EWM29197.1, cds1532 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29197.1 vs. NCBI_GenBank
Match: gi|585111717|gb|EWM29197.1| (Cobalamin (vitamin B12) biosynthesis CbiX [Nannochloropsis gaditana]) HSP 1 Score: 531.946 bits (1369), Expect = 0.000e+0 Identity = 257/257 (100.00%), Postives = 257/257 (100.00%), Query Frame = 0
Query: 1 MAGRLCVAPVIIFLVVGMALTGEGFLFKLPLLTRSETRGHATSGGTGNRIIAFKMQSPSRSMNSWVPKDRRNMLETLSTATQHLEDLGIEEDAHGFQEQQEQQRRWRRQQQKPKEYKVGVIVVDHGSRRKEANEALESVASEFKALSGYELVEPAHMELCEPSIATAFGRCVERGATFIICHPFFLSRGRHVAEDIPNLLEEAASIFPGVEWALSQPLGLQADIPRLMQQAVEECIAEKNIQSEDHADGLPMPEFNI 257
MAGRLCVAPVIIFLVVGMALTGEGFLFKLPLLTRSETRGHATSGGTGNRIIAFKMQSPSRSMNSWVPKDRRNMLETLSTATQHLEDLGIEEDAHGFQEQQEQQRRWRRQQQKPKEYKVGVIVVDHGSRRKEANEALESVASEFKALSGYELVEPAHMELCEPSIATAFGRCVERGATFIICHPFFLSRGRHVAEDIPNLLEEAASIFPGVEWALSQPLGLQADIPRLMQQAVEECIAEKNIQSEDHADGLPMPEFNI
Sbjct: 1 MAGRLCVAPVIIFLVVGMALTGEGFLFKLPLLTRSETRGHATSGGTGNRIIAFKMQSPSRSMNSWVPKDRRNMLETLSTATQHLEDLGIEEDAHGFQEQQEQQRRWRRQQQKPKEYKVGVIVVDHGSRRKEANEALESVASEFKALSGYELVEPAHMELCEPSIATAFGRCVERGATFIICHPFFLSRGRHVAEDIPNLLEEAASIFPGVEWALSQPLGLQADIPRLMQQAVEECIAEKNIQSEDHADGLPMPEFNI 257
BLAST of EWM29197.1 vs. NCBI_GenBank
Match: gi|298707922|emb|CBJ30308.1| (sirohydrochlorin ferrochelatase, putative chloroplast precursor [Ectocarpus siliculosus]) HSP 1 Score: 143.665 bits (361), Expect = 9.583e-39 Identity = 70/121 (57.85%), Postives = 85/121 (70.25%), Query Frame = 0
Query: 117 KVGVIVVDHGSRRKEANEALESVASEFKALSGYELVEPAHMELCEPSIATAFGRCVERGATFIICHPFFLSRGRHVAEDIPNLLEEAASIFPGVEWALSQPLGLQADIPRLMQQAVEECIA 237
+VGVIV DHGSRR+ AN L VA +++ SG+E+VE AHMEL EPSI AF RCV GA ++ HPFFLS GRHV DIP L+ AA PGV W +S+PLGLQ +PR+M AV E +A
Sbjct: 86 RVGVIVCDHGSRRENANTMLFEVAERYRSFSGFEIVEAAHMELAEPSIEEAFDRCVAAGAQKVVLHPFFLSPGRHVTSDIPALMVAAAKRHPGVGWVVSEPLGLQELMPRVMHAAVSESVA 206
BLAST of EWM29197.1 vs. NCBI_GenBank
Match: gi|87290288|gb|EAQ82176.1| (cbiX protein [Blastopirellula marina DSM 3645]) HSP 1 Score: 132.494 bits (332), Expect = 3.311e-35 Identity = 66/142 (46.48%), Postives = 90/142 (63.38%), Query Frame = 0
Query: 109 QQQKPKEYKVGVIVVDHGSRRKEANEALESVASEFKALSGYELVEPAHMELCEPSIATAFGRCVERGATFIICHPFFLSRGRHVAEDIPNLLEEAASIFPGVEWALSQPLGLQADIPRLMQQAVEECIAEKNIQSEDHADGL 250
Q + P +G++VVDHGSRR +N+ L V F+ +G +VE AHMEL EPSIA AF RCV +GA +I HP+FLS GRH +EDIP L +AA+ PGV ++ PLGL + +M + +E C+A + ED A G+
Sbjct: 2 QSETPNHETIGIVVVDHGSRRAASNDLLLEVVQLFRQTTGRPIVEAAHMELAEPSIAAAFARCVAQGAGLVIVHPYFLSPGRHWSEDIPRLAAQAAAQHPGVRHMVTAPLGLHQKMAEIMAERIEVCLA--RCRGEDVACGV 141
BLAST of EWM29197.1 vs. NCBI_GenBank
Match: gi|1174223487|ref|WP_081444667.1| (hypothetical protein [Blastopirellula marina]) HSP 1 Score: 133.265 bits (334), Expect = 4.314e-35 Identity = 67/144 (46.53%), Postives = 91/144 (63.19%), Query Frame = 0
Query: 107 RRQQQKPKEYKVGVIVVDHGSRRKEANEALESVASEFKALSGYELVEPAHMELCEPSIATAFGRCVERGATFIICHPFFLSRGRHVAEDIPNLLEEAASIFPGVEWALSQPLGLQADIPRLMQQAVEECIAEKNIQSEDHADGL 250
R Q + P +G++VVDHGSRR +N+ L V F+ +G +VE AHMEL EPSIA AF RCV +GA +I HP+FLS GRH +EDIP L +AA+ PGV ++ PLGL + +M + +E C+A + ED A G+
Sbjct: 38 RLQSETPNHETIGIVVVDHGSRRAASNDLLLEVVQLFRQTTGRPIVEAAHMELAEPSIAAAFARCVAQGAGLVIVHPYFLSPGRHWSEDIPRLAAQAAAQHPGVRHMVTAPLGLHQKMAEIMAERIEVCLA--RCRGEDVACGV 179
BLAST of EWM29197.1 vs. NCBI_GenBank
Match: gi|145354659|ref|XP_001421596.1| (predicted protein, partial [Ostreococcus lucimarinus CCE9901] >gi|144581834|gb|ABO99889.1| predicted protein, partial [Ostreococcus lucimarinus CCE9901]) HSP 1 Score: 129.798 bits (325), Expect = 1.843e-34 Identity = 62/122 (50.82%), Postives = 83/122 (68.03%), Query Frame = 0
Query: 119 GVIVVDHGSRRKEANEALESVASEFKALSGYELVEPAHMELCEPSIATAFGRCVERGATFIICHPFFLSRGRHVAEDIPNLLEEAASIFPGVEWALSQPLGLQADIPRLMQQAVEECIAEKN 240
GV+VVDHGSRR +NE LE A+ + +G +VEPAHMEL P+IA AF RCVERGA ++ PFFLS GRH EDIP L++EAA+ PGV++ +S P+GL + ++ + C+A N
Sbjct: 1 GVVVVDHGSRRAASNEQLERFAALYATATGRAVVEPAHMELAPPTIADAFERCVERGANVVVVAPFFLSPGRHWQEDIPRLVDEAAAAHPGVKYLISAPIGLHPLMAEVIDSRLRHCLAHVN 122
BLAST of EWM29197.1 vs. NCBI_GenBank
Match: gi|1028967927|ref|XP_016727493.1| (PREDICTED: sirohydrochlorin ferrochelatase, chloroplastic-like [Gossypium hirsutum]) HSP 1 Score: 129.798 bits (325), Expect = 2.633e-33 Identity = 62/122 (50.82%), Postives = 80/122 (65.57%), Query Frame = 0
Query: 117 KVGVIVVDHGSRRKEANEALESVASEFKALSGYELVEPAHMELCEPSIATAFGRCVERGATFIICHPFFLSRGRHVAEDIPNLLEEAASIFPGVEWALSQPLGLQADIPRLMQQAVEECIAE 238
K GVI+VDHGSRRKE+N L + F+ SGY +VEPAHMEL EPSI AFG CV+RGA +I PFFL GRH +DIP L +AA PGV + ++ PLGL + +M ++ C++
Sbjct: 70 KDGVIIVDHGSRRKESNLMLNEFVAMFREKSGYPIVEPAHMELAEPSIKDAFGLCVQRGANHVIVSPFFLFPGRHWYQDIPLLTADAAKDHPGVSYIITAPLGLHELLVDVMNDRIKHCLSH 191
BLAST of EWM29197.1 vs. NCBI_GenBank
Match: gi|1199289165|gb|OUS44300.1| (hypothetical protein BE221DRAFT_78412 [Ostreococcus tauri]) HSP 1 Score: 128.642 bits (322), Expect = 4.003e-33 Identity = 62/123 (50.41%), Postives = 83/123 (67.48%), Query Frame = 0
Query: 115 EYKVGVIVVDHGSRRKEANEALESVASEFKALSGYELVEPAHMELCEPSIATAFGRCVERGATFIICHPFFLSRGRHVAEDIPNLLEEAASIFPGVEWALSQPLGLQADIPRLMQQAVEECIA 237
E +GV++VDHGSRRKE+N LE ++ ++G ++VE AHMEL PSIA AFGRCVERGA I+ PFFLS GRH EDIP L++EAA+ GV +S P+GL + ++ + C+A
Sbjct: 58 EDVLGVVIVDHGSRRKESNAQLEVFVEQYARVTGRDIVEAAHMELASPSIADAFGRCVERGANVIVVAPFFLSPGRHWQEDIPQLVKEAAAAHSGVRHVVSAPIGLHPLMVEVIDSRMRHCLA 180
BLAST of EWM29197.1 vs. NCBI_GenBank
Match: gi|728834240|gb|KHG13683.1| (Sirohydrochlorin ferrochelatase [Gossypium arboreum]) HSP 1 Score: 129.028 bits (323), Expect = 5.111e-33 Identity = 62/121 (51.24%), Postives = 80/121 (66.12%), Query Frame = 0
Query: 117 KVGVIVVDHGSRRKEANEALESVASEFKALSGYELVEPAHMELCEPSIATAFGRCVERGATFIICHPFFLSRGRHVAEDIPNLLEEAASIFPGVEWALSQPLGLQADIPRLMQQAVEECIA 237
K GVI+VDHGSRRKE+N L + F+ SGY +VEPAHMEL EPSI AFG CV+RGA +I PFFL GRH +DIP L +AA PGV + ++ PLGL + +M ++ C++
Sbjct: 70 KDGVIIVDHGSRRKESNLMLNEFVAMFREKSGYPIVEPAHMELAEPSIKDAFGLCVQRGANRVIVSPFFLFPGRHWYQDIPLLTADAAKDHPGVSYIITAPLGLHELLVDVMNDRIKHCLS 190
BLAST of EWM29197.1 vs. NCBI_GenBank
Match: gi|1012343632|gb|KYP54824.1| (Sirohydrochlorin ferrochelatase [Cajanus cajan]) HSP 1 Score: 129.028 bits (323), Expect = 5.255e-33 Identity = 77/204 (37.75%), Postives = 105/204 (51.47%), Query Frame = 0
Query: 41 ATSGGTGNRIIAFKMQSPSRSMN--------SWVPKDRRNMLETLSTATQHLEDLGIEEDAHGFQEQQEQQRRWRRQQQKPKEYKVGVIVVDHGSRRKEANEALESVASEFKALSGYELVEPAHMELCEPSIATAFGRCVERGATFIICHPFFLSRGRHVAEDIPNLLEEAASIFPGVEWALSQPLGLQADIPRLMQQAVEECI 236
AT+ G + AF ++SP S + W P N L S + + GF+E + R VI+VDHGSRRKE+N L FK +GYE+VEPAHMEL EPSI+ AF CV++GA +I PFFLS GRH +DIP+L EAA PGV + ++ PLGL + ++ ++ C+
Sbjct: 15 ATNEGLRHTPTAFHLRSPQSSFSVSEIGTNPRWAPFKSSNFLCCSSKPQSLSRFVCLSSQNGGFRENSGEVGRGD-----------AVIIVDHGSRRKESNLLLNDFVEMFKHKTGYEIVEPAHMELAEPSISDAFQSCVKQGANRVIISPFFLSPGRHWNQDIPSLSAEAAKEHPGVSYIVTAPLGLHELLVNVVNDRIKHCL 207
BLAST of EWM29197.1 vs. NCBI_GenBank
Match: gi|1050559401|ref|XP_017639930.1| (PREDICTED: sirohydrochlorin ferrochelatase, chloroplastic [Gossypium arboreum]) HSP 1 Score: 128.642 bits (322), Expect = 5.937e-33 Identity = 62/121 (51.24%), Postives = 80/121 (66.12%), Query Frame = 0
Query: 117 KVGVIVVDHGSRRKEANEALESVASEFKALSGYELVEPAHMELCEPSIATAFGRCVERGATFIICHPFFLSRGRHVAEDIPNLLEEAASIFPGVEWALSQPLGLQADIPRLMQQAVEECIA 237
K GVI+VDHGSRRKE+N L + F+ SGY +VEPAHMEL EPSI AFG CV+RGA +I PFFL GRH +DIP L +AA PGV + ++ PLGL + +M ++ C++
Sbjct: 70 KDGVIIVDHGSRRKESNLMLNEFVAMFREKSGYPIVEPAHMELAEPSIKDAFGLCVQRGANRVIVSPFFLFPGRHWYQDIPLLTADAAKDHPGVSYIITAPLGLHELLVDVMNDRIKHCLS 190 The following BLAST results are available for this feature:
BLAST of EWM29197.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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