frame = 0
Query:  117 KVGVIVVDHGSRRKEANEALESVASEFKALSGYELVEPAHMELCEPSIATAFGRCVERGATFIICHPFFLSRGRHVAEDIPNLLEEAASIFPGVEWALSQPLGLQADIPRLMQQAVEECIAE 238
            K GVI+VDHGSRRKE+N  L    + F+  SGY +VEPAHMEL EPSI  AFG CV+RGA  +I  PFFL  GRH  +DIP L  +AA   PGV + ++ PLGL   +  +M   ++ C++ 
Sbjct:   70 KDGVIIVDHGSRRKESNLMLNEFVAMFREKSGYPIVEPAHMELAEPSIKDAFGLCVQRGANHVIVSPFFLFPGRHWYQDIPLLTADAAKDHPGVSYIITAPLGLHELLVDVMNDRIKHCLSH 191          
BLAST of EWM29197.1 vs. NCBI_GenBank
Match: gi|1199289165|gb|OUS44300.1| (hypothetical protein BE221DRAFT_78412 [Ostreococcus tauri])

HSP 1 Score: 128.642 bits (322), Expect = 4.003e-33
Identity = 62/123 (50.41%), Postives = 83/123 (67.48%), Query Frame = 0
Query:  115 EYKVGVIVVDHGSRRKEANEALESVASEFKALSGYELVEPAHMELCEPSIATAFGRCVERGATFIICHPFFLSRGRHVAEDIPNLLEEAASIFPGVEWALSQPLGLQADIPRLMQQAVEECIA 237
            E  +GV++VDHGSRRKE+N  LE    ++  ++G ++VE AHMEL  PSIA AFGRCVERGA  I+  PFFLS GRH  EDIP L++EAA+   GV   +S P+GL   +  ++   +  C+A
Sbjct:   58 EDVLGVVIVDHGSRRKESNAQLEVFVEQYARVTGRDIVEAAHMELASPSIADAFGRCVERGANVIVVAPFFLSPGRHWQEDIPQLVKEAAAAHSGVRHVVSAPIGLHPLMVEVIDSRMRHCLA 180          
BLAST of EWM29197.1 vs. NCBI_GenBank
Match: gi|728834240|gb|KHG13683.1| (Sirohydrochlorin ferrochelatase [Gossypium arboreum])

HSP 1 Score: 129.028 bits (323), Expect = 5.111e-33
Identity = 62/121 (51.24%), Postives = 80/121 (66.12%), Query Frame = 0
Query:  117 KVGVIVVDHGSRRKEANEALESVASEFKALSGYELVEPAHMELCEPSIATAFGRCVERGATFIICHPFFLSRGRHVAEDIPNLLEEAASIFPGVEWALSQPLGLQADIPRLMQQAVEECIA 237
            K GVI+VDHGSRRKE+N  L    + F+  SGY +VEPAHMEL EPSI  AFG CV+RGA  +I  PFFL  GRH  +DIP L  +AA   PGV + ++ PLGL   +  +M   ++ C++
Sbjct:   70 KDGVIIVDHGSRRKESNLMLNEFVAMFREKSGYPIVEPAHMELAEPSIKDAFGLCVQRGANRVIVSPFFLFPGRHWYQDIPLLTADAAKDHPGVSYIITAPLGLHELLVDVMNDRIKHCLS 190          
BLAST of EWM29197.1 vs. NCBI_GenBank
Match: gi|1012343632|gb|KYP54824.1| (Sirohydrochlorin ferrochelatase [Cajanus cajan])

HSP 1 Score: 129.028 bits (323), Expect = 5.255e-33
Identity = 77/204 (37.75%), Postives = 105/204 (51.47%), Query Frame = 0
Query:   41 ATSGGTGNRIIAFKMQSPSRSMN--------SWVPKDRRNMLETLSTATQHLEDLGIEEDAHGFQEQQEQQRRWRRQQQKPKEYKVGVIVVDHGSRRKEANEALESVASEFKALSGYELVEPAHMELCEPSIATAFGRCVERGATFIICHPFFLSRGRHVAEDIPNLLEEAASIFPGVEWALSQPLGLQADIPRLMQQAVEECI 236
            AT+ G  +   AF ++SP  S +         W P    N L   S        + +     GF+E   +  R              VI+VDHGSRRKE+N  L      FK  +GYE+VEPAHMEL EPSI+ AF  CV++GA  +I  PFFLS GRH  +DIP+L  EAA   PGV + ++ PLGL   +  ++   ++ C+
Sbjct:   15 ATNEGLRHTPTAFHLRSPQSSFSVSEIGTNPRWAPFKSSNFLCCSSKPQSLSRFVCLSSQNGGFRENSGEVGRGD-----------AVIIVDHGSRRKESNLLLNDFVEMFKHKTGYEIVEPAHMELAEPSISDAFQSCVKQGANRVIISPFFLSPGRHWNQDIPSLSAEAAKEHPGVSYIVTAPLGLHELLVNVVNDRIKHCL 207          
BLAST of EWM29197.1 vs. NCBI_GenBank
Match: gi|1050559401|ref|XP_017639930.1| (PREDICTED: sirohydrochlorin ferrochelatase, chloroplastic [Gossypium arboreum])

HSP 1 Score: 128.642 bits (322), Expect = 5.937e-33
Identity = 62/121 (51.24%), Postives = 80/121 (66.12%), Query Frame = 0
Query:  117 KVGVIVVDHGSRRKEANEALESVASEFKALSGYELVEPAHMELCEPSIATAFGRCVERGATFIICHPFFLSRGRHVAEDIPNLLEEAASIFPGVEWALSQPLGLQADIPRLMQQAVEECIA 237
            K GVI+VDHGSRRKE+N  L    + F+  SGY +VEPAHMEL EPSI  AFG CV+RGA  +I  PFFL  GRH  +DIP L  +AA   PGV + ++ PLGL   +  +M   ++ C++
Sbjct:   70 KDGVIIVDHGSRRKESNLMLNEFVAMFREKSGYPIVEPAHMELAEPSIKDAFGLCVQRGANRVIVSPFFLFPGRHWYQDIPLLTADAAKDHPGVSYIITAPLGLHELLVDVMNDRIKHCLS 190          
The following BLAST results are available for this feature:
BLAST of EWM29197.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111717|gb|EWM29197.1|0.000e+0100.00Cobalamin (vitamin B12) biosynthesis CbiX [Nannoch... [more]
gi|298707922|emb|CBJ30308.1|9.583e-3957.85sirohydrochlorin ferrochelatase, putative chloropl... [more]
gi|87290288|gb|EAQ82176.1|3.311e-3546.48cbiX protein [Blastopirellula marina DSM 3645][more]
gi|1174223487|ref|WP_081444667.1|4.314e-3546.53hypothetical protein [Blastopirellula marina][more]
gi|145354659|ref|XP_001421596.1|1.843e-3450.82predicted protein, partial [Ostreococcus lucimarin... [more]
gi|1028967927|ref|XP_016727493.1|2.633e-3350.82PREDICTED: sirohydrochlorin ferrochelatase, chloro... [more]
gi|1199289165|gb|OUS44300.1|4.003e-3350.41hypothetical protein BE221DRAFT_78412 [Ostreococcu... [more]
gi|728834240|gb|KHG13683.1|5.111e-3351.24Sirohydrochlorin ferrochelatase [Gossypium arboreu... [more]
gi|1012343632|gb|KYP54824.1|5.255e-3337.75Sirohydrochlorin ferrochelatase [Cajanus cajan][more]
gi|1050559401|ref|XP_017639930.1|5.937e-3351.24PREDICTED: sirohydrochlorin ferrochelatase, chloro... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1535rna1535Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications